2024-12-04 16:34:46,164 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 16:34:47,905 Running on GPU
2024-12-04 16:34:52,482 Found 6 citations for tools or databases
2024-12-04 16:34:52,482 Query 1/1: AIRE_SDR9C7 (length 858)
2024-12-04 16:34:52,847 Sleeping for 6s. Reason: PENDING
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2024-12-04 16:35:50,169 Sleeping for 7s. Reason: PENDING
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2024-12-04 16:36:07,713 Sleeping for 7s. Reason: PENDING
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2024-12-04 16:36:52,372 Sleeping for 6s. Reason: PENDING
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2024-12-04 16:38:00,694 Sleeping for 9s. Reason: PENDING
2024-12-04 16:38:09,953 Sleeping for 8s. Reason: PENDING
2024-12-04 16:38:18,210 Sleeping for 8s. Reason: PENDING
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2024-12-04 16:38:35,735 Sleeping for 10s. Reason: PENDING
2024-12-04 16:38:45,992 Sleeping for 9s. Reason: PENDING
2024-12-04 16:38:55,250 Sleeping for 7s. Reason: PENDING
2024-12-04 16:39:02,510 Sleeping for 10s. Reason: PENDING
2024-12-04 16:39:12,767 Sleeping for 6s. Reason: PENDING
2024-12-04 16:39:19,031 Sleeping for 7s. Reason: PENDING
2024-12-04 16:39:26,286 Sleeping for 5s. Reason: PENDING
2024-12-04 16:39:31,540 Sleeping for 9s. Reason: PENDING
2024-12-04 16:39:40,797 Sleeping for 8s. Reason: PENDING
2024-12-04 16:39:49,060 Sleeping for 5s. Reason: PENDING
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2024-12-04 16:40:03,574 Sleeping for 6s. Reason: PENDING
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2024-12-04 16:40:19,088 Sleeping for 6s. Reason: PENDING
2024-12-04 16:40:25,345 Sleeping for 7s. Reason: PENDING
2024-12-04 16:40:32,603 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:40:38,879 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:40:44,133 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:40:50,389 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:41:00,646 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:41:06,903 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:41:15,157 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:41:23,414 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:41:31,673 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:41:40,928 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:41:46,192 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:41:53,447 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:41:58,704 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:42:08,970 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:42:16,232 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:42:26,505 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:42:33,763 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:42:40,014 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:42:46,285 Sleeping for 8s. Reason: RUNNING
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2024-12-04 16:42:59,799 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:43:08,057 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:43:18,322 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:43:23,580 Sleeping for 6s. Reason: RUNNING
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2024-12-04 16:43:45,352 Sleeping for 7s. Reason: RUNNING
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2024-12-04 16:44:10,118 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:44:16,374 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:44:25,632 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:44:35,888 Sleeping for 9s. Reason: RUNNING
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2024-12-04 16:44:50,403 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:44:59,665 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:45:09,933 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:45:18,124 Sleeping for 6s. Reason: PENDING
2024-12-04 16:45:24,383 Sleeping for 5s. Reason: PENDING
2024-12-04 16:45:29,784 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:45:37,041 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:45:43,296 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:45:48,558 Sleeping for 10s. Reason: RUNNING
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2024-12-04 16:46:12,332 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:46:17,584 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:46:23,845 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:46:30,098 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:46:36,360 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:46:46,618 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:46:52,884 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:47:00,138 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:47:10,401 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:47:15,656 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:47:24,917 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:47:31,168 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:47:37,430 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:47:46,689 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:47:56,948 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:48:03,207 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:48:12,466 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:48:18,727 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:48:27,988 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:48:33,246 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:48:38,507 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:48:44,118 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:48:49,378 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:48:56,643 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:49:09,299 Setting max_seq=508, max_extra_seq=2048
2024-12-04 16:51:47,952 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=55.3 pTM=0.433 ipTM=0.196
2024-12-04 16:52:03,230 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=55.8 pTM=0.432 ipTM=0.179 tol=8.12
2024-12-04 16:52:18,580 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=56 pTM=0.429 ipTM=0.171 tol=4.05
2024-12-04 16:52:33,965 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=55.9 pTM=0.435 ipTM=0.192 tol=3.39
2024-12-04 16:52:49,385 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=56 pTM=0.436 ipTM=0.204 tol=2.32
2024-12-04 16:53:04,818 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=55.8 pTM=0.438 ipTM=0.194 tol=2.44
2024-12-04 16:53:20,269 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=55.8 pTM=0.437 ipTM=0.181 tol=2.08
2024-12-04 16:53:35,731 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=55.5 pTM=0.437 ipTM=0.182 tol=5.13
2024-12-04 16:53:51,204 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=55.8 pTM=0.438 ipTM=0.185 tol=5.41
2024-12-04 16:54:06,681 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=55.8 pTM=0.437 ipTM=0.182 tol=1.79
2024-12-04 16:54:22,175 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=55.9 pTM=0.437 ipTM=0.178 tol=4.43
2024-12-04 16:54:37,676 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=56 pTM=0.434 ipTM=0.176 tol=2.61
2024-12-04 16:54:53,188 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=55.9 pTM=0.433 ipTM=0.186 tol=2.54
2024-12-04 16:55:08,712 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=55.8 pTM=0.432 ipTM=0.178 tol=3.71
2024-12-04 16:55:24,231 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=56 pTM=0.431 ipTM=0.184 tol=3.59
2024-12-04 16:55:39,743 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=55.7 pTM=0.433 ipTM=0.191 tol=3.56
2024-12-04 16:55:55,263 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=55.8 pTM=0.433 ipTM=0.191 tol=3.13
2024-12-04 16:56:10,782 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=55.6 pTM=0.431 ipTM=0.19 tol=2.88
2024-12-04 16:56:26,303 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=55.7 pTM=0.434 ipTM=0.203 tol=2.45
2024-12-04 16:56:41,816 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=55.5 pTM=0.432 ipTM=0.213 tol=2.18
2024-12-04 16:56:57,323 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=55.6 pTM=0.433 ipTM=0.216 tol=3.12
2024-12-04 16:57:12,831 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=55.7 pTM=0.432 ipTM=0.214 tol=3.18
2024-12-04 16:57:28,349 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=55.8 pTM=0.433 ipTM=0.212 tol=2.01
2024-12-04 16:57:43,874 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=55.7 pTM=0.434 ipTM=0.21 tol=2.38
2024-12-04 16:57:59,398 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=55.6 pTM=0.434 ipTM=0.212 tol=2.43
2024-12-04 16:58:14,914 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=55.7 pTM=0.433 ipTM=0.216 tol=2.75
2024-12-04 16:58:30,427 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=55.8 pTM=0.434 ipTM=0.218 tol=3.21
2024-12-04 16:58:45,951 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=55.9 pTM=0.434 ipTM=0.214 tol=1.61
2024-12-04 16:59:01,471 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=56 pTM=0.433 ipTM=0.222 tol=1.82
2024-12-04 16:59:16,995 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=56.1 pTM=0.433 ipTM=0.22 tol=2.45
2024-12-04 16:59:32,523 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=56.2 pTM=0.431 ipTM=0.219 tol=2.71
2024-12-04 16:59:32,524 alphafold2_multimer_v3_model_1_seed_000 took 619.6s (30 recycles)
2024-12-04 16:59:48,522 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=56.7 pTM=0.418 ipTM=0.15
2024-12-04 17:00:04,079 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=56 pTM=0.428 ipTM=0.2 tol=19.3
2024-12-04 17:00:19,633 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=55.9 pTM=0.429 ipTM=0.196 tol=8.02
2024-12-04 17:00:35,185 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=56 pTM=0.43 ipTM=0.201 tol=5.13
2024-12-04 17:00:50,732 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=56.3 pTM=0.43 ipTM=0.202 tol=3.36
2024-12-04 17:01:06,271 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=56.3 pTM=0.431 ipTM=0.211 tol=3.37
2024-12-04 17:01:21,808 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=56.2 pTM=0.43 ipTM=0.215 tol=3.17
2024-12-04 17:01:37,346 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=56.5 pTM=0.431 ipTM=0.222 tol=3.9
2024-12-04 17:01:52,893 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=56.6 pTM=0.431 ipTM=0.218 tol=3.2
2024-12-04 17:02:08,434 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=56.6 pTM=0.431 ipTM=0.23 tol=1.41
2024-12-04 17:02:23,982 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=56.7 pTM=0.431 ipTM=0.219 tol=1.76
2024-12-04 17:02:39,523 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=56.7 pTM=0.432 ipTM=0.227 tol=1.73
2024-12-04 17:02:55,065 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=56.6 pTM=0.431 ipTM=0.223 tol=1.49
2024-12-04 17:03:10,611 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=56.6 pTM=0.432 ipTM=0.228 tol=1.72
2024-12-04 17:03:26,153 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=56.6 pTM=0.43 ipTM=0.218 tol=1.25
2024-12-04 17:03:41,686 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=56.5 pTM=0.432 ipTM=0.224 tol=1.48
2024-12-04 17:03:57,224 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=56.6 pTM=0.431 ipTM=0.227 tol=1.77
2024-12-04 17:04:12,757 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=56.6 pTM=0.431 ipTM=0.229 tol=1.32
2024-12-04 17:04:28,286 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=56.6 pTM=0.432 ipTM=0.227 tol=1.49
2024-12-04 17:04:43,816 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=56.6 pTM=0.432 ipTM=0.227 tol=1.67
2024-12-04 17:04:59,343 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=56.6 pTM=0.434 ipTM=0.239 tol=1.52
2024-12-04 17:05:14,873 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=56.6 pTM=0.433 ipTM=0.229 tol=2.8
2024-12-04 17:05:30,404 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=56.7 pTM=0.433 ipTM=0.228 tol=2.02
2024-12-04 17:05:45,929 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=56.6 pTM=0.433 ipTM=0.23 tol=2.23
2024-12-04 17:06:01,459 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=56.7 pTM=0.432 ipTM=0.219 tol=1.56
2024-12-04 17:06:16,984 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=56.5 pTM=0.433 ipTM=0.227 tol=2.18
2024-12-04 17:06:32,508 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=56.6 pTM=0.432 ipTM=0.226 tol=1.96
2024-12-04 17:06:48,033 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=56.6 pTM=0.432 ipTM=0.224 tol=2.43
2024-12-04 17:07:03,551 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=56.6 pTM=0.431 ipTM=0.224 tol=1.73
2024-12-04 17:07:19,070 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=56.6 pTM=0.432 ipTM=0.222 tol=2.36
2024-12-04 17:07:34,585 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=56.5 pTM=0.432 ipTM=0.222 tol=1.85
2024-12-04 17:07:34,585 alphafold2_multimer_v3_model_2_seed_000 took 481.6s (30 recycles)
2024-12-04 17:07:50,579 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=56.8 pTM=0.427 ipTM=0.171
2024-12-04 17:08:06,182 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=56.4 pTM=0.422 ipTM=0.236 tol=18.2
2024-12-04 17:08:21,785 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=56.5 pTM=0.422 ipTM=0.226 tol=12.4
2024-12-04 17:08:37,392 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=56.2 pTM=0.419 ipTM=0.211 tol=8.99
2024-12-04 17:08:52,985 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=56.3 pTM=0.424 ipTM=0.224 tol=8.23
2024-12-04 17:09:08,564 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=56.3 pTM=0.424 ipTM=0.22 tol=10.8
2024-12-04 17:09:24,130 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=56.2 pTM=0.426 ipTM=0.227 tol=6.53
2024-12-04 17:09:39,693 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.9 pTM=0.423 ipTM=0.215 tol=5
2024-12-04 17:09:55,254 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=56 pTM=0.428 ipTM=0.228 tol=8.59
2024-12-04 17:10:10,820 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=56.1 pTM=0.426 ipTM=0.219 tol=7.18
2024-12-04 17:10:26,401 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=56 pTM=0.428 ipTM=0.22 tol=5.15
2024-12-04 17:10:41,979 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=56.2 pTM=0.428 ipTM=0.222 tol=4.14
2024-12-04 17:10:57,553 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=55.8 pTM=0.428 ipTM=0.223 tol=3.18
2024-12-04 17:11:13,119 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.8 pTM=0.428 ipTM=0.221 tol=2.71
2024-12-04 17:11:28,688 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.8 pTM=0.431 ipTM=0.229 tol=3.75
2024-12-04 17:11:44,250 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55.7 pTM=0.433 ipTM=0.222 tol=2.96
2024-12-04 17:11:59,817 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.5 pTM=0.431 ipTM=0.217 tol=2.49
2024-12-04 17:12:15,373 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.6 pTM=0.433 ipTM=0.217 tol=2.08
2024-12-04 17:12:30,927 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=55.6 pTM=0.432 ipTM=0.23 tol=2.8
2024-12-04 17:12:46,478 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.6 pTM=0.435 ipTM=0.221 tol=1.99
2024-12-04 17:13:02,038 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=55.5 pTM=0.434 ipTM=0.228 tol=1.94
2024-12-04 17:13:17,588 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=55.7 pTM=0.436 ipTM=0.217 tol=2.8
2024-12-04 17:13:33,143 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=55.7 pTM=0.435 ipTM=0.227 tol=2.21
2024-12-04 17:13:48,690 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55.8 pTM=0.439 ipTM=0.219 tol=1.88
2024-12-04 17:14:04,238 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.8 pTM=0.436 ipTM=0.226 tol=2.15
2024-12-04 17:14:19,788 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.9 pTM=0.435 ipTM=0.219 tol=2.46
2024-12-04 17:14:35,348 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.8 pTM=0.434 ipTM=0.227 tol=2.16
2024-12-04 17:14:50,905 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55.6 pTM=0.438 ipTM=0.222 tol=2.17
2024-12-04 17:15:06,454 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55.8 pTM=0.435 ipTM=0.222 tol=2.03
2024-12-04 17:15:22,012 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.8 pTM=0.438 ipTM=0.219 tol=1.92
2024-12-04 17:15:37,569 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.8 pTM=0.436 ipTM=0.228 tol=2.44
2024-12-04 17:15:37,569 alphafold2_multimer_v3_model_3_seed_000 took 482.5s (30 recycles)
2024-12-04 17:15:53,544 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=53.5 pTM=0.431 ipTM=0.215
2024-12-04 17:16:09,093 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=55.4 pTM=0.426 ipTM=0.219 tol=15.4
2024-12-04 17:16:24,651 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=55.1 pTM=0.436 ipTM=0.233 tol=10.1
2024-12-04 17:16:40,198 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=55.1 pTM=0.434 ipTM=0.214 tol=7.96
2024-12-04 17:16:55,747 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55 pTM=0.439 ipTM=0.225 tol=5.49
2024-12-04 17:17:11,284 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55.2 pTM=0.439 ipTM=0.219 tol=2.9
2024-12-04 17:17:26,814 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=54.7 pTM=0.442 ipTM=0.22 tol=2.96
2024-12-04 17:17:42,346 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=54.9 pTM=0.439 ipTM=0.211 tol=2.26
2024-12-04 17:17:57,872 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=54.9 pTM=0.44 ipTM=0.221 tol=2.02
2024-12-04 17:18:13,405 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=55 pTM=0.439 ipTM=0.21 tol=2.32
2024-12-04 17:18:28,926 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=54.8 pTM=0.442 ipTM=0.212 tol=2.65
2024-12-04 17:18:44,466 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=55.1 pTM=0.442 ipTM=0.209 tol=3.53
2024-12-04 17:18:59,989 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=54.8 pTM=0.441 ipTM=0.215 tol=2.7
2024-12-04 17:19:15,519 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=55.2 pTM=0.445 ipTM=0.214 tol=5.48
2024-12-04 17:19:31,049 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=54.9 pTM=0.445 ipTM=0.255 tol=4.31
2024-12-04 17:19:46,581 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55.5 pTM=0.457 ipTM=0.332 tol=3.95
2024-12-04 17:20:02,114 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=55.2 pTM=0.448 ipTM=0.261 tol=3.44
2024-12-04 17:20:17,628 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=55.2 pTM=0.454 ipTM=0.272 tol=2.88
2024-12-04 17:20:33,145 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=55.1 pTM=0.449 ipTM=0.291 tol=2.45
2024-12-04 17:20:48,668 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.2 pTM=0.454 ipTM=0.305 tol=2.34
2024-12-04 17:21:04,188 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55.1 pTM=0.449 ipTM=0.315 tol=2.51
2024-12-04 17:21:19,697 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=55.2 pTM=0.455 ipTM=0.36 tol=4.55
2024-12-04 17:21:35,214 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=55.2 pTM=0.448 ipTM=0.278 tol=3.82
2024-12-04 17:21:50,742 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55.1 pTM=0.454 ipTM=0.278 tol=3.12
2024-12-04 17:22:06,268 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=54.8 pTM=0.448 ipTM=0.256 tol=1.98
2024-12-04 17:22:21,819 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55.3 pTM=0.457 ipTM=0.39 tol=1.81
2024-12-04 17:22:37,378 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=55.1 pTM=0.447 ipTM=0.26 tol=2.66
2024-12-04 17:22:52,959 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.1 pTM=0.454 ipTM=0.256 tol=3.29
2024-12-04 17:23:08,531 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=55.2 pTM=0.451 ipTM=0.313 tol=2.68
2024-12-04 17:23:24,107 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55 pTM=0.454 ipTM=0.312 tol=2.74
2024-12-04 17:23:39,677 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55 pTM=0.447 ipTM=0.273 tol=2.04
2024-12-04 17:23:39,678 alphafold2_multimer_v3_model_4_seed_000 took 481.6s (30 recycles)
2024-12-04 17:23:55,756 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=56.1 pTM=0.416 ipTM=0.224
2024-12-04 17:24:11,371 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=56.2 pTM=0.421 ipTM=0.213 tol=17.2
2024-12-04 17:24:27,017 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=56.3 pTM=0.424 ipTM=0.214 tol=12.1
2024-12-04 17:24:42,641 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=56.3 pTM=0.424 ipTM=0.21 tol=6.62
2024-12-04 17:24:58,278 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=56.3 pTM=0.426 ipTM=0.208 tol=6.01
2024-12-04 17:25:13,907 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=56.3 pTM=0.425 ipTM=0.217 tol=5.55
2024-12-04 17:25:29,545 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=56.2 pTM=0.426 ipTM=0.209 tol=5.06
2024-12-04 17:25:45,186 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=56.5 pTM=0.426 ipTM=0.21 tol=3.01
2024-12-04 17:26:00,806 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=56.3 pTM=0.427 ipTM=0.204 tol=1.96
2024-12-04 17:26:16,433 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=56.5 pTM=0.426 ipTM=0.211 tol=1.69
2024-12-04 17:26:32,051 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=56.2 pTM=0.426 ipTM=0.201 tol=7.64
2024-12-04 17:26:47,668 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=56.4 pTM=0.425 ipTM=0.21 tol=7.75
2024-12-04 17:27:03,274 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=56.2 pTM=0.426 ipTM=0.208 tol=3.04
2024-12-04 17:27:18,889 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=56.4 pTM=0.425 ipTM=0.212 tol=2.12
2024-12-04 17:27:34,491 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=56.2 pTM=0.426 ipTM=0.2 tol=5.8
2024-12-04 17:27:50,096 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=56.3 pTM=0.427 ipTM=0.214 tol=5.29
2024-12-04 17:28:05,698 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=56.2 pTM=0.424 ipTM=0.203 tol=2.35
2024-12-04 17:28:21,287 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=56.2 pTM=0.425 ipTM=0.215 tol=5.63
2024-12-04 17:28:36,875 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=56.1 pTM=0.428 ipTM=0.208 tol=5.16
2024-12-04 17:28:52,464 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=56.2 pTM=0.426 ipTM=0.215 tol=2.78
2024-12-04 17:29:08,052 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=56.1 pTM=0.427 ipTM=0.209 tol=2.17
2024-12-04 17:29:23,645 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=56.2 pTM=0.426 ipTM=0.214 tol=4.46
2024-12-04 17:29:39,230 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=56.1 pTM=0.428 ipTM=0.206 tol=3.47
2024-12-04 17:29:54,810 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=56.3 pTM=0.427 ipTM=0.224 tol=4
2024-12-04 17:30:10,381 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=56.1 pTM=0.426 ipTM=0.204 tol=5.15
2024-12-04 17:30:25,965 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=56.2 pTM=0.427 ipTM=0.218 tol=4.15
2024-12-04 17:30:41,548 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=56 pTM=0.426 ipTM=0.21 tol=2.41
2024-12-04 17:30:57,137 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=56.2 pTM=0.427 ipTM=0.218 tol=1.16
2024-12-04 17:31:12,725 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=56.1 pTM=0.426 ipTM=0.204 tol=2.22
2024-12-04 17:31:28,308 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=56.1 pTM=0.427 ipTM=0.214 tol=1.58
2024-12-04 17:31:43,884 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=56 pTM=0.425 ipTM=0.205 tol=1.9
2024-12-04 17:31:43,885 alphafold2_multimer_v3_model_5_seed_000 took 483.7s (30 recycles)
2024-12-04 17:31:44,350 reranking models by 'multimer' metric
2024-12-04 17:31:47,970 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-04 17:32:52,493 Relaxation took 68.1s
2024-12-04 17:32:52,493 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55 pTM=0.447 ipTM=0.273
2024-12-04 17:34:00,095 Relaxation took 67.6s
2024-12-04 17:34:00,095 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.8 pTM=0.436 ipTM=0.228
2024-12-04 17:35:03,940 Relaxation took 63.8s
2024-12-04 17:35:03,940 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=56.5 pTM=0.432 ipTM=0.222
2024-12-04 17:36:11,469 Relaxation took 67.5s
2024-12-04 17:36:11,469 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=56.2 pTM=0.431 ipTM=0.219
2024-12-04 17:37:08,357 Relaxation took 56.9s
2024-12-04 17:37:08,357 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=56 pTM=0.425 ipTM=0.205
2024-12-04 17:37:10,017 Done