2024-12-04 16:34:46,164 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 16:34:47,905 Running on GPU
2024-12-04 16:34:52,482 Found 6 citations for tools or databases
2024-12-04 16:34:52,482 Query 1/1: AMBRA1_DQX1 (length 2015)
2024-12-04 16:34:52,850 Sleeping for 6s. Reason: PENDING
2024-12-04 16:34:59,107 Sleeping for 8s. Reason: PENDING
2024-12-04 16:35:07,364 Sleeping for 9s. Reason: PENDING
2024-12-04 16:35:16,623 Sleeping for 7s. Reason: PENDING
2024-12-04 16:35:23,878 Sleeping for 7s. Reason: PENDING
2024-12-04 16:35:31,134 Sleeping for 8s. Reason: PENDING
2024-12-04 16:35:39,391 Sleeping for 6s. Reason: PENDING
2024-12-04 16:35:45,654 Sleeping for 9s. Reason: PENDING
2024-12-04 16:35:54,912 Sleeping for 7s. Reason: PENDING
2024-12-04 16:36:02,178 Sleeping for 9s. Reason: PENDING
2024-12-04 16:36:11,435 Sleeping for 5s. Reason: PENDING
2024-12-04 16:36:16,699 Sleeping for 10s. Reason: PENDING
2024-12-04 16:36:26,956 Sleeping for 7s. Reason: PENDING
2024-12-04 16:36:34,212 Sleeping for 10s. Reason: PENDING
2024-12-04 16:36:44,472 Sleeping for 10s. Reason: PENDING
2024-12-04 16:36:54,738 Sleeping for 7s. Reason: PENDING
2024-12-04 16:37:01,992 Sleeping for 7s. Reason: PENDING
2024-12-04 16:37:09,247 Sleeping for 9s. Reason: PENDING
2024-12-04 16:37:18,501 Sleeping for 6s. Reason: PENDING
2024-12-04 16:37:24,756 Sleeping for 6s. Reason: PENDING
2024-12-04 16:37:31,007 Sleeping for 6s. Reason: PENDING
2024-12-04 16:37:37,259 Sleeping for 9s. Reason: PENDING
2024-12-04 16:37:46,525 Sleeping for 5s. Reason: PENDING
2024-12-04 16:37:51,781 Sleeping for 5s. Reason: PENDING
2024-12-04 16:37:57,035 Sleeping for 8s. Reason: PENDING
2024-12-04 16:38:05,295 Sleeping for 8s. Reason: PENDING
2024-12-04 16:38:13,547 Sleeping for 6s. Reason: PENDING
2024-12-04 16:38:19,809 Sleeping for 10s. Reason: PENDING
2024-12-04 16:38:30,067 Sleeping for 5s. Reason: PENDING
2024-12-04 16:38:35,321 Sleeping for 5s. Reason: PENDING
2024-12-04 16:38:40,575 Sleeping for 9s. Reason: PENDING
2024-12-04 16:38:49,832 Sleeping for 5s. Reason: PENDING
2024-12-04 16:38:55,090 Sleeping for 8s. Reason: PENDING
2024-12-04 16:39:03,347 Sleeping for 6s. Reason: PENDING
2024-12-04 16:39:09,604 Sleeping for 10s. Reason: PENDING
2024-12-04 16:39:19,872 Sleeping for 6s. Reason: PENDING
2024-12-04 16:39:26,132 Sleeping for 10s. Reason: PENDING
2024-12-04 16:39:36,399 Sleeping for 10s. Reason: PENDING
2024-12-04 16:39:46,666 Sleeping for 9s. Reason: PENDING
2024-12-04 16:39:55,930 Sleeping for 8s. Reason: PENDING
2024-12-04 16:40:04,186 Sleeping for 7s. Reason: PENDING
2024-12-04 16:40:11,445 Sleeping for 10s. Reason: PENDING
2024-12-04 16:40:21,704 Sleeping for 7s. Reason: PENDING
2024-12-04 16:40:28,961 Sleeping for 6s. Reason: PENDING
2024-12-04 16:40:35,218 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:40:41,470 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:40:47,732 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:40:53,990 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:41:02,244 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:41:11,509 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:41:20,766 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:41:29,040 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:41:38,296 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:41:45,555 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:41:51,820 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:42:00,078 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:42:09,351 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:42:14,610 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:42:22,867 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:42:31,123 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:42:37,382 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:42:44,639 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:42:49,888 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:42:55,149 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:43:04,406 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:43:14,665 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:43:21,918 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:43:32,172 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:43:41,430 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:43:46,689 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:43:53,951 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:44:01,205 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:44:09,616 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:44:16,875 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:44:26,137 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:44:35,397 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:44:43,654 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:44:51,915 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:45:02,172 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:45:10,455 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:45:15,718 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:45:22,982 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:45:30,239 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:45:39,488 Sleeping for 9s. Reason: PENDING
2024-12-04 16:45:48,744 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:45:55,000 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:46:04,266 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:46:10,527 Sleeping for 9s. Reason: RUNNING
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2024-12-04 16:46:27,048 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:46:35,303 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:46:43,560 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:46:50,817 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:46:58,079 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:47:08,342 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:47:15,602 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:47:21,856 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:47:32,114 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:47:39,367 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:47:46,619 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:47:51,872 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:48:02,141 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:48:07,401 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:48:17,666 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:48:26,937 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:48:32,199 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:48:37,458 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:48:44,714 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:48:52,973 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:49:01,232 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:49:16,395 Setting max_seq=508, max_extra_seq=2048
2024-12-04 16:54:46,912 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=51 pTM=0.425 ipTM=0.279
2024-12-04 16:57:29,823 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=51.9 pTM=0.436 ipTM=0.263 tol=23.2
2024-12-04 17:00:12,654 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=51.6 pTM=0.441 ipTM=0.4 tol=13.1
2024-12-04 17:02:55,442 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=51.8 pTM=0.439 ipTM=0.307 tol=10.1
2024-12-04 17:05:38,228 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=52.2 pTM=0.443 ipTM=0.302 tol=6.19
2024-12-04 17:08:21,055 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=52.3 pTM=0.437 ipTM=0.395 tol=5.46
2024-12-04 17:11:03,858 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=52.4 pTM=0.443 ipTM=0.301 tol=5.97
2024-12-04 17:13:46,698 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=52.6 pTM=0.441 ipTM=0.288 tol=8.58
2024-12-04 17:16:29,485 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=52.2 pTM=0.43 ipTM=0.346 tol=5.84
2024-12-04 17:19:12,335 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=52 pTM=0.428 ipTM=0.283 tol=3.79
2024-12-04 17:21:55,146 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=52.3 pTM=0.435 ipTM=0.289 tol=4.9
2024-12-04 17:24:38,035 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=52.1 pTM=0.43 ipTM=0.387 tol=4.73
2024-12-04 17:27:21,024 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=52 pTM=0.427 ipTM=0.277 tol=2.72
2024-12-04 17:30:03,887 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=52.3 pTM=0.436 ipTM=0.279 tol=3.38
2024-12-04 17:32:46,751 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=52.1 pTM=0.429 ipTM=0.371 tol=3.83
2024-12-04 17:35:29,655 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=52.2 pTM=0.43 ipTM=0.282 tol=3.68
2024-12-04 17:38:12,433 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=52.4 pTM=0.439 ipTM=0.284 tol=4.36
2024-12-04 17:40:55,234 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=52.3 pTM=0.432 ipTM=0.358 tol=4.04
2024-12-04 17:43:38,053 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=52.4 pTM=0.435 ipTM=0.277 tol=10.4
2024-12-04 17:46:20,880 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=52.7 pTM=0.437 ipTM=0.281 tol=5.66
2024-12-04 17:49:03,738 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=52.3 pTM=0.43 ipTM=0.475 tol=4.71
2024-12-04 17:51:46,590 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=52.2 pTM=0.429 ipTM=0.276 tol=3.39
2024-12-04 17:54:29,451 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=52.4 pTM=0.429 ipTM=0.271 tol=2.78
2024-12-04 17:57:12,231 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=52.5 pTM=0.437 ipTM=0.308 tol=6.15
2024-12-04 17:59:54,905 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=52.6 pTM=0.444 ipTM=0.328 tol=4.59
2024-12-04 18:02:37,706 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=52.6 pTM=0.437 ipTM=0.275 tol=5.6
2024-12-04 18:05:20,667 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=52.4 pTM=0.431 ipTM=0.452 tol=4.96
2024-12-04 18:08:03,550 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=52.2 pTM=0.428 ipTM=0.269 tol=3.7
2024-12-04 18:10:46,424 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=52.2 pTM=0.429 ipTM=0.258 tol=3.49
2024-12-04 18:13:29,242 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=52.4 pTM=0.434 ipTM=0.293 tol=6.25
2024-12-04 18:16:12,082 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=52.4 pTM=0.434 ipTM=0.35 tol=4.8
2024-12-04 18:16:12,085 alphafold2_multimer_v3_model_1_seed_000 took 5212.0s (30 recycles)
2024-12-04 18:18:57,142 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=51.2 pTM=0.441 ipTM=0.28
2024-12-04 18:21:40,127 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=52 pTM=0.438 ipTM=0.289 tol=16.3
2024-12-04 18:24:23,019 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=52.9 pTM=0.473 ipTM=0.45 tol=14.1
2024-12-04 18:27:05,875 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=53.1 pTM=0.467 ipTM=0.404 tol=10.6
2024-12-04 18:29:48,691 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=53 pTM=0.471 ipTM=0.433 tol=7.54
2024-12-04 18:32:31,646 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=52.6 pTM=0.455 ipTM=0.352 tol=6.29
2024-12-04 18:35:14,546 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=52.8 pTM=0.454 ipTM=0.372 tol=5.04
2024-12-04 18:37:57,433 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=52.8 pTM=0.448 ipTM=0.309 tol=6.06
2024-12-04 18:40:40,271 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=53 pTM=0.449 ipTM=0.333 tol=5.51
2024-12-04 18:43:23,128 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=53 pTM=0.45 ipTM=0.321 tol=5.12
2024-12-04 18:46:06,092 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=53 pTM=0.445 ipTM=0.314 tol=4.82
2024-12-04 18:48:49,012 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=53.2 pTM=0.459 ipTM=0.353 tol=5.56
2024-12-04 18:51:32,007 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=53 pTM=0.448 ipTM=0.332 tol=4.19
2024-12-04 18:54:15,023 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=53 pTM=0.448 ipTM=0.331 tol=5.55
2024-12-04 18:56:58,057 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=52.8 pTM=0.439 ipTM=0.293 tol=6.25
2024-12-04 18:59:41,163 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=53.2 pTM=0.451 ipTM=0.353 tol=5.66
2024-12-04 19:02:24,197 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=53 pTM=0.444 ipTM=0.303 tol=7.5
2024-12-04 19:05:07,178 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=52.9 pTM=0.437 ipTM=0.319 tol=11.4
2024-12-04 19:07:50,078 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=53.2 pTM=0.454 ipTM=0.348 tol=7.4
2024-12-04 19:10:33,102 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=52.9 pTM=0.44 ipTM=0.278 tol=6.05
2024-12-04 19:13:16,206 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=52.7 pTM=0.433 ipTM=0.459 tol=8.26
2024-12-04 19:15:59,250 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=52.4 pTM=0.43 ipTM=0.269 tol=7.15
2024-12-04 19:18:42,198 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=53.1 pTM=0.446 ipTM=0.295 tol=8.97
2024-12-04 19:21:25,152 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=53.1 pTM=0.45 ipTM=0.315 tol=4.22
2024-12-04 19:24:08,143 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=52.9 pTM=0.445 ipTM=0.296 tol=3.3
2024-12-04 19:26:51,123 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=53 pTM=0.443 ipTM=0.288 tol=3
2024-12-04 19:29:34,146 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=52.8 pTM=0.441 ipTM=0.285 tol=3.36
2024-12-04 19:32:17,163 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=52.8 pTM=0.44 ipTM=0.284 tol=4.63
2024-12-04 19:35:00,141 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=52.8 pTM=0.443 ipTM=0.292 tol=4.42
2024-12-04 19:37:43,200 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=52.6 pTM=0.436 ipTM=0.268 tol=6.65
2024-12-04 19:40:26,067 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=53.3 pTM=0.471 ipTM=0.45 tol=7.82
2024-12-04 19:40:26,069 alphafold2_multimer_v3_model_2_seed_000 took 5051.6s (30 recycles)
2024-12-04 19:43:11,720 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=52.1 pTM=0.442 ipTM=0.299
2024-12-04 19:45:55,027 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=52.8 pTM=0.442 ipTM=0.262 tol=14.4
2024-12-04 19:48:38,031 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=53.2 pTM=0.462 ipTM=0.365 tol=11.5
2024-12-04 19:51:21,302 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=53.1 pTM=0.436 ipTM=0.219 tol=11.5
2024-12-04 19:54:04,611 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=53.2 pTM=0.443 ipTM=0.507 tol=9.2
2024-12-04 19:56:47,830 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=53.4 pTM=0.452 ipTM=0.285 tol=6.66
2024-12-04 19:59:31,223 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=53 pTM=0.438 ipTM=0.261 tol=11.8
2024-12-04 20:02:14,394 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=54 pTM=0.457 ipTM=0.601 tol=8.03
2024-12-04 20:04:57,416 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=54.2 pTM=0.495 ipTM=0.607 tol=7.55
2024-12-04 20:07:40,300 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=54.5 pTM=0.508 ipTM=0.635 tol=6.66
2024-12-04 20:10:23,140 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=54.8 pTM=0.518 ipTM=0.654 tol=9.67
2024-12-04 20:13:05,914 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=54.8 pTM=0.521 ipTM=0.644 tol=6.84
2024-12-04 20:15:48,720 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=54.9 pTM=0.509 ipTM=0.633 tol=9.37
2024-12-04 20:18:31,564 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55 pTM=0.504 ipTM=0.65 tol=5.34
2024-12-04 20:21:14,422 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=54.7 pTM=0.5 ipTM=0.638 tol=4.68
2024-12-04 20:23:57,294 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=54.9 pTM=0.501 ipTM=0.646 tol=4.32
2024-12-04 20:26:40,243 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=54.7 pTM=0.495 ipTM=0.619 tol=3.99
2024-12-04 20:29:23,277 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=54.6 pTM=0.494 ipTM=0.635 tol=4.78
2024-12-04 20:32:06,215 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=54.6 pTM=0.493 ipTM=0.617 tol=5.41
2024-12-04 20:34:49,180 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.1 pTM=0.502 ipTM=0.651 tol=8.16
2024-12-04 20:37:32,070 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=53.6 pTM=0.502 ipTM=0.634 tol=24.4
2024-12-04 20:40:14,967 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=54.1 pTM=0.475 ipTM=0.625 tol=20
2024-12-04 20:42:57,825 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=54.7 pTM=0.485 ipTM=0.657 tol=8.7
2024-12-04 20:45:40,723 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=54.5 pTM=0.489 ipTM=0.59 tol=8.79
2024-12-04 20:48:23,669 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=54.4 pTM=0.475 ipTM=0.588 tol=9.04
2024-12-04 20:51:06,587 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=54.5 pTM=0.478 ipTM=0.64 tol=8.89
2024-12-04 20:53:49,521 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=54.7 pTM=0.48 ipTM=0.62 tol=7.98
2024-12-04 20:56:32,429 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=54.6 pTM=0.479 ipTM=0.605 tol=4.95
2024-12-04 20:59:15,336 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=54.7 pTM=0.476 ipTM=0.616 tol=4.38
2024-12-04 21:01:58,149 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55 pTM=0.477 ipTM=0.627 tol=2.8
2024-12-04 21:04:41,000 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.2 pTM=0.485 ipTM=0.637 tol=2.72
2024-12-04 21:04:41,002 alphafold2_multimer_v3_model_3_seed_000 took 5052.6s (30 recycles)
2024-12-04 21:07:26,438 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=50.2 pTM=0.43 ipTM=0.314
2024-12-04 21:10:09,515 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=51.9 pTM=0.455 ipTM=0.361 tol=20.6
2024-12-04 21:12:52,684 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=52.3 pTM=0.446 ipTM=0.312 tol=13.4
2024-12-04 21:15:35,984 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=51.6 pTM=0.436 ipTM=0.29 tol=15.2
2024-12-04 21:18:19,020 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=52.6 pTM=0.456 ipTM=0.399 tol=13.3
2024-12-04 21:21:02,126 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=52.2 pTM=0.446 ipTM=0.289 tol=9.57
2024-12-04 21:23:45,352 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=52 pTM=0.435 ipTM=0.304 tol=8.67
2024-12-04 21:26:28,371 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=53 pTM=0.458 ipTM=0.563 tol=9.77
2024-12-04 21:29:11,357 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=52.3 pTM=0.454 ipTM=0.4 tol=12.2
2024-12-04 21:31:54,463 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=51.8 pTM=0.441 ipTM=0.389 tol=14.6
2024-12-04 21:34:37,701 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=51.4 pTM=0.435 ipTM=0.311 tol=11.2
2024-12-04 21:37:20,830 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=52.5 pTM=0.453 ipTM=0.532 tol=10.5
2024-12-04 21:40:03,926 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=51.8 pTM=0.441 ipTM=0.285 tol=9.29
2024-12-04 21:42:46,976 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=51.8 pTM=0.441 ipTM=0.293 tol=8.39
2024-12-04 21:45:29,981 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=52.2 pTM=0.448 ipTM=0.319 tol=8.07
2024-12-04 21:48:13,058 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=51.9 pTM=0.44 ipTM=0.282 tol=9.61
2024-12-04 21:50:56,187 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=51.7 pTM=0.439 ipTM=0.263 tol=6.17
2024-12-04 21:53:39,280 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=52.2 pTM=0.446 ipTM=0.301 tol=9.57
2024-12-04 21:56:22,503 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=51.8 pTM=0.44 ipTM=0.272 tol=8.76
2024-12-04 21:59:05,665 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=52.1 pTM=0.437 ipTM=0.289 tol=6.35
2024-12-04 22:01:48,800 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=51.8 pTM=0.437 ipTM=0.282 tol=10
2024-12-04 22:04:31,952 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=51.3 pTM=0.434 ipTM=0.296 tol=10.9
2024-12-04 22:07:14,918 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=52.6 pTM=0.453 ipTM=0.448 tol=10.6
2024-12-04 22:09:58,003 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=52.2 pTM=0.45 ipTM=0.297 tol=12.6
2024-12-04 22:12:41,169 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=51.6 pTM=0.437 ipTM=0.315 tol=9.95
2024-12-04 22:15:24,369 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=51.5 pTM=0.437 ipTM=0.322 tol=9.12
2024-12-04 22:18:07,556 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=52.3 pTM=0.445 ipTM=0.27 tol=11.3
2024-12-04 22:20:50,791 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=51.5 pTM=0.435 ipTM=0.28 tol=8.12
2024-12-04 22:23:33,974 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=51.8 pTM=0.44 ipTM=0.316 tol=8.63
2024-12-04 22:26:17,123 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=51.9 pTM=0.441 ipTM=0.259 tol=11
2024-12-04 22:29:00,162 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=52.4 pTM=0.446 ipTM=0.289 tol=8.2
2024-12-04 22:29:00,164 alphafold2_multimer_v3_model_4_seed_000 took 5056.8s (30 recycles)
2024-12-04 22:31:45,520 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=50.8 pTM=0.435 ipTM=0.27
2024-12-04 22:34:28,602 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=51.5 pTM=0.438 ipTM=0.305 tol=14.5
2024-12-04 22:37:11,641 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=52.1 pTM=0.44 ipTM=0.245 tol=15.3
2024-12-04 22:39:54,669 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=52.6 pTM=0.441 ipTM=0.278 tol=13.5
2024-12-04 22:42:37,740 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=52.6 pTM=0.441 ipTM=0.225 tol=8.08
2024-12-04 22:45:20,801 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=52.7 pTM=0.44 ipTM=0.244 tol=11.1
2024-12-04 22:48:03,929 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=52.8 pTM=0.442 ipTM=0.225 tol=9.18
2024-12-04 22:50:47,239 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=52.9 pTM=0.438 ipTM=0.232 tol=6.66
2024-12-04 22:53:30,540 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=52.6 pTM=0.435 ipTM=0.228 tol=7.75
2024-12-04 22:56:13,706 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=52.7 pTM=0.439 ipTM=0.221 tol=6.29
2024-12-04 22:58:56,780 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=52.7 pTM=0.437 ipTM=0.233 tol=9.78
2024-12-04 23:01:39,852 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=52.5 pTM=0.437 ipTM=0.229 tol=4.67
2024-12-04 23:04:22,962 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=52.9 pTM=0.44 ipTM=0.421 tol=8.98
2024-12-04 23:07:05,897 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=53.5 pTM=0.45 ipTM=0.478 tol=10.2
2024-12-04 23:09:48,624 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=53.8 pTM=0.483 ipTM=0.513 tol=9.56
2024-12-04 23:12:31,335 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=54.3 pTM=0.504 ipTM=0.557 tol=8.3
2024-12-04 23:15:14,067 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=54.3 pTM=0.515 ipTM=0.576 tol=7.02
2024-12-04 23:17:56,847 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=54.6 pTM=0.523 ipTM=0.514 tol=6.34
2024-12-04 23:20:39,525 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=54.9 pTM=0.532 ipTM=0.575 tol=5.96
2024-12-04 23:23:22,139 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=55.8 pTM=0.55 ipTM=0.613 tol=6.48
2024-12-04 23:26:04,788 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.2 pTM=0.545 ipTM=0.592 tol=5.84
2024-12-04 23:28:47,477 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55.5 pTM=0.547 ipTM=0.578 tol=4.11
2024-12-04 23:31:30,136 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.9 pTM=0.556 ipTM=0.614 tol=5.29
2024-12-04 23:34:12,807 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.5 pTM=0.553 ipTM=0.595 tol=5.5
2024-12-04 23:36:55,474 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.7 pTM=0.556 ipTM=0.613 tol=7.2
2024-12-04 23:39:38,133 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.6 pTM=0.551 ipTM=0.594 tol=8.67
2024-12-04 23:42:20,795 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=56.1 pTM=0.562 ipTM=0.637 tol=5.12
2024-12-04 23:45:03,503 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=55.8 pTM=0.561 ipTM=0.597 tol=3.56
2024-12-04 23:47:46,043 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=56.2 pTM=0.568 ipTM=0.649 tol=6.96
2024-12-04 23:50:28,581 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.9 pTM=0.562 ipTM=0.605 tol=8.28
2024-12-04 23:53:11,139 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=56.1 pTM=0.567 ipTM=0.647 tol=4
2024-12-04 23:53:11,142 alphafold2_multimer_v3_model_5_seed_000 took 5048.6s (30 recycles)
2024-12-04 23:53:13,471 reranking models by 'multimer' metric
2024-12-04 23:53:18,402 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-04 23:57:44,965 Relaxation took 271.5s
2024-12-04 23:57:44,966 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=56.1 pTM=0.567 ipTM=0.647
2024-12-05 00:02:10,814 Relaxation took 265.8s
2024-12-05 00:02:10,814 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.2 pTM=0.485 ipTM=0.637
2024-12-05 00:08:54,248 Relaxation took 403.4s
2024-12-05 00:08:54,249 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=53.3 pTM=0.471 ipTM=0.45
2024-12-05 00:15:40,239 Relaxation took 406.0s
2024-12-05 00:15:40,239 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=52.4 pTM=0.434 ipTM=0.35
2024-12-05 00:20:56,481 Relaxation took 316.2s
2024-12-05 00:20:56,481 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=52.4 pTM=0.446 ipTM=0.289
2024-12-05 00:21:02,387 Done