2024-12-04 16:34:46,164 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 16:34:47,906 Running on GPU
2024-12-04 16:34:52,482 Found 6 citations for tools or databases
2024-12-04 16:34:52,483 Query 1/1: AMFR_KCNA2 (length 1142)
2024-12-04 16:34:52,863 Sleeping for 9s. Reason: PENDING
2024-12-04 16:35:02,122 Sleeping for 6s. Reason: PENDING
2024-12-04 16:35:08,384 Sleeping for 7s. Reason: PENDING
2024-12-04 16:35:15,637 Sleeping for 8s. Reason: PENDING
2024-12-04 16:35:23,907 Sleeping for 6s. Reason: PENDING
2024-12-04 16:35:30,164 Sleeping for 5s. Reason: PENDING
2024-12-04 16:35:35,418 Sleeping for 6s. Reason: PENDING
2024-12-04 16:35:41,670 Sleeping for 5s. Reason: PENDING
2024-12-04 16:35:46,929 Sleeping for 10s. Reason: PENDING
2024-12-04 16:35:57,189 Sleeping for 10s. Reason: PENDING
2024-12-04 16:36:07,447 Sleeping for 5s. Reason: PENDING
2024-12-04 16:36:12,709 Sleeping for 7s. Reason: PENDING
2024-12-04 16:36:19,963 Sleeping for 8s. Reason: PENDING
2024-12-04 16:36:28,257 Sleeping for 6s. Reason: PENDING
2024-12-04 16:36:34,516 Sleeping for 10s. Reason: PENDING
2024-12-04 16:36:44,778 Sleeping for 5s. Reason: PENDING
2024-12-04 16:36:50,033 Sleeping for 9s. Reason: PENDING
2024-12-04 16:36:59,290 Sleeping for 9s. Reason: PENDING
2024-12-04 16:37:08,559 Sleeping for 5s. Reason: PENDING
2024-12-04 16:37:13,810 Sleeping for 5s. Reason: PENDING
2024-12-04 16:37:19,064 Sleeping for 8s. Reason: PENDING
2024-12-04 16:37:27,320 Sleeping for 9s. Reason: PENDING
2024-12-04 16:37:36,579 Sleeping for 7s. Reason: PENDING
2024-12-04 16:37:43,833 Sleeping for 8s. Reason: PENDING
2024-12-04 16:37:52,087 Sleeping for 7s. Reason: PENDING
2024-12-04 16:37:59,339 Sleeping for 8s. Reason: PENDING
2024-12-04 16:38:07,599 Sleeping for 9s. Reason: PENDING
2024-12-04 16:38:16,859 Sleeping for 9s. Reason: PENDING
2024-12-04 16:38:26,117 Sleeping for 7s. Reason: PENDING
2024-12-04 16:38:33,370 Sleeping for 9s. Reason: PENDING
2024-12-04 16:38:42,630 Sleeping for 10s. Reason: PENDING
2024-12-04 16:38:52,887 Sleeping for 8s. Reason: PENDING
2024-12-04 16:39:01,148 Sleeping for 6s. Reason: PENDING
2024-12-04 16:39:07,401 Sleeping for 8s. Reason: PENDING
2024-12-04 16:39:15,666 Sleeping for 6s. Reason: PENDING
2024-12-04 16:39:21,920 Sleeping for 10s. Reason: PENDING
2024-12-04 16:39:32,177 Sleeping for 8s. Reason: PENDING
2024-12-04 16:39:40,440 Sleeping for 10s. Reason: PENDING
2024-12-04 16:39:50,702 Sleeping for 6s. Reason: PENDING
2024-12-04 16:39:56,960 Sleeping for 8s. Reason: PENDING
2024-12-04 16:40:05,221 Sleeping for 10s. Reason: PENDING
2024-12-04 16:40:15,484 Sleeping for 10s. Reason: PENDING
2024-12-04 16:40:25,753 Sleeping for 5s. Reason: PENDING
2024-12-04 16:40:31,009 Sleeping for 5s. Reason: PENDING
2024-12-04 16:40:36,267 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:40:46,530 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:40:54,786 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:41:03,041 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:41:10,304 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:41:20,567 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:41:30,831 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:41:38,113 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:41:46,369 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:41:53,629 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:41:58,885 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:42:04,143 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:42:11,408 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:42:19,668 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:42:25,920 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:42:35,182 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:42:42,445 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:42:51,712 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:42:57,968 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:43:08,229 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:43:14,485 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:43:19,742 Sleeping for 5s. Reason: RUNNING
2024-12-04 16:43:25,006 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:43:34,260 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:43:41,519 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:43:51,098 Sleeping for 9s. Reason: PENDING
2024-12-04 16:44:00,356 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:44:10,615 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:44:16,870 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:44:24,126 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:44:34,386 Sleeping for 8s. Reason: RUNNING
2024-12-04 16:44:42,647 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:44:48,907 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:44:56,201 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:45:02,459 Sleeping for 9s. Reason: RUNNING
2024-12-04 16:45:11,720 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:45:17,972 Sleeping for 6s. Reason: RUNNING
2024-12-04 16:45:24,228 Sleeping for 7s. Reason: RUNNING
2024-12-04 16:45:31,487 Sleeping for 10s. Reason: RUNNING
2024-12-04 16:45:47,476 Setting max_seq=508, max_extra_seq=2048
2024-12-04 16:48:42,196 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=63.3 pTM=0.385 ipTM=0.165
2024-12-04 16:49:12,055 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=65.1 pTM=0.399 ipTM=0.187 tol=7.35
2024-12-04 16:49:42,065 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=64.9 pTM=0.396 ipTM=0.185 tol=4.65
2024-12-04 16:50:12,250 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=65.2 pTM=0.397 ipTM=0.18 tol=2.74
2024-12-04 16:50:42,493 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=65.1 pTM=0.404 ipTM=0.194 tol=2.83
2024-12-04 16:51:12,744 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=65 pTM=0.406 ipTM=0.197 tol=1.86
2024-12-04 16:51:42,995 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=65.1 pTM=0.403 ipTM=0.194 tol=1.58
2024-12-04 16:52:13,313 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=65.2 pTM=0.403 ipTM=0.193 tol=1.51
2024-12-04 16:52:43,650 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=65.1 pTM=0.402 ipTM=0.192 tol=1.52
2024-12-04 16:53:13,969 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=65 pTM=0.4 ipTM=0.189 tol=1.42
2024-12-04 16:53:44,322 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=65.2 pTM=0.402 ipTM=0.192 tol=1.12
2024-12-04 16:54:14,651 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=65.1 pTM=0.403 ipTM=0.193 tol=1
2024-12-04 16:54:44,989 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=64.9 pTM=0.401 ipTM=0.193 tol=1.05
2024-12-04 16:55:15,357 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.1 pTM=0.399 ipTM=0.188 tol=1.19
2024-12-04 16:55:45,710 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=65 pTM=0.4 ipTM=0.191 tol=1.12
2024-12-04 16:56:16,090 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.1 pTM=0.401 ipTM=0.191 tol=1.02
2024-12-04 16:56:46,404 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65 pTM=0.401 ipTM=0.191 tol=1.15
2024-12-04 16:57:16,733 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.1 pTM=0.4 ipTM=0.188 tol=1.17
2024-12-04 16:57:47,055 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=65 pTM=0.402 ipTM=0.193 tol=1.21
2024-12-04 16:58:17,343 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=65.1 pTM=0.404 ipTM=0.195 tol=0.961
2024-12-04 16:58:47,646 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=64.9 pTM=0.405 ipTM=0.196 tol=1.31
2024-12-04 16:59:17,932 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=65 pTM=0.406 ipTM=0.199 tol=1.39
2024-12-04 16:59:48,216 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=64.9 pTM=0.408 ipTM=0.202 tol=2.29
2024-12-04 17:00:18,540 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=65 pTM=0.404 ipTM=0.196 tol=1.89
2024-12-04 17:00:48,837 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=65.1 pTM=0.403 ipTM=0.194 tol=2.18
2024-12-04 17:01:19,129 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=65.1 pTM=0.401 ipTM=0.192 tol=1.5
2024-12-04 17:01:49,417 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=65.1 pTM=0.403 ipTM=0.196 tol=1.06
2024-12-04 17:02:19,726 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=65.1 pTM=0.404 ipTM=0.196 tol=1.51
2024-12-04 17:02:50,001 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=65 pTM=0.402 ipTM=0.196 tol=1.17
2024-12-04 17:03:20,290 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=65.1 pTM=0.402 ipTM=0.192 tol=0.849
2024-12-04 17:03:50,611 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=65.1 pTM=0.402 ipTM=0.192 tol=0.688
2024-12-04 17:03:50,612 alphafold2_multimer_v3_model_1_seed_000 took 1079.6s (30 recycles)
2024-12-04 17:04:21,717 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=62.2 pTM=0.392 ipTM=0.181
2024-12-04 17:04:52,018 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=63.2 pTM=0.405 ipTM=0.2 tol=7.83
2024-12-04 17:05:22,403 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=63.4 pTM=0.395 ipTM=0.177 tol=6.85
2024-12-04 17:05:52,798 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=63.6 pTM=0.398 ipTM=0.18 tol=4.49
2024-12-04 17:06:23,187 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=63.7 pTM=0.402 ipTM=0.186 tol=3.9
2024-12-04 17:06:53,552 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=63.6 pTM=0.4 ipTM=0.186 tol=3.8
2024-12-04 17:07:23,958 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=63.7 pTM=0.399 ipTM=0.184 tol=3.49
2024-12-04 17:07:54,291 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=63.8 pTM=0.399 ipTM=0.186 tol=4.35
2024-12-04 17:08:24,685 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=63.9 pTM=0.401 ipTM=0.189 tol=2.56
2024-12-04 17:08:55,105 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=63.8 pTM=0.399 ipTM=0.186 tol=2.28
2024-12-04 17:09:25,477 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=64.1 pTM=0.402 ipTM=0.19 tol=4.37
2024-12-04 17:09:55,877 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.8 pTM=0.399 ipTM=0.186 tol=3.82
2024-12-04 17:10:26,269 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=63.8 pTM=0.402 ipTM=0.194 tol=2.37
2024-12-04 17:10:56,663 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=63.8 pTM=0.4 ipTM=0.191 tol=1.78
2024-12-04 17:11:26,987 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=63.8 pTM=0.4 ipTM=0.188 tol=1.3
2024-12-04 17:11:57,326 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=63.8 pTM=0.402 ipTM=0.191 tol=1.37
2024-12-04 17:12:27,667 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=63.7 pTM=0.401 ipTM=0.188 tol=1.54
2024-12-04 17:12:58,010 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=63.9 pTM=0.401 ipTM=0.185 tol=1.55
2024-12-04 17:13:28,370 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=63.8 pTM=0.401 ipTM=0.19 tol=1.03
2024-12-04 17:13:58,712 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.7 pTM=0.4 ipTM=0.188 tol=1.18
2024-12-04 17:14:29,025 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=63.6 pTM=0.403 ipTM=0.194 tol=1.48
2024-12-04 17:14:59,364 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=63.5 pTM=0.401 ipTM=0.189 tol=1.32
2024-12-04 17:15:29,700 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=63.5 pTM=0.403 ipTM=0.191 tol=1.46
2024-12-04 17:16:00,024 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=63.6 pTM=0.401 ipTM=0.193 tol=1.36
2024-12-04 17:16:30,331 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=63.8 pTM=0.403 ipTM=0.19 tol=1.32
2024-12-04 17:17:00,668 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=63.6 pTM=0.4 ipTM=0.187 tol=1.2
2024-12-04 17:17:31,023 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=63.7 pTM=0.399 ipTM=0.188 tol=1.71
2024-12-04 17:18:01,362 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=63.7 pTM=0.403 ipTM=0.193 tol=4.34
2024-12-04 17:18:31,731 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63.5 pTM=0.4 ipTM=0.19 tol=3.86
2024-12-04 17:19:02,062 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=63.7 pTM=0.401 ipTM=0.187 tol=1.89
2024-12-04 17:19:32,371 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=63.6 pTM=0.403 ipTM=0.19 tol=1.77
2024-12-04 17:19:32,372 alphafold2_multimer_v3_model_2_seed_000 took 941.0s (30 recycles)
2024-12-04 17:20:03,560 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=63.7 pTM=0.398 ipTM=0.183
2024-12-04 17:20:33,970 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=63.6 pTM=0.396 ipTM=0.173 tol=8.52
2024-12-04 17:21:04,348 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=63.1 pTM=0.397 ipTM=0.177 tol=7.47
2024-12-04 17:21:34,693 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=63.6 pTM=0.41 ipTM=0.208 tol=5.59
2024-12-04 17:22:05,019 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=63.8 pTM=0.415 ipTM=0.212 tol=2.89
2024-12-04 17:22:35,378 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=63.9 pTM=0.416 ipTM=0.219 tol=3.73
2024-12-04 17:23:05,704 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=63.8 pTM=0.414 ipTM=0.212 tol=2.76
2024-12-04 17:23:36,031 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=64.1 pTM=0.421 ipTM=0.228 tol=2.64
2024-12-04 17:24:06,322 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=64.1 pTM=0.417 ipTM=0.219 tol=2.21
2024-12-04 17:24:36,596 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=64 pTM=0.416 ipTM=0.217 tol=1.8
2024-12-04 17:25:06,910 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=64.2 pTM=0.415 ipTM=0.212 tol=1.74
2024-12-04 17:25:37,229 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=64.1 pTM=0.416 ipTM=0.217 tol=2
2024-12-04 17:26:07,533 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=64.1 pTM=0.415 ipTM=0.213 tol=2.14
2024-12-04 17:26:37,865 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=64.1 pTM=0.416 ipTM=0.217 tol=2.35
2024-12-04 17:27:08,186 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=64.1 pTM=0.418 ipTM=0.221 tol=1.81
2024-12-04 17:27:38,542 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=64.2 pTM=0.416 ipTM=0.217 tol=2.23
2024-12-04 17:28:08,898 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=64.1 pTM=0.414 ipTM=0.216 tol=1.43
2024-12-04 17:28:39,261 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=64.3 pTM=0.416 ipTM=0.217 tol=1.2
2024-12-04 17:29:09,602 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=64.4 pTM=0.419 ipTM=0.22 tol=1.04
2024-12-04 17:29:39,906 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=64.2 pTM=0.417 ipTM=0.219 tol=0.821
2024-12-04 17:30:10,240 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=64.1 pTM=0.42 ipTM=0.225 tol=4
2024-12-04 17:30:40,620 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=64.1 pTM=0.416 ipTM=0.218 tol=3.68
2024-12-04 17:31:10,971 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=64.2 pTM=0.423 ipTM=0.23 tol=1.19
2024-12-04 17:31:41,352 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=64.2 pTM=0.415 ipTM=0.212 tol=0.855
2024-12-04 17:32:11,703 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=64.4 pTM=0.422 ipTM=0.23 tol=0.866
2024-12-04 17:32:42,034 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=64.1 pTM=0.414 ipTM=0.212 tol=1.11
2024-12-04 17:33:12,394 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=64.1 pTM=0.423 ipTM=0.233 tol=1.25
2024-12-04 17:33:42,763 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=64.1 pTM=0.417 ipTM=0.218 tol=0.84
2024-12-04 17:34:13,126 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=63.9 pTM=0.417 ipTM=0.221 tol=1.13
2024-12-04 17:34:43,506 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=64.1 pTM=0.418 ipTM=0.221 tol=1.34
2024-12-04 17:35:13,851 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=64 pTM=0.42 ipTM=0.227 tol=1.16
2024-12-04 17:35:13,852 alphafold2_multimer_v3_model_3_seed_000 took 940.7s (30 recycles)
2024-12-04 17:35:45,158 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=61.3 pTM=0.379 ipTM=0.157
2024-12-04 17:36:15,621 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=61.9 pTM=0.386 ipTM=0.152 tol=24.6
2024-12-04 17:36:46,075 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=61.8 pTM=0.391 ipTM=0.162 tol=9.74
2024-12-04 17:37:16,527 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=61.9 pTM=0.396 ipTM=0.172 tol=9.27
2024-12-04 17:37:46,932 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=61.9 pTM=0.4 ipTM=0.181 tol=4.98
2024-12-04 17:38:17,362 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=61.8 pTM=0.401 ipTM=0.184 tol=4.11
2024-12-04 17:38:47,792 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=62.1 pTM=0.397 ipTM=0.173 tol=3.91
2024-12-04 17:39:18,229 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=62.2 pTM=0.397 ipTM=0.175 tol=3.1
2024-12-04 17:39:48,670 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=62.1 pTM=0.401 ipTM=0.184 tol=2.45
2024-12-04 17:40:19,089 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=61.7 pTM=0.402 ipTM=0.188 tol=8.89
2024-12-04 17:40:49,523 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=62.2 pTM=0.403 ipTM=0.187 tol=5.97
2024-12-04 17:41:19,976 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=61.8 pTM=0.401 ipTM=0.186 tol=3.4
2024-12-04 17:41:50,424 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=61.8 pTM=0.404 ipTM=0.193 tol=4.18
2024-12-04 17:42:20,856 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=61.6 pTM=0.405 ipTM=0.195 tol=5.07
2024-12-04 17:42:51,255 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=61.8 pTM=0.403 ipTM=0.191 tol=4.62
2024-12-04 17:43:21,709 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=61.7 pTM=0.403 ipTM=0.19 tol=9.27
2024-12-04 17:43:52,176 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=62 pTM=0.401 ipTM=0.185 tol=7.83
2024-12-04 17:44:22,624 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=62 pTM=0.401 ipTM=0.186 tol=4.07
2024-12-04 17:44:53,096 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=62.1 pTM=0.402 ipTM=0.188 tol=9.25
2024-12-04 17:45:23,532 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=62.2 pTM=0.404 ipTM=0.191 tol=5.05
2024-12-04 17:45:53,971 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=61.7 pTM=0.408 ipTM=0.204 tol=3.58
2024-12-04 17:46:24,409 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=61.8 pTM=0.406 ipTM=0.196 tol=4.71
2024-12-04 17:46:54,851 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=61.5 pTM=0.406 ipTM=0.195 tol=2.83
2024-12-04 17:47:25,263 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=61.8 pTM=0.404 ipTM=0.193 tol=1.65
2024-12-04 17:47:55,645 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=61.9 pTM=0.407 ipTM=0.196 tol=3.31
2024-12-04 17:48:26,069 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=61.7 pTM=0.405 ipTM=0.196 tol=3.54
2024-12-04 17:48:56,493 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=61.7 pTM=0.405 ipTM=0.197 tol=1.08
2024-12-04 17:49:26,918 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=61.8 pTM=0.405 ipTM=0.193 tol=2.33
2024-12-04 17:49:57,350 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=61.7 pTM=0.404 ipTM=0.196 tol=4.71
2024-12-04 17:50:27,772 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=61.7 pTM=0.406 ipTM=0.197 tol=4.03
2024-12-04 17:50:58,190 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=61.9 pTM=0.406 ipTM=0.196 tol=2.29
2024-12-04 17:50:58,191 alphafold2_multimer_v3_model_4_seed_000 took 943.5s (30 recycles)
2024-12-04 17:51:29,415 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=61.7 pTM=0.388 ipTM=0.164
2024-12-04 17:51:59,834 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=62.4 pTM=0.401 ipTM=0.181 tol=10.5
2024-12-04 17:52:30,236 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=62.5 pTM=0.399 ipTM=0.176 tol=5.45
2024-12-04 17:53:00,641 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=62.8 pTM=0.403 ipTM=0.182 tol=3.66
2024-12-04 17:53:31,089 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=63.1 pTM=0.406 ipTM=0.192 tol=2.48
2024-12-04 17:54:01,519 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=63.1 pTM=0.406 ipTM=0.187 tol=2.25
2024-12-04 17:54:31,924 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=63.1 pTM=0.407 ipTM=0.194 tol=2.79
2024-12-04 17:55:02,349 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=63.2 pTM=0.409 ipTM=0.2 tol=1.48
2024-12-04 17:55:32,775 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=63.1 pTM=0.408 ipTM=0.2 tol=2.21
2024-12-04 17:56:03,189 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=63 pTM=0.406 ipTM=0.193 tol=3.2
2024-12-04 17:56:33,598 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=63.3 pTM=0.407 ipTM=0.196 tol=2.41
2024-12-04 17:57:03,974 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=63 pTM=0.409 ipTM=0.201 tol=1.89
2024-12-04 17:57:34,331 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=62.9 pTM=0.407 ipTM=0.199 tol=1.49
2024-12-04 17:58:04,704 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=63.2 pTM=0.406 ipTM=0.197 tol=3.12
2024-12-04 17:58:35,023 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=63.2 pTM=0.406 ipTM=0.199 tol=3.09
2024-12-04 17:59:05,359 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=63.1 pTM=0.404 ipTM=0.194 tol=3.24
2024-12-04 17:59:35,734 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=63 pTM=0.404 ipTM=0.194 tol=1.82
2024-12-04 18:00:06,118 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=63.2 pTM=0.406 ipTM=0.196 tol=2.71
2024-12-04 18:00:36,489 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=63.3 pTM=0.406 ipTM=0.197 tol=4.02
2024-12-04 18:01:06,847 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=63.2 pTM=0.409 ipTM=0.2 tol=4.11
2024-12-04 18:01:37,230 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=63.1 pTM=0.41 ipTM=0.203 tol=3.91
2024-12-04 18:02:07,607 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=63.1 pTM=0.407 ipTM=0.197 tol=3.59
2024-12-04 18:02:37,972 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=63 pTM=0.409 ipTM=0.201 tol=2.13
2024-12-04 18:03:08,339 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=63 pTM=0.407 ipTM=0.2 tol=3.55
2024-12-04 18:03:38,693 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=63.1 pTM=0.41 ipTM=0.204 tol=3.96
2024-12-04 18:04:09,056 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.9 pTM=0.406 ipTM=0.198 tol=3.18
2024-12-04 18:04:39,414 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.9 pTM=0.409 ipTM=0.203 tol=3.18
2024-12-04 18:05:09,799 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.9 pTM=0.407 ipTM=0.202 tol=1.53
2024-12-04 18:05:40,159 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.8 pTM=0.405 ipTM=0.196 tol=3.07
2024-12-04 18:06:10,544 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=63 pTM=0.409 ipTM=0.202 tol=1.75
2024-12-04 18:06:40,932 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.9 pTM=0.406 ipTM=0.199 tol=1.83
2024-12-04 18:06:40,933 alphafold2_multimer_v3_model_5_seed_000 took 941.9s (30 recycles)
2024-12-04 18:06:41,726 reranking models by 'multimer' metric
2024-12-04 18:06:45,810 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-04 18:08:30,491 Relaxation took 108.8s
2024-12-04 18:08:30,492 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=64 pTM=0.42 ipTM=0.227
2024-12-04 18:09:51,952 Relaxation took 81.5s
2024-12-04 18:09:51,952 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.9 pTM=0.406 ipTM=0.199
2024-12-04 18:11:09,902 Relaxation took 77.9s
2024-12-04 18:11:09,902 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=61.9 pTM=0.406 ipTM=0.196
2024-12-04 18:12:40,315 Relaxation took 90.4s
2024-12-04 18:12:40,316 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=65.1 pTM=0.402 ipTM=0.192
2024-12-04 18:14:08,401 Relaxation took 88.1s
2024-12-04 18:14:08,402 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63.6 pTM=0.403 ipTM=0.19
2024-12-04 18:14:10,517 Done