2024-12-04 18:42:29,204 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 18:42:29,517 Running on GPU
2024-12-04 18:42:34,331 Found 6 citations for tools or databases
2024-12-04 18:42:34,331 Query 1/1: ARNT_NDOR1 (length 1386)
2024-12-04 18:42:34,712 Sleeping for 9s. Reason: PENDING
2024-12-04 18:42:43,967 Sleeping for 6s. Reason: RUNNING
2024-12-04 18:42:50,219 Sleeping for 6s. Reason: RUNNING
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2024-12-04 18:43:22,253 Sleeping for 7s. Reason: RUNNING
2024-12-04 18:43:29,515 Sleeping for 10s. Reason: RUNNING
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2024-12-04 18:43:58,294 Sleeping for 6s. Reason: RUNNING
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2024-12-04 18:44:41,604 Sleeping for 6s. Reason: RUNNING
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2024-12-04 18:45:29,154 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:45:39,414 Sleeping for 5s. Reason: RUNNING
2024-12-04 18:45:44,675 Sleeping for 6s. Reason: RUNNING
2024-12-04 18:45:50,938 Sleeping for 6s. Reason: RUNNING
2024-12-04 18:45:57,202 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:46:07,461 Sleeping for 9s. Reason: RUNNING
2024-12-04 18:46:16,715 Sleeping for 7s. Reason: RUNNING
2024-12-04 18:46:23,979 Sleeping for 8s. Reason: RUNNING
2024-12-04 18:46:34,168 Sleeping for 6s. Reason: PENDING
2024-12-04 18:46:40,426 Sleeping for 10s. Reason: PENDING
2024-12-04 18:46:50,685 Sleeping for 8s. Reason: PENDING
2024-12-04 18:46:58,946 Sleeping for 7s. Reason: PENDING
2024-12-04 18:47:06,205 Sleeping for 8s. Reason: PENDING
2024-12-04 18:47:14,460 Sleeping for 9s. Reason: PENDING
2024-12-04 18:47:23,722 Sleeping for 7s. Reason: RUNNING
2024-12-04 18:47:30,984 Sleeping for 7s. Reason: RUNNING
2024-12-04 18:47:38,237 Sleeping for 9s. Reason: RUNNING
2024-12-04 18:47:47,506 Sleeping for 5s. Reason: RUNNING
2024-12-04 18:47:52,763 Sleeping for 7s. Reason: RUNNING
2024-12-04 18:48:00,025 Sleeping for 6s. Reason: RUNNING
2024-12-04 18:48:06,276 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:48:16,540 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:48:26,800 Sleeping for 6s. Reason: RUNNING
2024-12-04 18:48:33,067 Sleeping for 7s. Reason: RUNNING
2024-12-04 18:48:40,318 Sleeping for 8s. Reason: RUNNING
2024-12-04 18:48:48,576 Sleeping for 6s. Reason: RUNNING
2024-12-04 18:48:54,835 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:49:05,090 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:49:15,354 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:49:25,614 Sleeping for 7s. Reason: RUNNING
2024-12-04 18:49:32,872 Sleeping for 5s. Reason: RUNNING
2024-12-04 18:49:38,124 Sleeping for 5s. Reason: RUNNING
2024-12-04 18:49:43,377 Sleeping for 5s. Reason: RUNNING
2024-12-04 18:49:48,631 Sleeping for 10s. Reason: RUNNING
2024-12-04 18:50:03,542 Setting max_seq=508, max_extra_seq=2048
2024-12-04 18:53:24,427 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=58 pTM=0.495 ipTM=0.194
2024-12-04 18:54:16,154 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=57.9 pTM=0.498 ipTM=0.194 tol=12.9
2024-12-04 18:55:08,056 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=57.7 pTM=0.496 ipTM=0.194 tol=7.42
2024-12-04 18:56:00,069 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=57.8 pTM=0.494 ipTM=0.191 tol=4.07
2024-12-04 18:56:52,108 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=57.9 pTM=0.497 ipTM=0.195 tol=4.46
2024-12-04 18:57:44,111 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=58.2 pTM=0.492 ipTM=0.188 tol=3.55
2024-12-04 18:58:36,150 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=58 pTM=0.494 ipTM=0.191 tol=4.05
2024-12-04 18:59:28,217 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=58.1 pTM=0.492 ipTM=0.186 tol=4.23
2024-12-04 19:00:20,303 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=58.1 pTM=0.492 ipTM=0.187 tol=3.72
2024-12-04 19:01:12,460 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=58.2 pTM=0.493 ipTM=0.186 tol=4.5
2024-12-04 19:02:04,596 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=58 pTM=0.493 ipTM=0.189 tol=3.73
2024-12-04 19:02:56,756 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=58.1 pTM=0.493 ipTM=0.188 tol=3.87
2024-12-04 19:03:48,873 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=58 pTM=0.495 ipTM=0.194 tol=3.5
2024-12-04 19:04:40,982 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=58.1 pTM=0.495 ipTM=0.197 tol=3.38
2024-12-04 19:05:33,068 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=58.3 pTM=0.496 ipTM=0.194 tol=3.39
2024-12-04 19:06:25,071 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=58.2 pTM=0.496 ipTM=0.193 tol=2.54
2024-12-04 19:07:17,059 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=58.3 pTM=0.495 ipTM=0.191 tol=3.33
2024-12-04 19:08:09,035 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=58.3 pTM=0.496 ipTM=0.192 tol=3.65
2024-12-04 19:09:01,017 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=58.3 pTM=0.497 ipTM=0.195 tol=3.59
2024-12-04 19:09:53,016 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=58.2 pTM=0.496 ipTM=0.192 tol=3.68
2024-12-04 19:10:45,004 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=58.5 pTM=0.495 ipTM=0.191 tol=3.47
2024-12-04 19:11:37,037 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=58.3 pTM=0.497 ipTM=0.195 tol=2.58
2024-12-04 19:12:29,109 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=58.2 pTM=0.496 ipTM=0.193 tol=2.8
2024-12-04 19:13:21,166 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=58.3 pTM=0.494 ipTM=0.19 tol=3.95
2024-12-04 19:14:13,222 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=58.1 pTM=0.495 ipTM=0.192 tol=3.1
2024-12-04 19:15:05,263 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.3 pTM=0.494 ipTM=0.19 tol=2.86
2024-12-04 19:15:57,298 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=58.2 pTM=0.493 ipTM=0.188 tol=3.16
2024-12-04 19:16:49,343 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=58.3 pTM=0.496 ipTM=0.195 tol=2.95
2024-12-04 19:17:41,346 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=58.2 pTM=0.493 ipTM=0.19 tol=3.23
2024-12-04 19:18:33,380 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=58.3 pTM=0.495 ipTM=0.192 tol=2.56
2024-12-04 19:19:25,455 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58.2 pTM=0.495 ipTM=0.191 tol=3.04
2024-12-04 19:19:25,456 alphafold2_multimer_v3_model_1_seed_000 took 1755.8s (30 recycles)
2024-12-04 19:20:18,683 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=57.5 pTM=0.482 ipTM=0.178
2024-12-04 19:21:10,802 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=58 pTM=0.491 ipTM=0.198 tol=9.05
2024-12-04 19:22:02,940 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=57.8 pTM=0.49 ipTM=0.181 tol=7.42
2024-12-04 19:22:55,111 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=57.8 pTM=0.487 ipTM=0.174 tol=6.54
2024-12-04 19:23:47,269 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=57.8 pTM=0.486 ipTM=0.173 tol=5.55
2024-12-04 19:24:39,422 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=57.9 pTM=0.483 ipTM=0.17 tol=5.4
2024-12-04 19:25:31,571 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=58.2 pTM=0.484 ipTM=0.17 tol=7.2
2024-12-04 19:26:23,721 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=58.5 pTM=0.482 ipTM=0.166 tol=5.48
2024-12-04 19:27:15,922 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=58.6 pTM=0.483 ipTM=0.17 tol=3.61
2024-12-04 19:28:08,142 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=58.7 pTM=0.484 ipTM=0.169 tol=4.03
2024-12-04 19:29:00,358 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=58.6 pTM=0.482 ipTM=0.17 tol=3.59
2024-12-04 19:29:52,549 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=58.5 pTM=0.482 ipTM=0.169 tol=4.02
2024-12-04 19:30:44,761 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=58.5 pTM=0.482 ipTM=0.171 tol=3.54
2024-12-04 19:31:36,952 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=58.4 pTM=0.482 ipTM=0.171 tol=2.82
2024-12-04 19:32:29,142 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=58.3 pTM=0.484 ipTM=0.171 tol=2.83
2024-12-04 19:33:21,331 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=58.4 pTM=0.482 ipTM=0.168 tol=3.11
2024-12-04 19:34:13,544 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=58.5 pTM=0.481 ipTM=0.168 tol=1.78
2024-12-04 19:35:05,724 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=58.6 pTM=0.482 ipTM=0.17 tol=2.4
2024-12-04 19:35:57,965 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=58.7 pTM=0.484 ipTM=0.168 tol=2.43
2024-12-04 19:36:50,208 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=58.6 pTM=0.482 ipTM=0.168 tol=2.06
2024-12-04 19:37:42,391 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=58.4 pTM=0.482 ipTM=0.171 tol=1.77
2024-12-04 19:38:34,535 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=58.6 pTM=0.482 ipTM=0.172 tol=2.63
2024-12-04 19:39:26,680 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=58.3 pTM=0.482 ipTM=0.17 tol=1.69
2024-12-04 19:40:18,828 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=58.6 pTM=0.483 ipTM=0.17 tol=2.58
2024-12-04 19:41:10,981 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=58.4 pTM=0.481 ipTM=0.17 tol=1.45
2024-12-04 19:42:03,170 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=58.4 pTM=0.481 ipTM=0.172 tol=1.68
2024-12-04 19:42:55,379 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=58.4 pTM=0.482 ipTM=0.17 tol=1.32
2024-12-04 19:43:47,597 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=58.4 pTM=0.482 ipTM=0.168 tol=2.83
2024-12-04 19:44:39,772 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=58.6 pTM=0.482 ipTM=0.167 tol=2.17
2024-12-04 19:45:31,965 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=58.4 pTM=0.482 ipTM=0.168 tol=1.49
2024-12-04 19:46:24,141 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=58.4 pTM=0.481 ipTM=0.168 tol=2.28
2024-12-04 19:46:24,142 alphafold2_multimer_v3_model_2_seed_000 took 1617.5s (30 recycles)
2024-12-04 19:47:17,499 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=58.7 pTM=0.492 ipTM=0.281
2024-12-04 19:48:09,757 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=58.4 pTM=0.498 ipTM=0.2 tol=19.5
2024-12-04 19:49:02,105 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=58.5 pTM=0.492 ipTM=0.186 tol=8.34
2024-12-04 19:49:54,503 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=58.4 pTM=0.497 ipTM=0.284 tol=9.59
2024-12-04 19:50:46,859 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=58.6 pTM=0.496 ipTM=0.206 tol=5.79
2024-12-04 19:51:39,199 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=58.7 pTM=0.494 ipTM=0.209 tol=5.44
2024-12-04 19:52:31,495 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=58.4 pTM=0.493 ipTM=0.188 tol=5.27
2024-12-04 19:53:23,796 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=58.5 pTM=0.5 ipTM=0.207 tol=4.22
2024-12-04 19:54:16,107 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=58.5 pTM=0.496 ipTM=0.193 tol=3.7
2024-12-04 19:55:08,383 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=58.4 pTM=0.497 ipTM=0.196 tol=4.12
2024-12-04 19:56:00,691 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=58.5 pTM=0.497 ipTM=0.211 tol=4.57
2024-12-04 19:56:52,998 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=58.4 pTM=0.495 ipTM=0.19 tol=5
2024-12-04 19:57:45,197 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=58.4 pTM=0.496 ipTM=0.222 tol=3.17
2024-12-04 19:58:37,334 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=58.1 pTM=0.495 ipTM=0.191 tol=3.89
2024-12-04 19:59:29,488 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=58.2 pTM=0.494 ipTM=0.194 tol=3.67
2024-12-04 20:00:21,696 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=58.3 pTM=0.498 ipTM=0.214 tol=3.95
2024-12-04 20:01:13,913 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=58.4 pTM=0.495 ipTM=0.19 tol=4.5
2024-12-04 20:02:06,128 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=58 pTM=0.497 ipTM=0.204 tol=4.13
2024-12-04 20:02:58,409 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=58.1 pTM=0.495 ipTM=0.191 tol=4.13
2024-12-04 20:03:50,714 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=58.4 pTM=0.496 ipTM=0.191 tol=3.76
2024-12-04 20:04:43,035 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=58 pTM=0.495 ipTM=0.194 tol=3.43
2024-12-04 20:05:35,341 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=58.2 pTM=0.495 ipTM=0.194 tol=4.34
2024-12-04 20:06:27,640 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=57.9 pTM=0.495 ipTM=0.195 tol=4.66
2024-12-04 20:07:19,926 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=58.2 pTM=0.495 ipTM=0.196 tol=4.72
2024-12-04 20:08:12,159 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=58.4 pTM=0.498 ipTM=0.197 tol=3.26
2024-12-04 20:09:04,385 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=58.1 pTM=0.494 ipTM=0.19 tol=3.49
2024-12-04 20:09:56,612 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=58.1 pTM=0.493 ipTM=0.203 tol=5.02
2024-12-04 20:10:48,786 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=58.4 pTM=0.496 ipTM=0.205 tol=4.28
2024-12-04 20:11:40,957 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=58.2 pTM=0.493 ipTM=0.19 tol=4.28
2024-12-04 20:12:33,185 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=58.3 pTM=0.494 ipTM=0.214 tol=3.4
2024-12-04 20:13:25,442 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=58.2 pTM=0.494 ipTM=0.199 tol=3.79
2024-12-04 20:13:25,443 alphafold2_multimer_v3_model_3_seed_000 took 1620.2s (30 recycles)
2024-12-04 20:14:18,740 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=56.7 pTM=0.482 ipTM=0.205
2024-12-04 20:15:10,984 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=57.1 pTM=0.49 ipTM=0.198 tol=12.8
2024-12-04 20:16:03,251 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=56.7 pTM=0.489 ipTM=0.188 tol=10.7
2024-12-04 20:16:55,519 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=57 pTM=0.494 ipTM=0.256 tol=7.19
2024-12-04 20:17:47,788 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=56.9 pTM=0.493 ipTM=0.198 tol=7.18
2024-12-04 20:18:40,053 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=57 pTM=0.495 ipTM=0.21 tol=6.3
2024-12-04 20:19:32,316 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56.8 pTM=0.495 ipTM=0.22 tol=7.37
2024-12-04 20:20:24,599 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=56.9 pTM=0.491 ipTM=0.241 tol=6.77
2024-12-04 20:21:16,831 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=56.9 pTM=0.491 ipTM=0.273 tol=3.79
2024-12-04 20:22:09,052 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=57.3 pTM=0.5 ipTM=0.271 tol=4.18
2024-12-04 20:23:01,272 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=57.1 pTM=0.494 ipTM=0.264 tol=4.93
2024-12-04 20:23:53,492 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=57.2 pTM=0.496 ipTM=0.317 tol=4.99
2024-12-04 20:24:45,705 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=57.2 pTM=0.497 ipTM=0.264 tol=4.13
2024-12-04 20:25:37,935 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=57 pTM=0.5 ipTM=0.291 tol=3.58
2024-12-04 20:26:30,228 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=57.2 pTM=0.499 ipTM=0.269 tol=3.28
2024-12-04 20:27:22,434 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=56.7 pTM=0.511 ipTM=0.377 tol=6.26
2024-12-04 20:28:14,685 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=56.9 pTM=0.493 ipTM=0.252 tol=6.57
2024-12-04 20:29:06,902 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=56.8 pTM=0.499 ipTM=0.254 tol=5.5
2024-12-04 20:29:59,119 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=56.8 pTM=0.507 ipTM=0.331 tol=5.01
2024-12-04 20:30:51,343 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=56.9 pTM=0.493 ipTM=0.278 tol=4.27
2024-12-04 20:31:43,592 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=57.1 pTM=0.494 ipTM=0.267 tol=3.05
2024-12-04 20:32:35,808 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=56.9 pTM=0.503 ipTM=0.296 tol=3.98
2024-12-04 20:33:28,034 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=56.7 pTM=0.493 ipTM=0.26 tol=6.21
2024-12-04 20:34:20,290 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=56.9 pTM=0.495 ipTM=0.304 tol=5.62
2024-12-04 20:35:12,500 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=56.9 pTM=0.501 ipTM=0.312 tol=6.43
2024-12-04 20:36:04,671 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=56.9 pTM=0.492 ipTM=0.301 tol=6.29
2024-12-04 20:36:56,823 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=56.8 pTM=0.493 ipTM=0.263 tol=3.73
2024-12-04 20:37:49,027 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=57 pTM=0.493 ipTM=0.291 tol=4.14
2024-12-04 20:38:41,276 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=56.8 pTM=0.501 ipTM=0.29 tol=4.96
2024-12-04 20:39:33,538 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=56.8 pTM=0.493 ipTM=0.279 tol=5.81
2024-12-04 20:40:25,776 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=57.1 pTM=0.496 ipTM=0.279 tol=5.43
2024-12-04 20:40:25,777 alphafold2_multimer_v3_model_4_seed_000 took 1619.2s (30 recycles)
2024-12-04 20:41:19,135 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=57 pTM=0.476 ipTM=0.175
2024-12-04 20:42:11,408 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=56.7 pTM=0.51 ipTM=0.412 tol=13
2024-12-04 20:43:03,782 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=57.2 pTM=0.488 ipTM=0.181 tol=10
2024-12-04 20:43:56,153 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=57.4 pTM=0.484 ipTM=0.177 tol=7
2024-12-04 20:44:48,534 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=57.8 pTM=0.486 ipTM=0.179 tol=4.39
2024-12-04 20:45:40,917 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=57.6 pTM=0.483 ipTM=0.169 tol=3.99
2024-12-04 20:46:33,263 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=57.6 pTM=0.482 ipTM=0.174 tol=4.66
2024-12-04 20:47:25,660 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=58 pTM=0.482 ipTM=0.168 tol=4.57
2024-12-04 20:48:18,054 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=57.7 pTM=0.48 ipTM=0.168 tol=4.04
2024-12-04 20:49:10,439 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=57.8 pTM=0.484 ipTM=0.169 tol=3.16
2024-12-04 20:50:02,825 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=57.7 pTM=0.484 ipTM=0.178 tol=6.48
2024-12-04 20:50:55,207 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=57.7 pTM=0.485 ipTM=0.176 tol=8.05
2024-12-04 20:51:47,552 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=57.5 pTM=0.485 ipTM=0.177 tol=5.74
2024-12-04 20:52:39,851 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=57 pTM=0.491 ipTM=0.235 tol=6.95
2024-12-04 20:53:32,183 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=57.2 pTM=0.487 ipTM=0.185 tol=7.74
2024-12-04 20:54:24,499 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=57 pTM=0.49 ipTM=0.199 tol=6.17
2024-12-04 20:55:16,835 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=57 pTM=0.489 ipTM=0.198 tol=5.79
2024-12-04 20:56:09,192 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=57.1 pTM=0.489 ipTM=0.194 tol=6.65
2024-12-04 20:57:01,548 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=57.5 pTM=0.486 ipTM=0.174 tol=7.89
2024-12-04 20:57:53,899 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=57.3 pTM=0.486 ipTM=0.193 tol=9.58
2024-12-04 20:58:46,262 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=57.4 pTM=0.487 ipTM=0.198 tol=7.88
2024-12-04 20:59:38,615 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=57.5 pTM=0.484 ipTM=0.183 tol=7.85
2024-12-04 21:00:30,964 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=57.2 pTM=0.482 ipTM=0.174 tol=9.41
2024-12-04 21:01:23,269 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=56.9 pTM=0.5 ipTM=0.32 tol=6.96
2024-12-04 21:02:15,584 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=57.3 pTM=0.489 ipTM=0.208 tol=7.7
2024-12-04 21:03:07,903 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=57.6 pTM=0.486 ipTM=0.185 tol=3.96
2024-12-04 21:04:00,190 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=56.8 pTM=0.5 ipTM=0.286 tol=7.19
2024-12-04 21:04:52,522 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=57.4 pTM=0.485 ipTM=0.185 tol=4.18
2024-12-04 21:05:44,804 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=57.4 pTM=0.493 ipTM=0.247 tol=7.24
2024-12-04 21:06:37,084 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=58.1 pTM=0.516 ipTM=0.484 tol=5.57
2024-12-04 21:07:29,398 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=57.6 pTM=0.497 ipTM=0.317 tol=6.04
2024-12-04 21:07:29,399 alphafold2_multimer_v3_model_5_seed_000 took 1622.5s (30 recycles)
2024-12-04 21:07:30,540 reranking models by 'multimer' metric
2024-12-04 21:07:36,280 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-04 21:10:51,196 Relaxation took 200.7s
2024-12-04 21:10:51,196 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=57.6 pTM=0.497 ipTM=0.317
2024-12-04 21:13:31,959 Relaxation took 160.8s
2024-12-04 21:13:31,960 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=57.1 pTM=0.496 ipTM=0.279
2024-12-04 21:16:59,733 Relaxation took 207.8s
2024-12-04 21:16:59,734 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=58.2 pTM=0.494 ipTM=0.199
2024-12-04 21:18:58,771 Relaxation took 119.0s
2024-12-04 21:18:58,771 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.2 pTM=0.495 ipTM=0.191
2024-12-04 21:21:24,907 Relaxation took 146.1s
2024-12-04 21:21:24,907 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=58.4 pTM=0.481 ipTM=0.168
2024-12-04 21:21:28,083 Done