2024-12-04 22:21:55,004 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 22:21:55,350 Running on GPU
2024-12-04 22:22:01,149 Found 6 citations for tools or databases
2024-12-04 22:22:01,149 Query 1/1: ASB9_CKMT1A (length 711)
2024-12-04 22:22:01,448 Sleeping for 9s. Reason: PENDING
2024-12-04 22:22:10,706 Sleeping for 6s. Reason: RUNNING
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2024-12-04 22:22:47,997 Sleeping for 7s. Reason: RUNNING
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2024-12-04 22:23:02,662 Sleeping for 9s. Reason: RUNNING
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2024-12-04 22:23:19,182 Sleeping for 10s. Reason: RUNNING
2024-12-04 22:23:29,440 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:23:36,696 Sleeping for 8s. Reason: RUNNING
2024-12-04 22:23:46,823 Sleeping for 6s. Reason: PENDING
2024-12-04 22:23:53,076 Sleeping for 5s. Reason: RUNNING
2024-12-04 22:23:58,329 Sleeping for 8s. Reason: RUNNING
2024-12-04 22:24:06,587 Sleeping for 9s. Reason: RUNNING
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2024-12-04 22:24:24,101 Sleeping for 9s. Reason: RUNNING
2024-12-04 22:24:36,255 Setting max_seq=508, max_extra_seq=2048
2024-12-04 22:27:27,053 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.9 pTM=0.57 ipTM=0.205
2024-12-04 22:27:37,392 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.8 pTM=0.802 ipTM=0.796 tol=3.45
2024-12-04 22:27:47,838 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=84.8 pTM=0.818 ipTM=0.827 tol=2.66
2024-12-04 22:27:58,266 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=85 pTM=0.817 ipTM=0.826 tol=1.92
2024-12-04 22:28:08,742 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.5 pTM=0.822 ipTM=0.832 tol=1.21
2024-12-04 22:28:19,230 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.6 pTM=0.822 ipTM=0.832 tol=1.16
2024-12-04 22:28:29,742 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.8 pTM=0.823 ipTM=0.833 tol=0.812
2024-12-04 22:28:40,238 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85.6 pTM=0.822 ipTM=0.832 tol=1.38
2024-12-04 22:28:50,758 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=85.8 pTM=0.823 ipTM=0.832 tol=1.53
2024-12-04 22:29:01,280 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=85.8 pTM=0.823 ipTM=0.832 tol=0.618
2024-12-04 22:29:11,816 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=85.8 pTM=0.823 ipTM=0.832 tol=0.444
2024-12-04 22:29:11,816 alphafold2_multimer_v3_model_1_seed_000 took 269.4s (10 recycles)
2024-12-04 22:29:22,508 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.8 pTM=0.582 ipTM=0.22
2024-12-04 22:29:32,876 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.9 pTM=0.733 ipTM=0.661 tol=4.06
2024-12-04 22:29:43,352 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.4 pTM=0.821 ipTM=0.82 tol=3.25
2024-12-04 22:29:53,832 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.6 pTM=0.82 ipTM=0.821 tol=1.78
2024-12-04 22:30:04,347 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=85.1 pTM=0.825 ipTM=0.825 tol=0.758
2024-12-04 22:30:14,854 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=85.2 pTM=0.826 ipTM=0.825 tol=0.422
2024-12-04 22:30:14,855 alphafold2_multimer_v3_model_2_seed_000 took 62.7s (5 recycles)
2024-12-04 22:30:25,543 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.7 pTM=0.582 ipTM=0.25
2024-12-04 22:30:36,064 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=85.2 pTM=0.827 ipTM=0.818 tol=4.61
2024-12-04 22:30:46,655 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.9 pTM=0.834 ipTM=0.835 tol=2.39
2024-12-04 22:30:57,208 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=86 pTM=0.834 ipTM=0.833 tol=1.14
2024-12-04 22:31:07,768 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=86.6 pTM=0.84 ipTM=0.837 tol=1.51
2024-12-04 22:31:18,301 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=86.4 pTM=0.839 ipTM=0.833 tol=2.88
2024-12-04 22:31:28,833 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=86.5 pTM=0.84 ipTM=0.833 tol=1.74
2024-12-04 22:31:39,380 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=86.8 pTM=0.843 ipTM=0.837 tol=0.817
2024-12-04 22:31:49,910 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=86.7 pTM=0.842 ipTM=0.834 tol=0.574
2024-12-04 22:32:00,441 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=86.8 pTM=0.843 ipTM=0.835 tol=1.31
2024-12-04 22:32:10,963 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=86.7 pTM=0.843 ipTM=0.834 tol=1.27
2024-12-04 22:32:21,487 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=86.8 pTM=0.844 ipTM=0.835 tol=0.788
2024-12-04 22:32:32,019 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=86.9 pTM=0.846 ipTM=0.837 tol=0.466
2024-12-04 22:32:32,020 alphafold2_multimer_v3_model_3_seed_000 took 136.8s (12 recycles)
2024-12-04 22:32:42,738 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77 pTM=0.578 ipTM=0.27
2024-12-04 22:32:53,123 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80 pTM=0.648 ipTM=0.449 tol=6.91
2024-12-04 22:33:03,648 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=84.9 pTM=0.812 ipTM=0.822 tol=2.59
2024-12-04 22:33:14,173 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85.1 pTM=0.815 ipTM=0.829 tol=1.24
2024-12-04 22:33:24,696 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=85.4 pTM=0.817 ipTM=0.832 tol=1.13
2024-12-04 22:33:35,206 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=85.3 pTM=0.814 ipTM=0.828 tol=0.38
2024-12-04 22:33:35,207 alphafold2_multimer_v3_model_4_seed_000 took 62.9s (5 recycles)
2024-12-04 22:33:45,924 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.3 pTM=0.611 ipTM=0.312
2024-12-04 22:33:56,351 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.3 pTM=0.761 ipTM=0.729 tol=5.78
2024-12-04 22:34:06,900 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=84.8 pTM=0.82 ipTM=0.829 tol=1.91
2024-12-04 22:34:17,427 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.8 pTM=0.821 ipTM=0.831 tol=1.28
2024-12-04 22:34:27,970 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=85 pTM=0.822 ipTM=0.833 tol=1.42
2024-12-04 22:34:38,498 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.1 pTM=0.822 ipTM=0.833 tol=1.2
2024-12-04 22:34:49,011 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=85 pTM=0.821 ipTM=0.832 tol=1.33
2024-12-04 22:34:59,539 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.1 pTM=0.823 ipTM=0.833 tol=0.219
2024-12-04 22:34:59,540 alphafold2_multimer_v3_model_5_seed_000 took 84.0s (7 recycles)
2024-12-04 22:34:59,855 reranking models by 'multimer' metric
2024-12-04 22:35:04,440 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-04 22:35:26,136 Relaxation took 26.3s
2024-12-04 22:35:26,136 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=86.9 pTM=0.846 ipTM=0.837
2024-12-04 22:35:44,479 Relaxation took 18.3s
2024-12-04 22:35:44,479 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.1 pTM=0.823 ipTM=0.833
2024-12-04 22:36:01,886 Relaxation took 17.4s
2024-12-04 22:36:01,886 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85.8 pTM=0.823 ipTM=0.832
2024-12-04 22:36:23,213 Relaxation took 21.3s
2024-12-04 22:36:23,213 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=85.3 pTM=0.814 ipTM=0.828
2024-12-04 22:36:51,525 Relaxation took 28.3s
2024-12-04 22:36:51,526 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=85.2 pTM=0.826 ipTM=0.825
2024-12-04 22:36:52,962 Done