2024-12-04 22:37:52,308 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 22:37:52,626 Running on GPU
2024-12-04 22:37:58,357 Found 6 citations for tools or databases
2024-12-04 22:37:58,357 Query 1/1: ATG16L1_KIFC1 (length 1280)
2024-12-04 22:37:58,686 Sleeping for 7s. Reason: PENDING
2024-12-04 22:38:05,945 Sleeping for 10s. Reason: RUNNING
2024-12-04 22:38:16,220 Sleeping for 7s. Reason: RUNNING
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2024-12-04 22:38:48,262 Sleeping for 5s. Reason: RUNNING
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2024-12-04 22:40:50,379 Sleeping for 8s. Reason: RUNNING
2024-12-04 22:40:58,636 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:41:05,890 Sleeping for 5s. Reason: RUNNING
2024-12-04 22:41:11,142 Sleeping for 8s. Reason: RUNNING
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2024-12-04 22:41:36,922 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:41:44,176 Sleeping for 5s. Reason: RUNNING
2024-12-04 22:41:49,429 Sleeping for 10s. Reason: RUNNING
2024-12-04 22:41:59,690 Sleeping for 10s. Reason: RUNNING
2024-12-04 22:42:09,953 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:42:17,212 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:42:24,476 Sleeping for 9s. Reason: RUNNING
2024-12-04 22:42:33,742 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:42:51,741 Sleeping for 5s. Reason: PENDING
2024-12-04 22:42:56,994 Sleeping for 8s. Reason: RUNNING
2024-12-04 22:43:05,256 Sleeping for 9s. Reason: RUNNING
2024-12-04 22:43:14,516 Sleeping for 5s. Reason: RUNNING
2024-12-04 22:43:19,771 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:43:27,028 Sleeping for 6s. Reason: RUNNING
2024-12-04 22:43:33,289 Sleeping for 10s. Reason: RUNNING
2024-12-04 22:43:43,553 Sleeping for 5s. Reason: RUNNING
2024-12-04 22:43:48,805 Sleeping for 6s. Reason: RUNNING
2024-12-04 22:43:55,067 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:44:02,326 Sleeping for 9s. Reason: RUNNING
2024-12-04 22:44:11,581 Sleeping for 7s. Reason: RUNNING
2024-12-04 22:44:18,839 Sleeping for 8s. Reason: RUNNING
2024-12-04 22:44:27,094 Sleeping for 6s. Reason: RUNNING
2024-12-04 22:44:33,344 Sleeping for 10s. Reason: RUNNING
2024-12-04 22:44:43,598 Sleeping for 5s. Reason: RUNNING
2024-12-04 22:44:48,852 Sleeping for 6s. Reason: RUNNING
2024-12-04 22:44:55,112 Sleeping for 9s. Reason: RUNNING
2024-12-04 22:45:11,557 Setting max_seq=508, max_extra_seq=2048
2024-12-04 22:47:37,196 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=65.9 pTM=0.419 ipTM=0.198
2024-12-04 22:48:15,235 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=66.1 pTM=0.417 ipTM=0.191 tol=11.2
2024-12-04 22:48:53,349 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=66.7 pTM=0.423 ipTM=0.221 tol=4.87
2024-12-04 22:49:31,493 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=66.6 pTM=0.428 ipTM=0.224 tol=4.95
2024-12-04 22:50:09,674 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=66.6 pTM=0.426 ipTM=0.225 tol=3.55
2024-12-04 22:50:47,848 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=66.4 pTM=0.425 ipTM=0.222 tol=2.11
2024-12-04 22:51:26,039 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=66.5 pTM=0.425 ipTM=0.224 tol=3.08
2024-12-04 22:52:04,245 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=66.6 pTM=0.424 ipTM=0.22 tol=4.66
2024-12-04 22:52:42,480 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=66.1 pTM=0.423 ipTM=0.215 tol=9.38
2024-12-04 22:53:20,718 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=65.2 pTM=0.426 ipTM=0.226 tol=33.8
2024-12-04 22:53:58,970 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=64.8 pTM=0.433 ipTM=0.238 tol=15.7
2024-12-04 22:54:37,280 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=65.4 pTM=0.427 ipTM=0.231 tol=14.3
2024-12-04 22:55:15,544 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=66.1 pTM=0.427 ipTM=0.223 tol=14.2
2024-12-04 22:55:53,821 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.9 pTM=0.423 ipTM=0.228 tol=15.5
2024-12-04 22:56:32,057 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=66.1 pTM=0.424 ipTM=0.215 tol=12.3
2024-12-04 22:57:10,285 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=66 pTM=0.424 ipTM=0.225 tol=7.25
2024-12-04 22:57:48,464 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.8 pTM=0.429 ipTM=0.229 tol=8.01
2024-12-04 22:58:26,645 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.3 pTM=0.426 ipTM=0.236 tol=4.3
2024-12-04 22:59:04,820 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=66.1 pTM=0.424 ipTM=0.22 tol=6.93
2024-12-04 22:59:42,989 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=66 pTM=0.423 ipTM=0.227 tol=4.09
2024-12-04 23:00:21,167 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=66 pTM=0.421 ipTM=0.214 tol=3.5
2024-12-04 23:00:59,350 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=66 pTM=0.421 ipTM=0.211 tol=3.31
2024-12-04 23:01:37,528 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=66 pTM=0.419 ipTM=0.211 tol=3.42
2024-12-04 23:02:15,703 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=66.2 pTM=0.418 ipTM=0.208 tol=2.54
2024-12-04 23:02:53,885 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=66.3 pTM=0.42 ipTM=0.211 tol=4
2024-12-04 23:03:32,074 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=66.4 pTM=0.419 ipTM=0.204 tol=4.65
2024-12-04 23:04:10,274 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=66.5 pTM=0.416 ipTM=0.201 tol=5.52
2024-12-04 23:04:48,492 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=66.4 pTM=0.41 ipTM=0.194 tol=3.23
2024-12-04 23:05:26,704 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=66.4 pTM=0.408 ipTM=0.192 tol=2.9
2024-12-04 23:06:04,916 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=66.4 pTM=0.41 ipTM=0.19 tol=2.38
2024-12-04 23:06:43,141 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=66.4 pTM=0.41 ipTM=0.186 tol=2.9
2024-12-04 23:06:43,142 alphafold2_multimer_v3_model_1_seed_000 took 1288.1s (30 recycles)
2024-12-04 23:07:22,303 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.9 pTM=0.412 ipTM=0.166
2024-12-04 23:08:00,523 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=67.3 pTM=0.418 ipTM=0.177 tol=12.9
2024-12-04 23:08:38,752 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=67.6 pTM=0.415 ipTM=0.177 tol=4.22
2024-12-04 23:09:16,985 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=67.5 pTM=0.413 ipTM=0.178 tol=4.86
2024-12-04 23:09:55,250 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=67.7 pTM=0.416 ipTM=0.181 tol=3.46
2024-12-04 23:10:33,515 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.3 pTM=0.416 ipTM=0.187 tol=4.91
2024-12-04 23:11:11,771 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67.4 pTM=0.417 ipTM=0.189 tol=4.49
2024-12-04 23:11:50,041 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=67.7 pTM=0.421 ipTM=0.193 tol=5.81
2024-12-04 23:12:28,330 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=66.2 pTM=0.415 ipTM=0.19 tol=25.2
2024-12-04 23:13:06,453 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=69.6 pTM=0.462 ipTM=0.417 tol=21.9
2024-12-04 23:13:44,532 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=70.4 pTM=0.491 ipTM=0.509 tol=5.57
2024-12-04 23:14:22,603 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=70.6 pTM=0.485 ipTM=0.517 tol=3.51
2024-12-04 23:15:00,683 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=70.7 pTM=0.488 ipTM=0.532 tol=2.55
2024-12-04 23:15:38,756 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=70.6 pTM=0.486 ipTM=0.529 tol=1.75
2024-12-04 23:16:16,826 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=70.7 pTM=0.489 ipTM=0.54 tol=1.91
2024-12-04 23:16:54,899 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=70.7 pTM=0.489 ipTM=0.545 tol=1.11
2024-12-04 23:17:32,947 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=70.8 pTM=0.49 ipTM=0.545 tol=1.51
2024-12-04 23:18:10,960 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=70.9 pTM=0.491 ipTM=0.551 tol=1.79
2024-12-04 23:18:48,952 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=70.8 pTM=0.492 ipTM=0.552 tol=1.31
2024-12-04 23:19:26,969 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=70.8 pTM=0.489 ipTM=0.548 tol=2.49
2024-12-04 23:20:04,997 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=70.8 pTM=0.491 ipTM=0.552 tol=1.3
2024-12-04 23:20:43,041 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=70.8 pTM=0.489 ipTM=0.552 tol=3.91
2024-12-04 23:21:21,096 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=70.9 pTM=0.494 ipTM=0.554 tol=2.38
2024-12-04 23:21:59,151 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=70.9 pTM=0.492 ipTM=0.552 tol=1.73
2024-12-04 23:22:37,207 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=70.9 pTM=0.493 ipTM=0.556 tol=1.58
2024-12-04 23:23:15,263 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=70.9 pTM=0.492 ipTM=0.552 tol=1.88
2024-12-04 23:23:53,337 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=70.8 pTM=0.492 ipTM=0.552 tol=1.87
2024-12-04 23:24:31,411 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=70.8 pTM=0.49 ipTM=0.549 tol=1.72
2024-12-04 23:25:09,491 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=70.9 pTM=0.49 ipTM=0.554 tol=1.96
2024-12-04 23:25:47,549 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=70.8 pTM=0.49 ipTM=0.557 tol=2.57
2024-12-04 23:26:25,592 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=70.9 pTM=0.492 ipTM=0.554 tol=1.88
2024-12-04 23:26:25,593 alphafold2_multimer_v3_model_2_seed_000 took 1181.5s (30 recycles)
2024-12-04 23:27:04,899 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.2 pTM=0.396 ipTM=0.28
2024-12-04 23:27:43,131 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=70.9 pTM=0.405 ipTM=0.326 tol=15.7
2024-12-04 23:28:21,352 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=70.7 pTM=0.403 ipTM=0.337 tol=18.3
2024-12-04 23:28:59,556 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=70.4 pTM=0.401 ipTM=0.341 tol=11.5
2024-12-04 23:29:37,774 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.4 pTM=0.406 ipTM=0.343 tol=10.8
2024-12-04 23:30:16,015 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=70.2 pTM=0.403 ipTM=0.338 tol=12
2024-12-04 23:30:54,264 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=70.1 pTM=0.408 ipTM=0.34 tol=15.7
2024-12-04 23:31:32,492 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=70.2 pTM=0.416 ipTM=0.347 tol=9.15
2024-12-04 23:32:10,717 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=70.2 pTM=0.418 ipTM=0.351 tol=2.47
2024-12-04 23:32:48,944 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=70.2 pTM=0.416 ipTM=0.354 tol=1.74
2024-12-04 23:33:27,181 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=70.2 pTM=0.414 ipTM=0.35 tol=2.13
2024-12-04 23:34:05,416 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=70.1 pTM=0.416 ipTM=0.35 tol=1.45
2024-12-04 23:34:43,660 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=70.2 pTM=0.413 ipTM=0.347 tol=3.41
2024-12-04 23:35:21,941 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=70 pTM=0.411 ipTM=0.341 tol=1.73
2024-12-04 23:36:00,228 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=70.1 pTM=0.412 ipTM=0.344 tol=1.45
2024-12-04 23:36:38,488 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=69.9 pTM=0.412 ipTM=0.345 tol=1.35
2024-12-04 23:37:16,730 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=69.9 pTM=0.411 ipTM=0.343 tol=1.38
2024-12-04 23:37:54,966 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=70.2 pTM=0.412 ipTM=0.345 tol=1.97
2024-12-04 23:38:33,203 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=70.2 pTM=0.41 ipTM=0.343 tol=2.51
2024-12-04 23:39:11,422 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=70.2 pTM=0.41 ipTM=0.344 tol=1.25
2024-12-04 23:39:49,667 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=70.2 pTM=0.409 ipTM=0.342 tol=1.86
2024-12-04 23:40:27,914 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=70.3 pTM=0.409 ipTM=0.342 tol=1.28
2024-12-04 23:41:06,148 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=70.2 pTM=0.409 ipTM=0.344 tol=1.69
2024-12-04 23:41:44,397 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=70.2 pTM=0.409 ipTM=0.342 tol=1.54
2024-12-04 23:42:22,636 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=70.3 pTM=0.41 ipTM=0.342 tol=2.35
2024-12-04 23:43:00,913 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=70.4 pTM=0.407 ipTM=0.342 tol=3.77
2024-12-04 23:43:39,172 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=70.4 pTM=0.405 ipTM=0.335 tol=4.68
2024-12-04 23:44:17,455 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=70.4 pTM=0.403 ipTM=0.336 tol=3.98
2024-12-04 23:44:55,736 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=70.4 pTM=0.4 ipTM=0.333 tol=2.16
2024-12-04 23:45:34,009 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=70.4 pTM=0.4 ipTM=0.331 tol=1.51
2024-12-04 23:46:12,316 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=70.5 pTM=0.4 ipTM=0.33 tol=6.19
2024-12-04 23:46:12,317 alphafold2_multimer_v3_model_3_seed_000 took 1185.7s (30 recycles)
2024-12-04 23:46:51,648 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=65.9 pTM=0.386 ipTM=0.228
2024-12-04 23:47:29,913 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=67.6 pTM=0.409 ipTM=0.262 tol=18.9
2024-12-04 23:48:08,217 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=67.8 pTM=0.409 ipTM=0.251 tol=10.2
2024-12-04 23:48:46,538 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=67.9 pTM=0.401 ipTM=0.244 tol=7.21
2024-12-04 23:49:24,864 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=68 pTM=0.401 ipTM=0.25 tol=4.7
2024-12-04 23:50:03,174 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=67.9 pTM=0.402 ipTM=0.251 tol=2.92
2024-12-04 23:50:41,431 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=68.1 pTM=0.405 ipTM=0.259 tol=4.4
2024-12-04 23:51:19,663 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=68.2 pTM=0.407 ipTM=0.266 tol=2.3
2024-12-04 23:51:57,931 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=68.1 pTM=0.406 ipTM=0.267 tol=3.21
2024-12-04 23:52:36,208 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=67.9 pTM=0.407 ipTM=0.262 tol=3.04
2024-12-04 23:53:14,506 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=68.2 pTM=0.408 ipTM=0.27 tol=3.39
2024-12-04 23:53:52,769 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=68 pTM=0.41 ipTM=0.269 tol=3.37
2024-12-04 23:54:31,051 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=68 pTM=0.407 ipTM=0.264 tol=3.92
2024-12-04 23:55:09,344 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=67.7 pTM=0.408 ipTM=0.26 tol=3.2
2024-12-04 23:55:47,647 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=67.6 pTM=0.407 ipTM=0.256 tol=4.25
2024-12-04 23:56:25,940 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=67.6 pTM=0.409 ipTM=0.26 tol=2.07
2024-12-04 23:57:04,233 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=67.6 pTM=0.409 ipTM=0.256 tol=3.16
2024-12-04 23:57:42,522 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=67.8 pTM=0.408 ipTM=0.263 tol=2.7
2024-12-04 23:58:20,800 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=67.8 pTM=0.409 ipTM=0.261 tol=2.04
2024-12-04 23:58:59,080 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=67.8 pTM=0.412 ipTM=0.261 tol=1.96
2024-12-04 23:59:37,336 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=67.8 pTM=0.414 ipTM=0.262 tol=1.89
2024-12-05 00:00:15,652 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=68.1 pTM=0.415 ipTM=0.268 tol=1.83
2024-12-05 00:00:53,985 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=67.9 pTM=0.413 ipTM=0.262 tol=1.6
2024-12-05 00:01:32,312 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=67.8 pTM=0.411 ipTM=0.258 tol=1.61
2024-12-05 00:02:10,655 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=67.7 pTM=0.411 ipTM=0.257 tol=1.64
2024-12-05 00:02:48,979 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=67.8 pTM=0.411 ipTM=0.263 tol=1.61
2024-12-05 00:03:27,246 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=68 pTM=0.41 ipTM=0.265 tol=1.9
2024-12-05 00:04:05,518 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=67.9 pTM=0.41 ipTM=0.266 tol=2.45
2024-12-05 00:04:43,777 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=67.7 pTM=0.41 ipTM=0.258 tol=1.85
2024-12-05 00:05:22,061 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=67.9 pTM=0.411 ipTM=0.261 tol=2.48
2024-12-05 00:06:00,350 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=67.8 pTM=0.413 ipTM=0.26 tol=3.14
2024-12-05 00:06:00,351 alphafold2_multimer_v3_model_4_seed_000 took 1187.0s (30 recycles)
2024-12-05 00:06:39,768 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.4 pTM=0.394 ipTM=0.14
2024-12-05 00:07:18,074 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=68.9 pTM=0.406 ipTM=0.336 tol=41.4
2024-12-05 00:07:56,379 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68.1 pTM=0.401 ipTM=0.333 tol=34.2
2024-12-05 00:08:34,692 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=67.7 pTM=0.396 ipTM=0.312 tol=34.6
2024-12-05 00:09:13,028 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=69.1 pTM=0.396 ipTM=0.316 tol=51.4
2024-12-05 00:09:51,326 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=69.2 pTM=0.394 ipTM=0.318 tol=10.3
2024-12-05 00:10:29,616 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=68.2 pTM=0.395 ipTM=0.318 tol=39.6
2024-12-05 00:11:07,961 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=68.9 pTM=0.395 ipTM=0.314 tol=39.4
2024-12-05 00:11:46,299 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=69.4 pTM=0.396 ipTM=0.316 tol=5.22
2024-12-05 00:12:24,642 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=69.3 pTM=0.394 ipTM=0.319 tol=4.28
2024-12-05 00:13:02,967 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=69.4 pTM=0.395 ipTM=0.32 tol=4.52
2024-12-05 00:13:41,271 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=69.4 pTM=0.394 ipTM=0.318 tol=3.05
2024-12-05 00:14:19,570 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=69.4 pTM=0.394 ipTM=0.32 tol=5.76
2024-12-05 00:14:57,854 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=69.9 pTM=0.393 ipTM=0.313 tol=5.05
2024-12-05 00:15:36,124 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=69.9 pTM=0.394 ipTM=0.314 tol=3.71
2024-12-05 00:16:14,392 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=69.7 pTM=0.395 ipTM=0.312 tol=2.64
2024-12-05 00:16:52,663 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=69.8 pTM=0.394 ipTM=0.312 tol=3.61
2024-12-05 00:17:30,937 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=69.9 pTM=0.393 ipTM=0.314 tol=2.67
2024-12-05 00:18:09,241 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=69.9 pTM=0.392 ipTM=0.312 tol=4.07
2024-12-05 00:18:47,537 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=69.9 pTM=0.391 ipTM=0.312 tol=4.41
2024-12-05 00:19:25,815 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=69.7 pTM=0.392 ipTM=0.317 tol=4.58
2024-12-05 00:20:04,114 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=69.9 pTM=0.394 ipTM=0.315 tol=3.37
2024-12-05 00:20:42,445 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=70.2 pTM=0.393 ipTM=0.318 tol=2.62
2024-12-05 00:21:20,758 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=69.4 pTM=0.393 ipTM=0.315 tol=3.95
2024-12-05 00:21:59,049 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=69.8 pTM=0.393 ipTM=0.316 tol=3.21
2024-12-05 00:22:37,344 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=70.2 pTM=0.394 ipTM=0.32 tol=5.68
2024-12-05 00:23:15,621 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=70 pTM=0.393 ipTM=0.315 tol=2.74
2024-12-05 00:23:53,910 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=70 pTM=0.393 ipTM=0.315 tol=3.54
2024-12-05 00:24:32,181 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=69.9 pTM=0.393 ipTM=0.313 tol=2.46
2024-12-05 00:25:10,462 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=69.9 pTM=0.391 ipTM=0.313 tol=7.12
2024-12-05 00:25:48,778 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=68.2 pTM=0.392 ipTM=0.308 tol=49.4
2024-12-05 00:25:48,779 alphafold2_multimer_v3_model_5_seed_000 took 1187.4s (30 recycles)
2024-12-05 00:25:49,763 reranking models by 'multimer' metric
2024-12-05 00:25:55,214 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 00:27:29,697 Relaxation took 99.9s
2024-12-05 00:27:29,698 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=70.9 pTM=0.492 ipTM=0.554
2024-12-05 00:29:39,792 Relaxation took 130.1s
2024-12-05 00:29:39,792 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=70.5 pTM=0.4 ipTM=0.33
2024-12-05 00:39:05,512 Relaxation took 565.7s
2024-12-05 00:39:05,514 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=68.2 pTM=0.392 ipTM=0.308
2024-12-05 00:40:37,355 Relaxation took 91.8s
2024-12-05 00:40:37,355 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=67.8 pTM=0.413 ipTM=0.26
2024-12-05 00:42:31,961 Relaxation took 114.6s
2024-12-05 00:42:31,961 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=66.4 pTM=0.41 ipTM=0.186
2024-12-05 00:42:34,538 Done