2024-12-04 23:00:30,062 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 23:00:30,434 Running on GPU
2024-12-04 23:00:35,355 Found 6 citations for tools or databases
2024-12-04 23:00:35,356 Query 1/1: AURKA_C1orf135 (length 760)
2024-12-04 23:00:35,645 Sleeping for 8s. Reason: PENDING
2024-12-04 23:00:43,907 Sleeping for 6s. Reason: RUNNING
2024-12-04 23:00:50,159 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:00:58,413 Sleeping for 9s. Reason: RUNNING
2024-12-04 23:01:07,674 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:01:15,928 Sleeping for 7s. Reason: RUNNING
2024-12-04 23:01:23,179 Sleeping for 6s. Reason: RUNNING
2024-12-04 23:01:29,432 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:01:37,688 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:01:45,955 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:01:56,224 Sleeping for 7s. Reason: RUNNING
2024-12-04 23:02:03,479 Sleeping for 7s. Reason: RUNNING
2024-12-04 23:02:10,730 Sleeping for 6s. Reason: RUNNING
2024-12-04 23:02:16,989 Sleeping for 9s. Reason: RUNNING
2024-12-04 23:02:26,249 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:02:36,508 Sleeping for 5s. Reason: RUNNING
2024-12-04 23:02:41,758 Sleeping for 9s. Reason: RUNNING
2024-12-04 23:02:51,026 Sleeping for 6s. Reason: RUNNING
2024-12-04 23:02:57,283 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:03:07,544 Sleeping for 9s. Reason: RUNNING
2024-12-04 23:03:19,016 Sleeping for 7s. Reason: PENDING
2024-12-04 23:03:26,269 Sleeping for 9s. Reason: RUNNING
2024-12-04 23:03:35,534 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:03:45,793 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:03:56,052 Sleeping for 5s. Reason: RUNNING
2024-12-04 23:04:01,311 Sleeping for 6s. Reason: RUNNING
2024-12-04 23:04:07,567 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:04:17,830 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:04:28,093 Sleeping for 9s. Reason: RUNNING
2024-12-04 23:04:37,347 Sleeping for 7s. Reason: RUNNING
2024-12-04 23:04:44,596 Sleeping for 7s. Reason: RUNNING
2024-12-04 23:04:51,850 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:05:04,655 Setting max_seq=508, max_extra_seq=1835
2024-12-04 23:07:49,330 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=41.8 pTM=0.448 ipTM=0.253
2024-12-04 23:08:02,880 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=42.3 pTM=0.441 ipTM=0.226 tol=10.8
2024-12-04 23:08:16,418 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=42.7 pTM=0.439 ipTM=0.23 tol=11.7
2024-12-04 23:08:29,983 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=42.6 pTM=0.431 ipTM=0.223 tol=11.6
2024-12-04 23:08:43,573 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=43 pTM=0.434 ipTM=0.241 tol=7.45
2024-12-04 23:08:57,181 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=43 pTM=0.441 ipTM=0.259 tol=7.9
2024-12-04 23:09:10,817 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=42.9 pTM=0.435 ipTM=0.24 tol=8.37
2024-12-04 23:09:24,435 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=42.5 pTM=0.431 ipTM=0.228 tol=6.29
2024-12-04 23:09:38,060 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=42.6 pTM=0.433 ipTM=0.23 tol=7.68
2024-12-04 23:09:51,695 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=42.7 pTM=0.432 ipTM=0.223 tol=9.42
2024-12-04 23:10:05,327 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=42.9 pTM=0.431 ipTM=0.227 tol=4.26
2024-12-04 23:10:18,955 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=42.9 pTM=0.434 ipTM=0.253 tol=3.81
2024-12-04 23:10:32,590 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=42.5 pTM=0.432 ipTM=0.242 tol=6.66
2024-12-04 23:10:46,239 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=43.2 pTM=0.437 ipTM=0.263 tol=7.67
2024-12-04 23:10:59,872 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=42.4 pTM=0.425 ipTM=0.199 tol=4.64
2024-12-04 23:11:13,527 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=43.5 pTM=0.438 ipTM=0.303 tol=7.26
2024-12-04 23:11:27,157 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=42.9 pTM=0.433 ipTM=0.26 tol=4.38
2024-12-04 23:11:40,816 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=43.6 pTM=0.439 ipTM=0.286 tol=3.22
2024-12-04 23:11:54,450 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=42.6 pTM=0.428 ipTM=0.188 tol=7.02
2024-12-04 23:12:08,084 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=43.4 pTM=0.442 ipTM=0.269 tol=3.01
2024-12-04 23:12:21,714 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=42.6 pTM=0.429 ipTM=0.187 tol=6.48
2024-12-04 23:12:35,352 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=43.4 pTM=0.439 ipTM=0.277 tol=3.16
2024-12-04 23:12:48,988 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=42.9 pTM=0.438 ipTM=0.332 tol=3.12
2024-12-04 23:13:02,648 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=43.4 pTM=0.442 ipTM=0.229 tol=3.87
2024-12-04 23:13:16,285 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=42.3 pTM=0.43 ipTM=0.185 tol=4.18
2024-12-04 23:13:29,914 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=44.3 pTM=0.451 ipTM=0.344 tol=6.11
2024-12-04 23:13:43,562 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=42.8 pTM=0.435 ipTM=0.219 tol=3.81
2024-12-04 23:13:57,224 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=43.4 pTM=0.445 ipTM=0.237 tol=3.06
2024-12-04 23:14:10,873 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=42.4 pTM=0.435 ipTM=0.217 tol=2.86
2024-12-04 23:14:24,519 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=43.4 pTM=0.446 ipTM=0.251 tol=6.05
2024-12-04 23:14:38,167 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=42.7 pTM=0.437 ipTM=0.231 tol=3.04
2024-12-04 23:14:38,167 alphafold2_multimer_v3_model_1_seed_000 took 564.9s (30 recycles)
2024-12-04 23:14:52,307 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=42.8 pTM=0.444 ipTM=0.396
2024-12-04 23:15:05,967 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=42.3 pTM=0.427 ipTM=0.199 tol=10.4
2024-12-04 23:15:19,662 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=43.3 pTM=0.431 ipTM=0.181 tol=9.36
2024-12-04 23:15:33,331 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=43.2 pTM=0.427 ipTM=0.183 tol=7.22
2024-12-04 23:15:47,019 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=43.9 pTM=0.431 ipTM=0.191 tol=6.22
2024-12-04 23:16:00,700 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=42.6 pTM=0.425 ipTM=0.177 tol=5.93
2024-12-04 23:16:14,395 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=43.8 pTM=0.432 ipTM=0.213 tol=7.09
2024-12-04 23:16:28,059 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=42.8 pTM=0.427 ipTM=0.188 tol=5.25
2024-12-04 23:16:41,748 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=43.6 pTM=0.432 ipTM=0.218 tol=9.41
2024-12-04 23:16:55,401 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=42.8 pTM=0.423 ipTM=0.177 tol=8.8
2024-12-04 23:17:09,088 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=44 pTM=0.432 ipTM=0.211 tol=6.53
2024-12-04 23:17:22,760 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=42.9 pTM=0.429 ipTM=0.188 tol=10.8
2024-12-04 23:17:36,429 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=43.4 pTM=0.435 ipTM=0.239 tol=6.49
2024-12-04 23:17:50,079 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=43.1 pTM=0.433 ipTM=0.252 tol=3.67
2024-12-04 23:18:03,740 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=43.7 pTM=0.437 ipTM=0.271 tol=4.66
2024-12-04 23:18:17,399 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=43.3 pTM=0.439 ipTM=0.273 tol=3.74
2024-12-04 23:18:31,050 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=43.7 pTM=0.439 ipTM=0.287 tol=3.45
2024-12-04 23:18:44,709 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=43.6 pTM=0.437 ipTM=0.282 tol=4.48
2024-12-04 23:18:58,365 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=43.7 pTM=0.438 ipTM=0.278 tol=3.16
2024-12-04 23:19:12,025 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=43.9 pTM=0.443 ipTM=0.28 tol=4.84
2024-12-04 23:19:25,676 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=43.8 pTM=0.439 ipTM=0.284 tol=3.57
2024-12-04 23:19:39,331 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=43.9 pTM=0.44 ipTM=0.288 tol=3.19
2024-12-04 23:19:52,983 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=43.5 pTM=0.438 ipTM=0.277 tol=3.45
2024-12-04 23:20:06,633 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=44 pTM=0.441 ipTM=0.278 tol=2.34
2024-12-04 23:20:20,280 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=43.3 pTM=0.435 ipTM=0.272 tol=4.09
2024-12-04 23:20:33,947 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=45 pTM=0.456 ipTM=0.35 tol=6.04
2024-12-04 23:20:47,585 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=43.4 pTM=0.44 ipTM=0.261 tol=5.05
2024-12-04 23:21:01,256 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=44.4 pTM=0.443 ipTM=0.3 tol=7.78
2024-12-04 23:21:14,885 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=43.6 pTM=0.437 ipTM=0.271 tol=3.45
2024-12-04 23:21:28,554 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=44.8 pTM=0.447 ipTM=0.347 tol=4.51
2024-12-04 23:21:42,199 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=43.8 pTM=0.45 ipTM=0.326 tol=8.02
2024-12-04 23:21:42,200 alphafold2_multimer_v3_model_2_seed_000 took 423.6s (30 recycles)
2024-12-04 23:21:56,407 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=42.8 pTM=0.442 ipTM=0.275
2024-12-04 23:22:10,137 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=42.2 pTM=0.426 ipTM=0.195 tol=18.8
2024-12-04 23:22:23,858 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=42.5 pTM=0.43 ipTM=0.258 tol=7.93
2024-12-04 23:22:37,599 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=42.2 pTM=0.43 ipTM=0.235 tol=4.25
2024-12-04 23:22:51,299 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=41.9 pTM=0.423 ipTM=0.188 tol=6
2024-12-04 23:23:05,004 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=42 pTM=0.426 ipTM=0.192 tol=5.92
2024-12-04 23:23:18,717 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=42.4 pTM=0.43 ipTM=0.277 tol=9.38
2024-12-04 23:23:32,429 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=42 pTM=0.427 ipTM=0.195 tol=5.07
2024-12-04 23:23:46,157 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=42.3 pTM=0.431 ipTM=0.227 tol=3.89
2024-12-04 23:23:59,877 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=42 pTM=0.427 ipTM=0.208 tol=5.29
2024-12-04 23:24:13,600 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=42.2 pTM=0.429 ipTM=0.188 tol=6.17
2024-12-04 23:24:27,323 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=42.7 pTM=0.438 ipTM=0.368 tol=5.02
2024-12-04 23:24:41,034 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=42.9 pTM=0.438 ipTM=0.242 tol=8.63
2024-12-04 23:24:54,733 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=43 pTM=0.444 ipTM=0.323 tol=4.88
2024-12-04 23:25:08,461 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=43.2 pTM=0.437 ipTM=0.258 tol=7.66
2024-12-04 23:25:22,157 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=42.9 pTM=0.441 ipTM=0.324 tol=6.75
2024-12-04 23:25:35,851 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=42.7 pTM=0.434 ipTM=0.293 tol=5.83
2024-12-04 23:25:49,544 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=43.3 pTM=0.446 ipTM=0.368 tol=5.52
2024-12-04 23:26:03,266 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=43.8 pTM=0.453 ipTM=0.354 tol=10.6
2024-12-04 23:26:16,986 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=42.5 pTM=0.438 ipTM=0.253 tol=10.2
2024-12-04 23:26:30,708 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=43.5 pTM=0.445 ipTM=0.387 tol=4.53
2024-12-04 23:26:44,412 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=42.7 pTM=0.441 ipTM=0.342 tol=3.64
2024-12-04 23:26:58,109 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=43 pTM=0.441 ipTM=0.329 tol=7.61
2024-12-04 23:27:11,825 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=42.6 pTM=0.438 ipTM=0.318 tol=6.57
2024-12-04 23:27:25,531 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=43.2 pTM=0.442 ipTM=0.349 tol=8.88
2024-12-04 23:27:39,239 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=42.8 pTM=0.438 ipTM=0.317 tol=8.3
2024-12-04 23:27:52,941 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=43.4 pTM=0.446 ipTM=0.34 tol=6.92
2024-12-04 23:28:06,644 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=42.6 pTM=0.434 ipTM=0.312 tol=5.49
2024-12-04 23:28:20,351 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=43.2 pTM=0.442 ipTM=0.364 tol=7.31
2024-12-04 23:28:34,056 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=42.5 pTM=0.434 ipTM=0.307 tol=7
2024-12-04 23:28:47,771 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=43.5 pTM=0.444 ipTM=0.388 tol=5.97
2024-12-04 23:28:47,771 alphafold2_multimer_v3_model_3_seed_000 took 425.1s (30 recycles)
2024-12-04 23:29:01,916 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=42.4 pTM=0.435 ipTM=0.194
2024-12-04 23:29:15,596 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=42.7 pTM=0.437 ipTM=0.179 tol=8.95
2024-12-04 23:29:29,262 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=42.3 pTM=0.442 ipTM=0.186 tol=9.26
2024-12-04 23:29:42,931 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=42.8 pTM=0.442 ipTM=0.208 tol=7.88
2024-12-04 23:29:56,585 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=42.5 pTM=0.443 ipTM=0.298 tol=3.81
2024-12-04 23:30:10,263 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=42.7 pTM=0.435 ipTM=0.236 tol=6.54
2024-12-04 23:30:23,919 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=42.4 pTM=0.443 ipTM=0.21 tol=6.24
2024-12-04 23:30:37,600 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=43 pTM=0.444 ipTM=0.299 tol=3.73
2024-12-04 23:30:51,279 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=42.2 pTM=0.436 ipTM=0.255 tol=3.89
2024-12-04 23:31:04,944 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=42.8 pTM=0.443 ipTM=0.242 tol=2.27
2024-12-04 23:31:18,621 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=42.7 pTM=0.44 ipTM=0.254 tol=3.81
2024-12-04 23:31:32,282 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=42.8 pTM=0.444 ipTM=0.247 tol=2.78
2024-12-04 23:31:45,970 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=42.2 pTM=0.436 ipTM=0.224 tol=7.73
2024-12-04 23:31:59,643 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=42.9 pTM=0.446 ipTM=0.246 tol=4.69
2024-12-04 23:32:13,322 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=42.4 pTM=0.437 ipTM=0.216 tol=4.69
2024-12-04 23:32:26,998 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=42.8 pTM=0.442 ipTM=0.226 tol=4.6
2024-12-04 23:32:40,667 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=42.2 pTM=0.433 ipTM=0.192 tol=4.86
2024-12-04 23:32:54,347 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=43 pTM=0.443 ipTM=0.232 tol=5.75
2024-12-04 23:33:08,037 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=42.5 pTM=0.44 ipTM=0.275 tol=6.24
2024-12-04 23:33:21,720 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=43.2 pTM=0.445 ipTM=0.238 tol=5.54
2024-12-04 23:33:35,390 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=42 pTM=0.437 ipTM=0.203 tol=5.3
2024-12-04 23:33:49,085 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=42.6 pTM=0.439 ipTM=0.202 tol=6.27
2024-12-04 23:34:02,764 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=41.8 pTM=0.43 ipTM=0.171 tol=6.81
2024-12-04 23:34:16,448 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=42.8 pTM=0.444 ipTM=0.216 tol=4.07
2024-12-04 23:34:30,115 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=42 pTM=0.437 ipTM=0.22 tol=4.71
2024-12-04 23:34:43,813 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=42.7 pTM=0.439 ipTM=0.198 tol=3.49
2024-12-04 23:34:57,477 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=41.9 pTM=0.435 ipTM=0.183 tol=3.93
2024-12-04 23:35:11,169 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=42.9 pTM=0.447 ipTM=0.275 tol=5.33
2024-12-04 23:35:24,837 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=42.1 pTM=0.439 ipTM=0.246 tol=3.05
2024-12-04 23:35:38,525 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=42.9 pTM=0.443 ipTM=0.276 tol=3.22
2024-12-04 23:35:52,201 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=42.1 pTM=0.435 ipTM=0.232 tol=5.5
2024-12-04 23:35:52,201 alphafold2_multimer_v3_model_4_seed_000 took 424.0s (30 recycles)
2024-12-04 23:36:06,426 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=41.9 pTM=0.43 ipTM=0.259
2024-12-04 23:36:20,165 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=43.1 pTM=0.444 ipTM=0.37 tol=12.8
2024-12-04 23:36:33,926 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=43.5 pTM=0.437 ipTM=0.291 tol=9.23
2024-12-04 23:36:47,648 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=42.2 pTM=0.427 ipTM=0.259 tol=9.59
2024-12-04 23:37:01,378 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=42.9 pTM=0.432 ipTM=0.228 tol=5.66
2024-12-04 23:37:15,095 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=42 pTM=0.429 ipTM=0.284 tol=5.89
2024-12-04 23:37:28,851 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=43.3 pTM=0.438 ipTM=0.273 tol=3.63
2024-12-04 23:37:42,578 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=42.2 pTM=0.43 ipTM=0.241 tol=5.32
2024-12-04 23:37:56,301 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=42.8 pTM=0.433 ipTM=0.238 tol=4.71
2024-12-04 23:38:10,012 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=41.8 pTM=0.429 ipTM=0.243 tol=7.14
2024-12-04 23:38:23,757 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=43 pTM=0.438 ipTM=0.258 tol=5.98
2024-12-04 23:38:37,472 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=41.8 pTM=0.428 ipTM=0.234 tol=7.98
2024-12-04 23:38:51,237 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=42.9 pTM=0.434 ipTM=0.221 tol=4.49
2024-12-04 23:39:04,963 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=41.7 pTM=0.423 ipTM=0.207 tol=7.89
2024-12-04 23:39:18,714 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=43.2 pTM=0.436 ipTM=0.222 tol=9.96
2024-12-04 23:39:32,442 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=42.2 pTM=0.43 ipTM=0.273 tol=12.1
2024-12-04 23:39:46,188 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=42.9 pTM=0.433 ipTM=0.249 tol=5.47
2024-12-04 23:39:59,929 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=41.7 pTM=0.422 ipTM=0.213 tol=4.14
2024-12-04 23:40:13,681 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=43.2 pTM=0.439 ipTM=0.256 tol=4.84
2024-12-04 23:40:27,401 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=41.9 pTM=0.426 ipTM=0.214 tol=4.35
2024-12-04 23:40:41,152 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=42.9 pTM=0.434 ipTM=0.259 tol=4.28
2024-12-04 23:40:54,890 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=41.6 pTM=0.422 ipTM=0.21 tol=4.25
2024-12-04 23:41:08,647 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=42.9 pTM=0.431 ipTM=0.229 tol=8.05
2024-12-04 23:41:22,381 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=42.2 pTM=0.43 ipTM=0.253 tol=6.34
2024-12-04 23:41:36,116 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=42.8 pTM=0.43 ipTM=0.246 tol=6.25
2024-12-04 23:41:49,848 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=42.2 pTM=0.43 ipTM=0.245 tol=7.26
2024-12-04 23:42:03,604 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=42.9 pTM=0.431 ipTM=0.25 tol=4.77
2024-12-04 23:42:17,343 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=41.8 pTM=0.425 ipTM=0.21 tol=3.74
2024-12-04 23:42:31,084 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=42.4 pTM=0.427 ipTM=0.254 tol=6.44
2024-12-04 23:42:44,823 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=41.7 pTM=0.424 ipTM=0.214 tol=6.23
2024-12-04 23:42:58,553 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=42.9 pTM=0.432 ipTM=0.254 tol=3.59
2024-12-04 23:42:58,553 alphafold2_multimer_v3_model_5_seed_000 took 425.9s (30 recycles)
2024-12-04 23:42:59,022 reranking models by 'multimer' metric
2024-12-04 23:43:03,907 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-04 23:44:23,875 Relaxation took 84.9s
2024-12-04 23:44:23,875 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=43.5 pTM=0.444 ipTM=0.388
2024-12-04 23:48:12,622 Relaxation took 228.7s
2024-12-04 23:48:12,623 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=43.8 pTM=0.45 ipTM=0.326
2024-12-04 23:49:25,921 Relaxation took 73.3s
2024-12-04 23:49:25,921 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=42.9 pTM=0.432 ipTM=0.254
2024-12-04 23:50:48,632 Relaxation took 82.7s
2024-12-04 23:50:48,632 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=42.1 pTM=0.435 ipTM=0.232
2024-12-04 23:52:16,212 Relaxation took 87.6s
2024-12-04 23:52:16,212 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=42.7 pTM=0.437 ipTM=0.231
2024-12-04 23:52:18,331 Done