2024-12-04 23:01:02,812 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-04 23:01:03,124 Running on GPU
2024-12-04 23:01:08,413 Found 6 citations for tools or databases
2024-12-04 23:01:08,413 Query 1/1: AURKA_CELA2B (length 672)
2024-12-04 23:01:08,766 Sleeping for 6s. Reason: PENDING
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2024-12-04 23:04:18,944 Sleeping for 8s. Reason: RUNNING
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2024-12-04 23:04:35,457 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:04:52,722 Sleeping for 7s. Reason: PENDING
2024-12-04 23:04:59,976 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:05:08,237 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:05:18,494 Sleeping for 6s. Reason: RUNNING
2024-12-04 23:05:24,748 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:05:33,002 Sleeping for 5s. Reason: RUNNING
2024-12-04 23:05:38,259 Sleeping for 5s. Reason: RUNNING
2024-12-04 23:05:43,510 Sleeping for 10s. Reason: RUNNING
2024-12-04 23:05:53,768 Sleeping for 5s. Reason: RUNNING
2024-12-04 23:05:59,025 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:06:07,283 Sleeping for 8s. Reason: RUNNING
2024-12-04 23:06:15,540 Sleeping for 5s. Reason: RUNNING
2024-12-04 23:06:20,789 Sleeping for 9s. Reason: RUNNING
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2024-12-04 23:06:38,303 Sleeping for 9s. Reason: RUNNING
2024-12-04 23:06:51,861 Setting max_seq=508, max_extra_seq=2048
2024-12-04 23:08:53,023 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.8 pTM=0.456 ipTM=0.164
2024-12-04 23:09:01,381 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.5 pTM=0.466 ipTM=0.193 tol=8.28
2024-12-04 23:09:09,726 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.8 pTM=0.454 ipTM=0.158 tol=5.41
2024-12-04 23:09:18,078 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=68.7 pTM=0.461 ipTM=0.174 tol=3.59
2024-12-04 23:09:26,439 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69 pTM=0.459 ipTM=0.177 tol=1.92
2024-12-04 23:09:34,797 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=68.9 pTM=0.458 ipTM=0.175 tol=3.28
2024-12-04 23:09:43,164 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68.9 pTM=0.459 ipTM=0.186 tol=1.41
2024-12-04 23:09:51,528 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=68.5 pTM=0.455 ipTM=0.167 tol=2.83
2024-12-04 23:09:59,897 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=68.6 pTM=0.456 ipTM=0.179 tol=1.4
2024-12-04 23:10:08,274 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=68.1 pTM=0.454 ipTM=0.17 tol=1.29
2024-12-04 23:10:16,655 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=68.4 pTM=0.456 ipTM=0.181 tol=1.54
2024-12-04 23:10:25,035 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=68.3 pTM=0.453 ipTM=0.167 tol=1.29
2024-12-04 23:10:33,420 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=68.1 pTM=0.454 ipTM=0.173 tol=1.28
2024-12-04 23:10:41,805 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=68.1 pTM=0.455 ipTM=0.174 tol=1.55
2024-12-04 23:10:50,194 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=67.9 pTM=0.456 ipTM=0.178 tol=1.04
2024-12-04 23:10:58,585 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=67.8 pTM=0.452 ipTM=0.166 tol=1.35
2024-12-04 23:11:06,971 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=67.4 pTM=0.453 ipTM=0.166 tol=1.46
2024-12-04 23:11:15,363 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=67.9 pTM=0.459 ipTM=0.183 tol=1.45
2024-12-04 23:11:23,758 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=67.3 pTM=0.455 ipTM=0.178 tol=1.18
2024-12-04 23:11:32,165 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=67.6 pTM=0.457 ipTM=0.185 tol=1.47
2024-12-04 23:11:40,563 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=67.4 pTM=0.454 ipTM=0.177 tol=1.67
2024-12-04 23:11:48,963 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=67.8 pTM=0.467 ipTM=0.216 tol=1.71
2024-12-04 23:11:57,366 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=67.4 pTM=0.46 ipTM=0.203 tol=1.78
2024-12-04 23:12:05,764 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=67.4 pTM=0.466 ipTM=0.213 tol=2.13
2024-12-04 23:12:14,164 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=67.3 pTM=0.455 ipTM=0.176 tol=1.92
2024-12-04 23:12:22,557 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=67.4 pTM=0.464 ipTM=0.203 tol=1.52
2024-12-04 23:12:30,959 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=67.2 pTM=0.456 ipTM=0.178 tol=1.82
2024-12-04 23:12:39,358 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=67.8 pTM=0.47 ipTM=0.22 tol=2.82
2024-12-04 23:12:47,756 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=67.5 pTM=0.454 ipTM=0.182 tol=2.21
2024-12-04 23:12:56,155 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=67.6 pTM=0.46 ipTM=0.193 tol=2.07
2024-12-04 23:13:04,552 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=67.2 pTM=0.455 ipTM=0.176 tol=2.99
2024-12-04 23:13:04,553 alphafold2_multimer_v3_model_1_seed_000 took 366.3s (30 recycles)
2024-12-04 23:13:13,297 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=68.1 pTM=0.466 ipTM=0.171
2024-12-04 23:13:21,727 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=69 pTM=0.459 ipTM=0.162 tol=10.9
2024-12-04 23:13:30,146 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=69.8 pTM=0.45 ipTM=0.147 tol=10.8
2024-12-04 23:13:38,546 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=67.9 pTM=0.454 ipTM=0.158 tol=8.52
2024-12-04 23:13:46,945 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=68.1 pTM=0.456 ipTM=0.161 tol=7.7
2024-12-04 23:13:55,334 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.6 pTM=0.454 ipTM=0.161 tol=4.56
2024-12-04 23:14:03,720 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67.4 pTM=0.453 ipTM=0.162 tol=5.31
2024-12-04 23:14:12,097 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=66.4 pTM=0.453 ipTM=0.166 tol=5.44
2024-12-04 23:14:20,476 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=66.5 pTM=0.458 ipTM=0.179 tol=4.46
2024-12-04 23:14:28,861 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=66.4 pTM=0.459 ipTM=0.18 tol=3.73
2024-12-04 23:14:37,246 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=66.8 pTM=0.458 ipTM=0.181 tol=2.46
2024-12-04 23:14:45,626 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=66.3 pTM=0.465 ipTM=0.185 tol=7.5
2024-12-04 23:14:54,015 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=66.6 pTM=0.457 ipTM=0.177 tol=5.86
2024-12-04 23:15:02,399 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=66.5 pTM=0.457 ipTM=0.184 tol=3.12
2024-12-04 23:15:10,786 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=66.4 pTM=0.461 ipTM=0.187 tol=3.81
2024-12-04 23:15:19,175 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=66.5 pTM=0.455 ipTM=0.177 tol=5.2
2024-12-04 23:15:27,564 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=66.4 pTM=0.455 ipTM=0.181 tol=3.84
2024-12-04 23:15:35,949 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=66.4 pTM=0.465 ipTM=0.191 tol=4.11
2024-12-04 23:15:44,341 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=66.2 pTM=0.455 ipTM=0.179 tol=5.4
2024-12-04 23:15:52,726 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=66.1 pTM=0.453 ipTM=0.172 tol=3.76
2024-12-04 23:16:01,111 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=66.4 pTM=0.462 ipTM=0.18 tol=3.51
2024-12-04 23:16:09,503 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=66.3 pTM=0.454 ipTM=0.173 tol=3.51
2024-12-04 23:16:17,896 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=66.1 pTM=0.455 ipTM=0.174 tol=2.92
2024-12-04 23:16:26,280 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=65.8 pTM=0.458 ipTM=0.184 tol=3.5
2024-12-04 23:16:34,670 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=66.2 pTM=0.454 ipTM=0.183 tol=3.17
2024-12-04 23:16:43,057 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=66.5 pTM=0.453 ipTM=0.177 tol=2.61
2024-12-04 23:16:51,461 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=65.7 pTM=0.456 ipTM=0.177 tol=3.1
2024-12-04 23:16:59,849 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=66.1 pTM=0.456 ipTM=0.184 tol=2.17
2024-12-04 23:17:08,226 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=66.3 pTM=0.458 ipTM=0.187 tol=3.85
2024-12-04 23:17:16,602 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=66.1 pTM=0.468 ipTM=0.198 tol=5.45
2024-12-04 23:17:24,992 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=66.3 pTM=0.457 ipTM=0.186 tol=5.43
2024-12-04 23:17:24,992 alphafold2_multimer_v3_model_2_seed_000 took 260.1s (30 recycles)
2024-12-04 23:17:33,699 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.6 pTM=0.452 ipTM=0.19
2024-12-04 23:17:42,120 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=70.1 pTM=0.453 ipTM=0.285 tol=9.59
2024-12-04 23:17:50,503 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=68.7 pTM=0.46 ipTM=0.225 tol=5.25
2024-12-04 23:17:58,882 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=69 pTM=0.471 ipTM=0.253 tol=5
2024-12-04 23:18:07,260 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68.4 pTM=0.466 ipTM=0.236 tol=2.89
2024-12-04 23:18:15,631 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=68.6 pTM=0.476 ipTM=0.236 tol=1.33
2024-12-04 23:18:24,000 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=68.2 pTM=0.469 ipTM=0.262 tol=1.25
2024-12-04 23:18:32,379 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=68.4 pTM=0.481 ipTM=0.269 tol=1.43
2024-12-04 23:18:40,758 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=68.2 pTM=0.471 ipTM=0.238 tol=2.45
2024-12-04 23:18:49,138 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=68 pTM=0.476 ipTM=0.236 tol=4.51
2024-12-04 23:18:57,518 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=68 pTM=0.467 ipTM=0.295 tol=3.71
2024-12-04 23:19:05,892 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=68.1 pTM=0.478 ipTM=0.252 tol=3.6
2024-12-04 23:19:14,270 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.9 pTM=0.468 ipTM=0.236 tol=2.43
2024-12-04 23:19:22,641 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=68.1 pTM=0.481 ipTM=0.255 tol=1.6
2024-12-04 23:19:31,013 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=68.1 pTM=0.472 ipTM=0.279 tol=2.1
2024-12-04 23:19:39,390 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=68.1 pTM=0.482 ipTM=0.271 tol=2.15
2024-12-04 23:19:47,758 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=67.9 pTM=0.47 ipTM=0.287 tol=2.44
2024-12-04 23:19:56,141 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=68.2 pTM=0.486 ipTM=0.277 tol=2.15
2024-12-04 23:20:04,519 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=68 pTM=0.472 ipTM=0.272 tol=1.54
2024-12-04 23:20:12,894 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=68 pTM=0.481 ipTM=0.26 tol=2.73
2024-12-04 23:20:21,277 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=68.1 pTM=0.472 ipTM=0.272 tol=1.56
2024-12-04 23:20:29,663 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=68.1 pTM=0.483 ipTM=0.258 tol=1.75
2024-12-04 23:20:38,042 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=68.2 pTM=0.476 ipTM=0.3 tol=2.63
2024-12-04 23:20:46,424 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=68 pTM=0.478 ipTM=0.273 tol=1.89
2024-12-04 23:20:54,816 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=68.1 pTM=0.472 ipTM=0.29 tol=3.43
2024-12-04 23:21:03,202 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67.9 pTM=0.475 ipTM=0.277 tol=2.32
2024-12-04 23:21:11,588 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67.8 pTM=0.465 ipTM=0.27 tol=3.45
2024-12-04 23:21:19,975 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=68 pTM=0.485 ipTM=0.261 tol=2.31
2024-12-04 23:21:28,359 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=68 pTM=0.472 ipTM=0.274 tol=3.2
2024-12-04 23:21:36,744 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=68.2 pTM=0.487 ipTM=0.265 tol=2.13
2024-12-04 23:21:45,130 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=67.8 pTM=0.475 ipTM=0.242 tol=1.27
2024-12-04 23:21:45,130 alphafold2_multimer_v3_model_3_seed_000 took 259.8s (30 recycles)
2024-12-04 23:21:53,853 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.4 pTM=0.475 ipTM=0.19
2024-12-04 23:22:02,317 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=67.3 pTM=0.465 ipTM=0.164 tol=6.79
2024-12-04 23:22:10,751 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=68 pTM=0.466 ipTM=0.168 tol=6.21
2024-12-04 23:22:19,185 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66.9 pTM=0.458 ipTM=0.16 tol=6.74
2024-12-04 23:22:27,624 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=66.8 pTM=0.458 ipTM=0.16 tol=2.92
2024-12-04 23:22:36,060 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=66.8 pTM=0.459 ipTM=0.16 tol=1.8
2024-12-04 23:22:44,490 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=67.1 pTM=0.459 ipTM=0.161 tol=2.57
2024-12-04 23:22:52,918 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=66.8 pTM=0.457 ipTM=0.158 tol=2.66
2024-12-04 23:23:01,352 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=66.7 pTM=0.456 ipTM=0.158 tol=4
2024-12-04 23:23:09,791 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=66.6 pTM=0.458 ipTM=0.16 tol=4.48
2024-12-04 23:23:18,223 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=66.4 pTM=0.455 ipTM=0.16 tol=3.83
2024-12-04 23:23:26,647 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=66.4 pTM=0.455 ipTM=0.159 tol=3.26
2024-12-04 23:23:35,069 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=66.2 pTM=0.457 ipTM=0.162 tol=4.06
2024-12-04 23:23:43,500 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=66.2 pTM=0.455 ipTM=0.161 tol=4.35
2024-12-04 23:23:51,929 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=66.5 pTM=0.453 ipTM=0.159 tol=8.34
2024-12-04 23:24:00,351 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=66.1 pTM=0.476 ipTM=0.261 tol=10.5
2024-12-04 23:24:08,786 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=66.7 pTM=0.454 ipTM=0.16 tol=7.72
2024-12-04 23:24:17,221 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=67.8 pTM=0.454 ipTM=0.154 tol=7.88
2024-12-04 23:24:25,647 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=65.9 pTM=0.457 ipTM=0.165 tol=4.96
2024-12-04 23:24:34,090 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.9 pTM=0.459 ipTM=0.161 tol=7.91
2024-12-04 23:24:42,514 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=65.6 pTM=0.46 ipTM=0.168 tol=11.3
2024-12-04 23:24:50,950 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=65.8 pTM=0.454 ipTM=0.157 tol=10.3
2024-12-04 23:24:59,373 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=65.9 pTM=0.468 ipTM=0.213 tol=9.9
2024-12-04 23:25:07,812 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=66.4 pTM=0.455 ipTM=0.159 tol=9.02
2024-12-04 23:25:16,241 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=66.2 pTM=0.464 ipTM=0.172 tol=8.2
2024-12-04 23:25:24,670 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=66.1 pTM=0.458 ipTM=0.165 tol=5.79
2024-12-04 23:25:33,090 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=65.7 pTM=0.464 ipTM=0.181 tol=4.11
2024-12-04 23:25:41,502 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=66.1 pTM=0.46 ipTM=0.168 tol=6.87
2024-12-04 23:25:49,919 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=65.8 pTM=0.463 ipTM=0.173 tol=8.91
2024-12-04 23:25:58,346 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=65.8 pTM=0.459 ipTM=0.165 tol=8.16
2024-12-04 23:26:06,762 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=65.8 pTM=0.461 ipTM=0.17 tol=5.71
2024-12-04 23:26:06,763 alphafold2_multimer_v3_model_4_seed_000 took 261.3s (30 recycles)
2024-12-04 23:26:15,482 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=67.8 pTM=0.464 ipTM=0.175
2024-12-04 23:26:23,941 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=69.2 pTM=0.451 ipTM=0.149 tol=10.6
2024-12-04 23:26:32,383 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68.6 pTM=0.456 ipTM=0.159 tol=6.72
2024-12-04 23:26:40,816 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=68.1 pTM=0.447 ipTM=0.149 tol=2.61
2024-12-04 23:26:49,233 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=67.8 pTM=0.457 ipTM=0.406 tol=9.03
2024-12-04 23:26:57,657 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=68.1 pTM=0.457 ipTM=0.367 tol=5.95
2024-12-04 23:27:06,062 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=67.7 pTM=0.459 ipTM=0.304 tol=2.56
2024-12-04 23:27:14,483 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=67.8 pTM=0.453 ipTM=0.243 tol=3.81
2024-12-04 23:27:22,891 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=67.2 pTM=0.452 ipTM=0.256 tol=2.67
2024-12-04 23:27:31,312 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=67.8 pTM=0.471 ipTM=0.221 tol=4.09
2024-12-04 23:27:39,734 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=68 pTM=0.457 ipTM=0.325 tol=2.06
2024-12-04 23:27:48,143 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=67.4 pTM=0.466 ipTM=0.292 tol=2.23
2024-12-04 23:27:56,552 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=67.1 pTM=0.46 ipTM=0.238 tol=2.59
2024-12-04 23:28:04,960 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=67.4 pTM=0.462 ipTM=0.184 tol=2.37
2024-12-04 23:28:13,372 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=66.9 pTM=0.461 ipTM=0.2 tol=1.86
2024-12-04 23:28:21,797 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=67.6 pTM=0.462 ipTM=0.236 tol=3.41
2024-12-04 23:28:30,211 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=67.4 pTM=0.457 ipTM=0.251 tol=3.71
2024-12-04 23:28:38,626 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=67.4 pTM=0.458 ipTM=0.296 tol=4.07
2024-12-04 23:28:47,036 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=66.9 pTM=0.459 ipTM=0.238 tol=1.64
2024-12-04 23:28:55,462 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=67.7 pTM=0.46 ipTM=0.236 tol=1.97
2024-12-04 23:29:03,875 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=67.6 pTM=0.459 ipTM=0.243 tol=2.88
2024-12-04 23:29:12,295 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=67.6 pTM=0.457 ipTM=0.348 tol=3.02
2024-12-04 23:29:20,696 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=67.1 pTM=0.463 ipTM=0.238 tol=3.2
2024-12-04 23:29:29,117 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=67.3 pTM=0.466 ipTM=0.215 tol=2.8
2024-12-04 23:29:37,543 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=67.3 pTM=0.448 ipTM=0.167 tol=3.28
2024-12-04 23:29:45,964 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=67.1 pTM=0.45 ipTM=0.167 tol=3.26
2024-12-04 23:29:54,389 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=67.8 pTM=0.46 ipTM=0.352 tol=3.7
2024-12-04 23:30:02,810 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=68 pTM=0.46 ipTM=0.214 tol=2.71
2024-12-04 23:30:11,220 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=66.9 pTM=0.454 ipTM=0.187 tol=4.16
2024-12-04 23:30:19,660 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=67.3 pTM=0.449 ipTM=0.158 tol=2.47
2024-12-04 23:30:28,084 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=67.8 pTM=0.46 ipTM=0.257 tol=2.93
2024-12-04 23:30:28,084 alphafold2_multimer_v3_model_5_seed_000 took 261.0s (30 recycles)
2024-12-04 23:30:28,375 reranking models by 'multimer' metric
2024-12-04 23:30:32,943 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-04 23:31:13,961 Relaxation took 45.6s
2024-12-04 23:31:13,961 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=67.8 pTM=0.46 ipTM=0.257
2024-12-04 23:31:49,879 Relaxation took 35.9s
2024-12-04 23:31:49,879 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=67.8 pTM=0.475 ipTM=0.242
2024-12-04 23:32:25,839 Relaxation took 36.0s
2024-12-04 23:32:25,839 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=66.3 pTM=0.457 ipTM=0.186
2024-12-04 23:33:02,376 Relaxation took 36.5s
2024-12-04 23:33:02,376 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=67.2 pTM=0.455 ipTM=0.176
2024-12-04 23:33:40,530 Relaxation took 38.2s
2024-12-04 23:33:40,531 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=65.8 pTM=0.461 ipTM=0.17
2024-12-04 23:33:41,868 Done