2024-12-05 01:10:17,389 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 01:10:17,700 Running on GPU
2024-12-05 01:10:21,874 Found 6 citations for tools or databases
2024-12-05 01:10:21,874 Query 1/1: BRCA1_CDKN3 (length 2168)
2024-12-05 01:10:22,178 Sleeping for 10s. Reason: PENDING
2024-12-05 01:10:32,434 Sleeping for 6s. Reason: RUNNING
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2024-12-05 01:14:07,199 Sleeping for 5s. Reason: RUNNING
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2024-12-05 01:14:18,712 Sleeping for 5s. Reason: RUNNING
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2024-12-05 01:14:30,241 Sleeping for 6s. Reason: RUNNING
2024-12-05 01:14:36,498 Sleeping for 6s. Reason: RUNNING
2024-12-05 01:14:42,751 Sleeping for 9s. Reason: RUNNING
2024-12-05 01:14:52,012 Sleeping for 9s. Reason: RUNNING
2024-12-05 01:15:01,270 Sleeping for 9s. Reason: RUNNING
2024-12-05 01:15:14,537 Sleeping for 6s. Reason: PENDING
2024-12-05 01:15:20,788 Sleeping for 8s. Reason: RUNNING
2024-12-05 01:15:29,043 Sleeping for 7s. Reason: RUNNING
2024-12-05 01:15:36,300 Sleeping for 10s. Reason: RUNNING
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2024-12-05 01:16:02,084 Sleeping for 6s. Reason: RUNNING
2024-12-05 01:16:08,349 Sleeping for 6s. Reason: RUNNING
2024-12-05 01:16:14,605 Sleeping for 7s. Reason: RUNNING
2024-12-05 01:16:21,858 Sleeping for 10s. Reason: RUNNING
2024-12-05 01:16:32,117 Sleeping for 10s. Reason: RUNNING
2024-12-05 01:16:42,377 Sleeping for 10s. Reason: RUNNING
2024-12-05 01:16:52,640 Sleeping for 6s. Reason: RUNNING
2024-12-05 01:16:58,901 Sleeping for 9s. Reason: RUNNING
2024-12-05 01:17:08,159 Sleeping for 9s. Reason: RUNNING
2024-12-05 01:17:17,424 Sleeping for 5s. Reason: RUNNING
2024-12-05 01:17:22,679 Sleeping for 7s. Reason: RUNNING
2024-12-05 01:17:29,931 Sleeping for 6s. Reason: RUNNING
2024-12-05 01:17:36,197 Sleeping for 8s. Reason: RUNNING
2024-12-05 01:17:44,454 Sleeping for 10s. Reason: RUNNING
2024-12-05 01:17:54,714 Sleeping for 7s. Reason: RUNNING
2024-12-05 01:18:01,969 Sleeping for 8s. Reason: RUNNING
2024-12-05 01:18:10,576 Sleeping for 10s. Reason: RUNNING
2024-12-05 01:18:27,931 Setting max_seq=508, max_extra_seq=2048
2024-12-05 01:23:45,893 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=33 pTM=0.309 ipTM=0.432
2024-12-05 01:26:59,989 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=32.6 pTM=0.303 ipTM=0.329 tol=20.4
2024-12-05 01:30:14,074 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=32.7 pTM=0.3 ipTM=0.32 tol=19.3
2024-12-05 01:33:28,247 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=32.6 pTM=0.301 ipTM=0.297 tol=15.9
2024-12-05 01:36:42,452 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=33.3 pTM=0.302 ipTM=0.322 tol=17.7
2024-12-05 01:39:56,646 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=33.2 pTM=0.3 ipTM=0.3 tol=16.1
2024-12-05 01:43:10,872 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=33.3 pTM=0.3 ipTM=0.309 tol=10.6
2024-12-05 01:46:25,115 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=33.1 pTM=0.3 ipTM=0.298 tol=17.1
2024-12-05 01:49:39,337 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=33.3 pTM=0.301 ipTM=0.309 tol=15.6
2024-12-05 01:52:53,563 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=33.5 pTM=0.302 ipTM=0.325 tol=14.1
2024-12-05 01:56:07,746 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=33.3 pTM=0.302 ipTM=0.357 tol=17.1
2024-12-05 01:59:21,968 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=33.3 pTM=0.305 ipTM=0.419 tol=14.4
2024-12-05 02:02:36,217 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=33 pTM=0.3 ipTM=0.315 tol=22.8
2024-12-05 02:05:50,524 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=33.5 pTM=0.302 ipTM=0.319 tol=19.7
2024-12-05 02:09:04,746 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=33.4 pTM=0.303 ipTM=0.358 tol=17.9
2024-12-05 02:12:19,005 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=33.7 pTM=0.303 ipTM=0.36 tol=21.1
2024-12-05 02:15:33,188 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=33.4 pTM=0.302 ipTM=0.34 tol=17.7
2024-12-05 02:18:47,443 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=33.6 pTM=0.302 ipTM=0.384 tol=16.8
2024-12-05 02:22:01,667 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=33.3 pTM=0.302 ipTM=0.336 tol=10.9
2024-12-05 02:25:15,867 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=33.6 pTM=0.302 ipTM=0.331 tol=12
2024-12-05 02:28:30,042 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=33.5 pTM=0.302 ipTM=0.318 tol=10.6
2024-12-05 02:31:44,215 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=33.7 pTM=0.305 ipTM=0.462 tol=9.22
2024-12-05 02:34:58,387 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=32.6 pTM=0.301 ipTM=0.314 tol=29.9
2024-12-05 02:38:12,704 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=33.4 pTM=0.302 ipTM=0.32 tol=21.8
2024-12-05 02:41:26,926 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=33.7 pTM=0.3 ipTM=0.349 tol=18.1
2024-12-05 02:44:41,160 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=33.7 pTM=0.304 ipTM=0.535 tol=11
2024-12-05 02:47:55,364 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=33.4 pTM=0.303 ipTM=0.328 tol=9.81
2024-12-05 02:51:09,566 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=33.6 pTM=0.302 ipTM=0.323 tol=12.6
2024-12-05 02:54:23,793 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=33.6 pTM=0.302 ipTM=0.324 tol=10.6
2024-12-05 02:57:37,978 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=33.4 pTM=0.303 ipTM=0.364 tol=21.8
2024-12-05 03:00:52,141 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=33.5 pTM=0.303 ipTM=0.381 tol=15.5
2024-12-05 03:00:52,143 alphafold2_multimer_v3_model_1_seed_000 took 6138.9s (30 recycles)
2024-12-05 03:04:08,519 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=33.4 pTM=0.307 ipTM=0.486
2024-12-05 03:07:22,536 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=34.3 pTM=0.303 ipTM=0.316 tol=27.4
2024-12-05 03:10:36,605 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=34.6 pTM=0.305 ipTM=0.338 tol=18.6
2024-12-05 03:13:50,634 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=34.7 pTM=0.304 ipTM=0.326 tol=12.7
2024-12-05 03:17:04,712 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=34.8 pTM=0.304 ipTM=0.35 tol=9.77
2024-12-05 03:20:18,900 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=34.7 pTM=0.304 ipTM=0.328 tol=7.57
2024-12-05 03:23:33,023 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=34.8 pTM=0.303 ipTM=0.343 tol=7.58
2024-12-05 03:26:47,156 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=34.8 pTM=0.304 ipTM=0.331 tol=6.68
2024-12-05 03:30:01,278 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=34.8 pTM=0.304 ipTM=0.327 tol=9.25
2024-12-05 03:33:15,402 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=34.8 pTM=0.304 ipTM=0.33 tol=12.4
2024-12-05 03:36:29,536 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=34.8 pTM=0.304 ipTM=0.328 tol=8.39
2024-12-05 03:39:43,688 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=34.8 pTM=0.303 ipTM=0.331 tol=7.02
2024-12-05 03:42:57,855 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=34.8 pTM=0.304 ipTM=0.361 tol=9.38
2024-12-05 03:46:11,977 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=34.6 pTM=0.304 ipTM=0.339 tol=8.47
2024-12-05 03:49:26,124 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=34.9 pTM=0.304 ipTM=0.349 tol=5.57
2024-12-05 03:52:40,207 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=34.8 pTM=0.305 ipTM=0.345 tol=7.17
2024-12-05 03:55:54,361 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=34.9 pTM=0.305 ipTM=0.351 tol=6.78
2024-12-05 03:59:08,535 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=34.8 pTM=0.305 ipTM=0.348 tol=6.63
2024-12-05 04:02:22,702 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=34.7 pTM=0.305 ipTM=0.343 tol=7.14
2024-12-05 04:05:36,856 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=34.8 pTM=0.305 ipTM=0.346 tol=5.84
2024-12-05 04:08:50,981 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=35 pTM=0.305 ipTM=0.373 tol=5.19
2024-12-05 04:12:05,133 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=35 pTM=0.306 ipTM=0.445 tol=6.05
2024-12-05 04:15:19,293 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=34.9 pTM=0.306 ipTM=0.376 tol=5.94
2024-12-05 04:18:33,434 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=34.7 pTM=0.305 ipTM=0.354 tol=5.11
2024-12-05 04:21:47,621 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=34.8 pTM=0.305 ipTM=0.35 tol=6.98
2024-12-05 04:25:01,816 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=34.8 pTM=0.305 ipTM=0.394 tol=6.95
2024-12-05 04:28:15,977 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=34.7 pTM=0.305 ipTM=0.348 tol=5.44
2024-12-05 04:31:30,078 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=34.8 pTM=0.304 ipTM=0.351 tol=6.4
2024-12-05 04:34:44,199 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=34.9 pTM=0.304 ipTM=0.327 tol=7.15
2024-12-05 04:37:58,331 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=34.7 pTM=0.304 ipTM=0.33 tol=6.36
2024-12-05 04:41:12,465 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=34.9 pTM=0.306 ipTM=0.438 tol=6.47
2024-12-05 04:41:12,468 alphafold2_multimer_v3_model_2_seed_000 took 6017.6s (30 recycles)
2024-12-05 04:44:29,615 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=33.2 pTM=0.309 ipTM=0.369
2024-12-05 04:47:44,388 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=33.5 pTM=0.306 ipTM=0.41 tol=28.4
2024-12-05 04:50:59,424 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=33.5 pTM=0.299 ipTM=0.285 tol=22.6
2024-12-05 04:54:14,650 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=34.1 pTM=0.301 ipTM=0.318 tol=17.3
2024-12-05 04:57:29,888 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=34.3 pTM=0.301 ipTM=0.302 tol=12.7
2024-12-05 05:00:45,182 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=34.1 pTM=0.303 ipTM=0.364 tol=12.5
2024-12-05 05:04:00,451 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=33.9 pTM=0.303 ipTM=0.362 tol=11.1
2024-12-05 05:07:15,800 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=34.3 pTM=0.305 ipTM=0.437 tol=9.42
2024-12-05 05:10:31,101 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=33.9 pTM=0.303 ipTM=0.378 tol=13.4
2024-12-05 05:13:46,396 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=34.4 pTM=0.303 ipTM=0.392 tol=11.3
2024-12-05 05:17:01,694 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=34.5 pTM=0.307 ipTM=0.499 tol=11.4
2024-12-05 05:20:16,968 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=34.1 pTM=0.304 ipTM=0.44 tol=9.46
2024-12-05 05:23:32,279 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=34.3 pTM=0.305 ipTM=0.42 tol=9.27
2024-12-05 05:26:47,576 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=34.1 pTM=0.303 ipTM=0.434 tol=9.62
2024-12-05 05:30:02,848 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=34.3 pTM=0.306 ipTM=0.425 tol=9.17
2024-12-05 05:33:18,089 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=34.4 pTM=0.304 ipTM=0.5 tol=7.11
2024-12-05 05:36:33,371 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=34.1 pTM=0.307 ipTM=0.469 tol=8.66
2024-12-05 05:39:48,718 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=34.4 pTM=0.303 ipTM=0.427 tol=8.75
2024-12-05 05:43:04,033 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=34.4 pTM=0.308 ipTM=0.502 tol=9.38
2024-12-05 05:46:19,377 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=34.4 pTM=0.303 ipTM=0.406 tol=7.13
2024-12-05 05:49:34,660 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=34.7 pTM=0.309 ipTM=0.454 tol=8.16
2024-12-05 05:52:49,965 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=34.7 pTM=0.308 ipTM=0.518 tol=7.82
2024-12-05 05:56:05,251 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=34.3 pTM=0.309 ipTM=0.494 tol=8.24
2024-12-05 05:59:20,533 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=34.4 pTM=0.307 ipTM=0.491 tol=6.55
2024-12-05 06:02:35,823 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=34.5 pTM=0.31 ipTM=0.495 tol=7.38
2024-12-05 06:05:51,101 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=34.5 pTM=0.308 ipTM=0.491 tol=8.45
2024-12-05 06:09:06,368 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=34.4 pTM=0.309 ipTM=0.469 tol=7.53
2024-12-05 06:12:21,646 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=34.3 pTM=0.306 ipTM=0.411 tol=7.4
2024-12-05 06:15:36,899 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=34.3 pTM=0.309 ipTM=0.421 tol=7.51
2024-12-05 06:18:52,055 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=34.4 pTM=0.308 ipTM=0.504 tol=6.3
2024-12-05 06:22:07,240 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=34.4 pTM=0.308 ipTM=0.426 tol=6.24
2024-12-05 06:22:07,242 alphafold2_multimer_v3_model_3_seed_000 took 6052.0s (30 recycles)
2024-12-05 06:25:24,552 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=32.6 pTM=0.298 ipTM=0.294
2024-12-05 06:28:39,927 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=32.7 pTM=0.293 ipTM=0.334 tol=26.6
2024-12-05 06:31:55,288 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=32.7 pTM=0.295 ipTM=0.345 tol=24.5
2024-12-05 06:35:10,760 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=32.8 pTM=0.296 ipTM=0.312 tol=25.2
2024-12-05 06:38:26,383 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=32.8 pTM=0.299 ipTM=0.432 tol=17.9
2024-12-05 06:41:42,062 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=32.5 pTM=0.297 ipTM=0.297 tol=12.7
2024-12-05 06:44:57,748 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=32.7 pTM=0.296 ipTM=0.3 tol=12.3
2024-12-05 06:48:13,404 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=32.5 pTM=0.297 ipTM=0.347 tol=17.8
2024-12-05 06:51:29,083 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=32.6 pTM=0.297 ipTM=0.305 tol=14.5
2024-12-05 06:54:44,780 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=32.7 pTM=0.297 ipTM=0.306 tol=13.1
2024-12-05 06:58:00,536 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=32.7 pTM=0.296 ipTM=0.308 tol=12.9
2024-12-05 07:01:16,182 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=32.6 pTM=0.297 ipTM=0.304 tol=12.2
2024-12-05 07:04:31,803 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=32.7 pTM=0.297 ipTM=0.313 tol=19.2
2024-12-05 07:07:47,256 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=32.6 pTM=0.296 ipTM=0.297 tol=18.7
2024-12-05 07:11:02,856 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=32.8 pTM=0.297 ipTM=0.325 tol=17
2024-12-05 07:14:18,335 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=32.7 pTM=0.297 ipTM=0.3 tol=16.6
2024-12-05 07:17:33,841 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=32.7 pTM=0.297 ipTM=0.311 tol=17.8
2024-12-05 07:20:49,312 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=32.8 pTM=0.296 ipTM=0.298 tol=18.6
2024-12-05 07:24:04,820 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=32.6 pTM=0.299 ipTM=0.4 tol=16
2024-12-05 07:27:20,473 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=32.7 pTM=0.296 ipTM=0.31 tol=17.7
2024-12-05 07:30:35,968 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=33 pTM=0.299 ipTM=0.374 tol=17.4
2024-12-05 07:33:51,512 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=32.9 pTM=0.299 ipTM=0.323 tol=14.2
2024-12-05 07:37:07,075 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=32.8 pTM=0.302 ipTM=0.432 tol=12.7
2024-12-05 07:40:22,692 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=32.7 pTM=0.306 ipTM=0.378 tol=12.1
2024-12-05 07:43:38,372 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=32.9 pTM=0.297 ipTM=0.302 tol=12.8
2024-12-05 07:46:54,032 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=32.7 pTM=0.303 ipTM=0.429 tol=13.3
2024-12-05 07:50:09,615 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=32.5 pTM=0.303 ipTM=0.37 tol=15.8
2024-12-05 07:53:25,191 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=32.6 pTM=0.304 ipTM=0.363 tol=15.2
2024-12-05 07:56:40,748 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=32.6 pTM=0.302 ipTM=0.385 tol=12.3
2024-12-05 07:59:56,433 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=32.6 pTM=0.302 ipTM=0.347 tol=13.1
2024-12-05 08:03:12,158 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=32.7 pTM=0.3 ipTM=0.325 tol=11.4
2024-12-05 08:03:12,161 alphafold2_multimer_v3_model_4_seed_000 took 6062.2s (30 recycles)
2024-12-05 08:06:30,390 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=32.7 pTM=0.297 ipTM=0.3
2024-12-05 08:09:46,266 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=34.2 pTM=0.293 ipTM=0.256 tol=22.1
2024-12-05 08:13:02,240 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=34.2 pTM=0.294 ipTM=0.257 tol=19.5
2024-12-05 08:16:18,295 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=34.5 pTM=0.294 ipTM=0.253 tol=14.2
2024-12-05 08:19:34,440 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=34.5 pTM=0.293 ipTM=0.248 tol=13.1
2024-12-05 08:22:50,551 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=34.4 pTM=0.292 ipTM=0.246 tol=23.2
2024-12-05 08:26:06,696 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=34.4 pTM=0.292 ipTM=0.249 tol=15.2
2024-12-05 08:29:22,837 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=34.6 pTM=0.292 ipTM=0.249 tol=15
2024-12-05 08:32:38,984 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=34.4 pTM=0.292 ipTM=0.251 tol=25.8
2024-12-05 08:35:55,228 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=34.5 pTM=0.292 ipTM=0.25 tol=17.4
2024-12-05 08:39:11,376 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=34.5 pTM=0.292 ipTM=0.246 tol=16
2024-12-05 08:42:27,521 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=34.6 pTM=0.293 ipTM=0.318 tol=15.8
2024-12-05 08:45:43,619 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=34.5 pTM=0.294 ipTM=0.298 tol=12.4
2024-12-05 08:48:59,703 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=34.4 pTM=0.293 ipTM=0.308 tol=27
2024-12-05 08:52:15,909 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=34.4 pTM=0.293 ipTM=0.285 tol=25
2024-12-05 08:55:32,097 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=34.4 pTM=0.292 ipTM=0.265 tol=16.6
2024-12-05 08:58:48,243 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=34.3 pTM=0.292 ipTM=0.277 tol=24
2024-12-05 09:02:04,510 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=34.3 pTM=0.293 ipTM=0.285 tol=23.3
2024-12-05 09:05:20,747 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=34.4 pTM=0.292 ipTM=0.261 tol=17.8
2024-12-05 09:08:36,997 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=34.5 pTM=0.292 ipTM=0.286 tol=16
2024-12-05 09:11:53,144 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=34.5 pTM=0.293 ipTM=0.266 tol=12.8
2024-12-05 09:15:09,313 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=34.5 pTM=0.293 ipTM=0.291 tol=12.8
2024-12-05 09:18:25,514 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=34.5 pTM=0.293 ipTM=0.293 tol=13.9
2024-12-05 09:21:41,678 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=34.3 pTM=0.293 ipTM=0.284 tol=13.2
2024-12-05 09:24:57,889 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=34.6 pTM=0.293 ipTM=0.29 tol=12.9
2024-12-05 09:28:14,094 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=34.4 pTM=0.293 ipTM=0.269 tol=25.8
2024-12-05 09:31:30,256 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=34.4 pTM=0.293 ipTM=0.28 tol=23
2024-12-05 09:34:46,404 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=34.3 pTM=0.293 ipTM=0.269 tol=13.3
2024-12-05 09:38:02,536 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=34.5 pTM=0.293 ipTM=0.27 tol=14.6
2024-12-05 09:41:18,676 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=34.4 pTM=0.293 ipTM=0.267 tol=14.2
2024-12-05 09:44:34,863 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=34.4 pTM=0.292 ipTM=0.274 tol=25.1
2024-12-05 09:44:34,865 alphafold2_multimer_v3_model_5_seed_000 took 6080.0s (30 recycles)
2024-12-05 09:44:37,601 reranking models by 'multimer' metric
2024-12-05 09:44:42,772 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 10:43:44,871 Relaxation took 3547.3s
2024-12-05 10:43:44,871 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=34.9 pTM=0.306 ipTM=0.438
2024-12-05 10:50:56,352 Relaxation took 431.5s
2024-12-05 10:50:56,352 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=34.4 pTM=0.308 ipTM=0.426
2024-12-05 10:58:10,015 Relaxation took 433.7s
2024-12-05 10:58:10,015 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=33.5 pTM=0.303 ipTM=0.381
2024-12-05 11:07:48,750 Relaxation took 578.7s
2024-12-05 11:07:48,750 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=32.7 pTM=0.3 ipTM=0.325
2024-12-05 11:15:30,534 Relaxation took 461.8s
2024-12-05 11:15:30,534 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=34.4 pTM=0.292 ipTM=0.274
2024-12-05 11:15:36,594 Done