2024-12-05 05:33:53,695 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 05:33:54,008 Running on GPU
2024-12-05 05:33:55,464 Found 6 citations for tools or databases
2024-12-05 05:33:55,464 Query 1/1: CDC16_DUS3L (length 1270)
2024-12-05 05:33:55,730 Sleeping for 8s. Reason: PENDING
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2024-12-05 05:37:10,790 Sleeping for 6s. Reason: PENDING
2024-12-05 05:37:17,053 Sleeping for 8s. Reason: PENDING
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2024-12-05 05:37:34,565 Sleeping for 5s. Reason: PENDING
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2024-12-05 05:38:23,374 Sleeping for 5s. Reason: PENDING
2024-12-05 05:38:28,628 Sleeping for 9s. Reason: PENDING
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2024-12-05 05:39:46,222 Sleeping for 10s. Reason: PENDING
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2024-12-05 05:40:05,736 Sleeping for 9s. Reason: PENDING
2024-12-05 05:40:14,999 Sleeping for 6s. Reason: PENDING
2024-12-05 05:40:21,251 Sleeping for 8s. Reason: PENDING
2024-12-05 05:40:29,512 Sleeping for 7s. Reason: PENDING
2024-12-05 05:40:36,766 Sleeping for 7s. Reason: PENDING
2024-12-05 05:40:44,024 Sleeping for 8s. Reason: PENDING
2024-12-05 05:40:52,282 Sleeping for 9s. Reason: PENDING
2024-12-05 05:41:01,537 Sleeping for 5s. Reason: PENDING
2024-12-05 05:41:06,796 Sleeping for 6s. Reason: PENDING
2024-12-05 05:41:13,053 Sleeping for 10s. Reason: PENDING
2024-12-05 05:41:23,312 Sleeping for 10s. Reason: PENDING
2024-12-05 05:41:33,575 Sleeping for 7s. Reason: RUNNING
2024-12-05 05:41:40,831 Sleeping for 6s. Reason: RUNNING
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2024-12-05 05:42:30,382 Sleeping for 5s. Reason: RUNNING
2024-12-05 05:42:35,635 Sleeping for 6s. Reason: RUNNING
2024-12-05 05:42:41,891 Sleeping for 8s. Reason: RUNNING
2024-12-05 05:42:50,145 Sleeping for 7s. Reason: RUNNING
2024-12-05 05:42:57,405 Sleeping for 10s. Reason: RUNNING
2024-12-05 05:43:07,661 Sleeping for 6s. Reason: RUNNING
2024-12-05 05:43:13,920 Sleeping for 8s. Reason: RUNNING
2024-12-05 05:43:22,179 Sleeping for 9s. Reason: RUNNING
2024-12-05 05:43:31,444 Sleeping for 5s. Reason: RUNNING
2024-12-05 05:43:36,702 Sleeping for 10s. Reason: RUNNING
2024-12-05 05:43:51,526 Setting max_seq=508, max_extra_seq=2048
2024-12-05 05:46:56,933 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73 pTM=0.486 ipTM=0.173
2024-12-05 05:47:37,044 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=73.7 pTM=0.478 ipTM=0.157 tol=6.73
2024-12-05 05:48:17,381 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.4 pTM=0.476 ipTM=0.172 tol=5.76
2024-12-05 05:48:57,797 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.8 pTM=0.482 ipTM=0.162 tol=6.55
2024-12-05 05:49:38,269 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.8 pTM=0.482 ipTM=0.161 tol=2.58
2024-12-05 05:50:18,787 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=74.1 pTM=0.483 ipTM=0.164 tol=4.29
2024-12-05 05:50:59,313 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=73.9 pTM=0.485 ipTM=0.162 tol=3.56
2024-12-05 05:51:39,852 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=73.8 pTM=0.487 ipTM=0.166 tol=2.61
2024-12-05 05:52:20,328 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=73.9 pTM=0.487 ipTM=0.167 tol=1.98
2024-12-05 05:53:00,768 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=74 pTM=0.488 ipTM=0.167 tol=1.62
2024-12-05 05:53:41,222 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=73.8 pTM=0.489 ipTM=0.171 tol=1.34
2024-12-05 05:54:21,702 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=73.8 pTM=0.487 ipTM=0.163 tol=3.55
2024-12-05 05:55:02,195 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=74.1 pTM=0.487 ipTM=0.164 tol=1.29
2024-12-05 05:55:42,704 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=74.1 pTM=0.486 ipTM=0.161 tol=3.65
2024-12-05 05:56:23,240 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=74 pTM=0.487 ipTM=0.161 tol=5.43
2024-12-05 05:57:03,760 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=74.1 pTM=0.489 ipTM=0.175 tol=2.52
2024-12-05 05:57:44,296 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=74.2 pTM=0.491 ipTM=0.186 tol=1.92
2024-12-05 05:58:24,836 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=74.2 pTM=0.494 ipTM=0.191 tol=2.74
2024-12-05 05:59:05,385 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=74 pTM=0.495 ipTM=0.194 tol=2.47
2024-12-05 05:59:45,950 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=74.2 pTM=0.493 ipTM=0.19 tol=1.48
2024-12-05 06:00:26,487 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=74.2 pTM=0.496 ipTM=0.188 tol=2.63
2024-12-05 06:01:07,023 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=74.1 pTM=0.494 ipTM=0.181 tol=2.22
2024-12-05 06:01:47,521 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=74.1 pTM=0.494 ipTM=0.182 tol=2.83
2024-12-05 06:02:28,040 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=74.2 pTM=0.492 ipTM=0.174 tol=2.26
2024-12-05 06:03:08,552 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=74.2 pTM=0.494 ipTM=0.179 tol=0.965
2024-12-05 06:03:49,044 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=74.1 pTM=0.495 ipTM=0.184 tol=2.8
2024-12-05 06:04:29,533 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=74.2 pTM=0.499 ipTM=0.189 tol=1.38
2024-12-05 06:05:10,015 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=74.1 pTM=0.495 ipTM=0.183 tol=1.55
2024-12-05 06:05:50,507 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=74 pTM=0.496 ipTM=0.181 tol=1.98
2024-12-05 06:06:31,014 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=74.2 pTM=0.493 ipTM=0.174 tol=1.83
2024-12-05 06:07:11,518 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=74.2 pTM=0.496 ipTM=0.184 tol=2.31
2024-12-05 06:07:11,519 alphafold2_multimer_v3_model_1_seed_000 took 1396.4s (30 recycles)
2024-12-05 06:07:53,112 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.6 pTM=0.489 ipTM=0.178
2024-12-05 06:08:33,742 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.6 pTM=0.49 ipTM=0.169 tol=8.38
2024-12-05 06:09:14,415 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.4 pTM=0.483 ipTM=0.159 tol=4.5
2024-12-05 06:09:55,055 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74.6 pTM=0.488 ipTM=0.168 tol=1.93
2024-12-05 06:10:35,781 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.5 pTM=0.485 ipTM=0.164 tol=1.28
2024-12-05 06:11:16,473 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74.8 pTM=0.486 ipTM=0.165 tol=1.46
2024-12-05 06:11:57,221 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.8 pTM=0.488 ipTM=0.165 tol=0.866
2024-12-05 06:12:37,920 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.5 pTM=0.489 ipTM=0.168 tol=0.764
2024-12-05 06:13:18,605 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=74.8 pTM=0.489 ipTM=0.169 tol=0.816
2024-12-05 06:13:59,286 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=74.7 pTM=0.488 ipTM=0.167 tol=1.05
2024-12-05 06:14:39,977 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=74.4 pTM=0.49 ipTM=0.17 tol=1.03
2024-12-05 06:15:20,659 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=74.4 pTM=0.488 ipTM=0.167 tol=1.72
2024-12-05 06:16:01,369 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=74.6 pTM=0.489 ipTM=0.167 tol=1.17
2024-12-05 06:16:42,048 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=74.8 pTM=0.49 ipTM=0.17 tol=1.5
2024-12-05 06:17:22,744 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=74.5 pTM=0.49 ipTM=0.17 tol=0.881
2024-12-05 06:18:03,427 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=74.6 pTM=0.489 ipTM=0.168 tol=0.843
2024-12-05 06:18:44,123 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=74.6 pTM=0.49 ipTM=0.17 tol=0.886
2024-12-05 06:19:24,785 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=74.6 pTM=0.487 ipTM=0.167 tol=2.43
2024-12-05 06:20:05,423 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=74.2 pTM=0.486 ipTM=0.164 tol=2.35
2024-12-05 06:20:46,077 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=74.5 pTM=0.487 ipTM=0.166 tol=1.44
2024-12-05 06:21:26,726 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=74.6 pTM=0.487 ipTM=0.167 tol=1.54
2024-12-05 06:22:07,385 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=74.4 pTM=0.484 ipTM=0.164 tol=1.56
2024-12-05 06:22:48,057 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=74.5 pTM=0.485 ipTM=0.165 tol=1.02
2024-12-05 06:23:28,718 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=74.6 pTM=0.487 ipTM=0.166 tol=1.76
2024-12-05 06:24:09,386 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=74.6 pTM=0.487 ipTM=0.168 tol=1.65
2024-12-05 06:24:50,041 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=74.4 pTM=0.486 ipTM=0.164 tol=0.896
2024-12-05 06:25:30,719 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=74.6 pTM=0.487 ipTM=0.166 tol=1.35
2024-12-05 06:26:11,372 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=74.5 pTM=0.484 ipTM=0.162 tol=1.57
2024-12-05 06:26:52,015 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=74.4 pTM=0.485 ipTM=0.165 tol=2.48
2024-12-05 06:27:32,698 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=74.7 pTM=0.487 ipTM=0.169 tol=1.67
2024-12-05 06:28:13,377 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=74.7 pTM=0.488 ipTM=0.171 tol=1.59
2024-12-05 06:28:13,379 alphafold2_multimer_v3_model_2_seed_000 took 1260.9s (30 recycles)
2024-12-05 06:28:55,013 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.9 pTM=0.476 ipTM=0.152
2024-12-05 06:29:35,696 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=72.9 pTM=0.473 ipTM=0.156 tol=7.09
2024-12-05 06:30:16,312 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.1 pTM=0.472 ipTM=0.15 tol=5.07
2024-12-05 06:30:56,901 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.1 pTM=0.476 ipTM=0.154 tol=3.28
2024-12-05 06:31:37,472 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73 pTM=0.474 ipTM=0.155 tol=3.7
2024-12-05 06:32:18,050 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=73.3 pTM=0.478 ipTM=0.16 tol=3.4
2024-12-05 06:32:58,682 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=73.1 pTM=0.475 ipTM=0.153 tol=3.45
2024-12-05 06:33:39,296 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=73.1 pTM=0.478 ipTM=0.16 tol=3.14
2024-12-05 06:34:19,914 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=73.4 pTM=0.478 ipTM=0.157 tol=2.11
2024-12-05 06:35:00,572 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=73.4 pTM=0.476 ipTM=0.153 tol=3.38
2024-12-05 06:35:41,206 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=73.2 pTM=0.478 ipTM=0.157 tol=2.89
2024-12-05 06:36:21,861 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=73.2 pTM=0.475 ipTM=0.152 tol=2.26
2024-12-05 06:37:02,487 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.3 pTM=0.477 ipTM=0.156 tol=2.18
2024-12-05 06:37:43,098 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=73.5 pTM=0.479 ipTM=0.16 tol=1.54
2024-12-05 06:38:23,742 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=73.4 pTM=0.477 ipTM=0.156 tol=1.8
2024-12-05 06:39:04,356 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=73.5 pTM=0.479 ipTM=0.16 tol=1.38
2024-12-05 06:39:44,957 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=73.1 pTM=0.477 ipTM=0.157 tol=2.51
2024-12-05 06:40:25,550 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.3 pTM=0.477 ipTM=0.155 tol=1.54
2024-12-05 06:41:06,135 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.3 pTM=0.476 ipTM=0.156 tol=2.67
2024-12-05 06:41:46,709 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=73.4 pTM=0.478 ipTM=0.156 tol=2.35
2024-12-05 06:42:27,227 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=73.2 pTM=0.476 ipTM=0.156 tol=1.08
2024-12-05 06:43:07,778 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=73.1 pTM=0.476 ipTM=0.157 tol=1.7
2024-12-05 06:43:48,366 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=73.2 pTM=0.475 ipTM=0.156 tol=3.76
2024-12-05 06:44:28,939 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=73.3 pTM=0.477 ipTM=0.156 tol=2.57
2024-12-05 06:45:09,533 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=73.4 pTM=0.474 ipTM=0.155 tol=3.23
2024-12-05 06:45:50,113 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=72.9 pTM=0.476 ipTM=0.156 tol=3.02
2024-12-05 06:46:30,733 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=73.2 pTM=0.478 ipTM=0.158 tol=1.99
2024-12-05 06:47:11,344 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=73.1 pTM=0.474 ipTM=0.153 tol=3.21
2024-12-05 06:47:51,961 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=73.2 pTM=0.477 ipTM=0.157 tol=2.52
2024-12-05 06:48:32,572 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=73.2 pTM=0.478 ipTM=0.159 tol=1.9
2024-12-05 06:49:13,189 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=73.3 pTM=0.477 ipTM=0.156 tol=2.17
2024-12-05 06:49:13,190 alphafold2_multimer_v3_model_3_seed_000 took 1258.8s (30 recycles)
2024-12-05 06:49:54,771 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.2 pTM=0.482 ipTM=0.168
2024-12-05 06:50:35,366 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=72.2 pTM=0.481 ipTM=0.177 tol=6.62
2024-12-05 06:51:15,983 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=72.7 pTM=0.478 ipTM=0.169 tol=2.56
2024-12-05 06:51:56,556 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.9 pTM=0.483 ipTM=0.174 tol=3.9
2024-12-05 06:52:37,089 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.9 pTM=0.48 ipTM=0.173 tol=1.49
2024-12-05 06:53:17,662 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=73.3 pTM=0.482 ipTM=0.173 tol=1.61
2024-12-05 06:53:58,226 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73.2 pTM=0.481 ipTM=0.173 tol=1.42
2024-12-05 06:54:38,761 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=73.1 pTM=0.482 ipTM=0.173 tol=2.21
2024-12-05 06:55:19,285 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=73.3 pTM=0.484 ipTM=0.179 tol=1.78
2024-12-05 06:55:59,786 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.1 pTM=0.482 ipTM=0.174 tol=1.77
2024-12-05 06:56:40,324 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=73.1 pTM=0.483 ipTM=0.179 tol=1.73
2024-12-05 06:57:20,874 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=73.1 pTM=0.482 ipTM=0.172 tol=1.88
2024-12-05 06:58:01,464 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=73.1 pTM=0.482 ipTM=0.178 tol=1.67
2024-12-05 06:58:42,063 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=73.2 pTM=0.483 ipTM=0.177 tol=1.76
2024-12-05 06:59:22,647 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.1 pTM=0.483 ipTM=0.179 tol=1.79
2024-12-05 07:00:03,237 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73 pTM=0.483 ipTM=0.177 tol=2.01
2024-12-05 07:00:43,842 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=73.2 pTM=0.484 ipTM=0.178 tol=1.13
2024-12-05 07:01:24,441 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=73.1 pTM=0.483 ipTM=0.181 tol=1.95
2024-12-05 07:02:05,049 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=72.9 pTM=0.483 ipTM=0.178 tol=2.86
2024-12-05 07:02:45,658 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=72.9 pTM=0.482 ipTM=0.176 tol=3.01
2024-12-05 07:03:26,254 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=72.9 pTM=0.481 ipTM=0.177 tol=2.89
2024-12-05 07:04:06,830 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=72.9 pTM=0.481 ipTM=0.177 tol=2.8
2024-12-05 07:04:47,434 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=72.9 pTM=0.483 ipTM=0.18 tol=3.69
2024-12-05 07:05:28,008 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73.1 pTM=0.483 ipTM=0.182 tol=5.27
2024-12-05 07:06:08,595 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=73 pTM=0.484 ipTM=0.182 tol=1.81
2024-12-05 07:06:49,201 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=73.1 pTM=0.482 ipTM=0.178 tol=2.45
2024-12-05 07:07:29,816 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=73.1 pTM=0.483 ipTM=0.179 tol=3.71
2024-12-05 07:08:10,397 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=73 pTM=0.481 ipTM=0.176 tol=3.23
2024-12-05 07:08:50,995 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=73 pTM=0.481 ipTM=0.173 tol=3.11
2024-12-05 07:09:31,614 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=73.2 pTM=0.481 ipTM=0.175 tol=2.71
2024-12-05 07:10:12,232 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=73.1 pTM=0.483 ipTM=0.177 tol=1.69
2024-12-05 07:10:12,233 alphafold2_multimer_v3_model_4_seed_000 took 1258.1s (30 recycles)
2024-12-05 07:10:53,707 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71.1 pTM=0.492 ipTM=0.204
2024-12-05 07:11:34,305 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=72.5 pTM=0.491 ipTM=0.186 tol=6.85
2024-12-05 07:12:14,933 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72.9 pTM=0.488 ipTM=0.18 tol=2.67
2024-12-05 07:12:55,549 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=73.4 pTM=0.49 ipTM=0.186 tol=2.28
2024-12-05 07:13:36,199 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=73.6 pTM=0.488 ipTM=0.184 tol=3.41
2024-12-05 07:14:16,826 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=74.1 pTM=0.49 ipTM=0.182 tol=1.93
2024-12-05 07:14:57,437 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=73.8 pTM=0.489 ipTM=0.181 tol=1.46
2024-12-05 07:15:38,083 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=73.6 pTM=0.49 ipTM=0.182 tol=1.65
2024-12-05 07:16:18,693 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=73.8 pTM=0.49 ipTM=0.184 tol=1.83
2024-12-05 07:16:59,299 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=73.8 pTM=0.488 ipTM=0.179 tol=0.93
2024-12-05 07:17:39,924 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=73.8 pTM=0.489 ipTM=0.181 tol=0.7
2024-12-05 07:18:20,549 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=73.8 pTM=0.488 ipTM=0.181 tol=1.04
2024-12-05 07:19:01,185 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=74 pTM=0.489 ipTM=0.18 tol=1.23
2024-12-05 07:19:41,850 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=74.1 pTM=0.49 ipTM=0.182 tol=0.841
2024-12-05 07:20:22,502 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=74 pTM=0.489 ipTM=0.183 tol=0.98
2024-12-05 07:21:03,126 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=74.1 pTM=0.49 ipTM=0.183 tol=0.893
2024-12-05 07:21:43,738 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=73.9 pTM=0.49 ipTM=0.183 tol=0.975
2024-12-05 07:22:24,370 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=74 pTM=0.491 ipTM=0.184 tol=0.803
2024-12-05 07:23:05,034 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=73.9 pTM=0.49 ipTM=0.185 tol=0.77
2024-12-05 07:23:45,699 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=73.9 pTM=0.491 ipTM=0.185 tol=1.01
2024-12-05 07:24:26,350 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=73.8 pTM=0.49 ipTM=0.184 tol=0.835
2024-12-05 07:25:07,006 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=73.8 pTM=0.489 ipTM=0.184 tol=0.86
2024-12-05 07:25:47,611 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=73.8 pTM=0.489 ipTM=0.183 tol=0.873
2024-12-05 07:26:28,208 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=74.2 pTM=0.491 ipTM=0.184 tol=0.694
2024-12-05 07:27:08,766 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=74 pTM=0.492 ipTM=0.187 tol=0.726
2024-12-05 07:27:49,379 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=73.9 pTM=0.49 ipTM=0.184 tol=1.17
2024-12-05 07:28:29,988 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=73.9 pTM=0.49 ipTM=0.183 tol=1.16
2024-12-05 07:29:10,629 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=73.9 pTM=0.488 ipTM=0.18 tol=0.589
2024-12-05 07:29:51,286 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=73.7 pTM=0.489 ipTM=0.183 tol=0.976
2024-12-05 07:30:31,957 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=73.8 pTM=0.488 ipTM=0.18 tol=1.27
2024-12-05 07:31:12,628 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=73.8 pTM=0.49 ipTM=0.183 tol=1.39
2024-12-05 07:31:12,629 alphafold2_multimer_v3_model_5_seed_000 took 1259.4s (30 recycles)
2024-12-05 07:31:13,595 reranking models by 'multimer' metric
2024-12-05 07:31:17,356 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 07:33:01,834 Relaxation took 108.2s
2024-12-05 07:33:01,834 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74.2 pTM=0.496 ipTM=0.184
2024-12-05 07:34:06,039 Relaxation took 64.2s
2024-12-05 07:34:06,039 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=73.8 pTM=0.49 ipTM=0.183
2024-12-05 07:35:42,629 Relaxation took 96.6s
2024-12-05 07:35:42,629 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=73.1 pTM=0.483 ipTM=0.177
2024-12-05 07:37:52,770 Relaxation took 130.1s
2024-12-05 07:37:52,771 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.7 pTM=0.488 ipTM=0.171
2024-12-05 07:39:27,617 Relaxation took 94.8s
2024-12-05 07:39:27,617 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.3 pTM=0.477 ipTM=0.156
2024-12-05 07:39:30,094 Done