2024-12-05 06:37:11,941 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 06:37:12,289 Running on GPU
2024-12-05 06:37:15,769 Found 6 citations for tools or databases
2024-12-05 06:37:15,769 Query 1/1: CDC23_LAMTOR2 (length 722)
2024-12-05 06:37:16,068 Sleeping for 8s. Reason: PENDING
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2024-12-05 06:39:10,007 Sleeping for 8s. Reason: PENDING
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2024-12-05 06:40:19,310 Setting max_seq=508, max_extra_seq=2048
2024-12-05 06:43:39,980 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.6 pTM=0.653 ipTM=0.177
2024-12-05 06:43:53,835 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.7 pTM=0.659 ipTM=0.164 tol=1.15
2024-12-05 06:44:07,716 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.9 pTM=0.657 ipTM=0.143 tol=3.68
2024-12-05 06:44:21,596 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.4 pTM=0.657 ipTM=0.16 tol=2.24
2024-12-05 06:44:35,478 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.4 pTM=0.652 ipTM=0.145 tol=2.03
2024-12-05 06:44:49,362 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.1 pTM=0.65 ipTM=0.165 tol=2.4
2024-12-05 06:45:03,249 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.9 pTM=0.658 ipTM=0.183 tol=1.46
2024-12-05 06:45:17,136 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.8 pTM=0.654 ipTM=0.191 tol=0.855
2024-12-05 06:45:31,049 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.3 pTM=0.65 ipTM=0.19 tol=0.953
2024-12-05 06:45:44,946 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.8 pTM=0.654 ipTM=0.196 tol=0.3
2024-12-05 06:45:44,947 alphafold2_multimer_v3_model_1_seed_000 took 319.4s (9 recycles)
2024-12-05 06:45:59,314 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.7 pTM=0.67 ipTM=0.164
2024-12-05 06:46:13,310 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.7 pTM=0.678 ipTM=0.189 tol=2.53
2024-12-05 06:46:27,300 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81 pTM=0.669 ipTM=0.171 tol=1.7
2024-12-05 06:46:41,264 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.6 pTM=0.672 ipTM=0.17 tol=1.34
2024-12-05 06:46:55,264 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.9 pTM=0.675 ipTM=0.169 tol=0.9
2024-12-05 06:47:09,293 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.9 pTM=0.673 ipTM=0.169 tol=0.682
2024-12-05 06:47:23,271 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=82.1 pTM=0.673 ipTM=0.173 tol=0.525
2024-12-05 06:47:37,266 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=82.1 pTM=0.672 ipTM=0.175 tol=0.34
2024-12-05 06:47:37,266 alphafold2_multimer_v3_model_2_seed_000 took 111.9s (7 recycles)
2024-12-05 06:47:51,631 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.5 pTM=0.666 ipTM=0.26
2024-12-05 06:48:05,570 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.8 pTM=0.667 ipTM=0.194 tol=1.76
2024-12-05 06:48:19,524 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.2 pTM=0.671 ipTM=0.206 tol=0.67
2024-12-05 06:48:33,521 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.8 pTM=0.671 ipTM=0.2 tol=0.78
2024-12-05 06:48:47,490 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.7 pTM=0.672 ipTM=0.14 tol=6.48
2024-12-05 06:49:01,436 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=81.2 pTM=0.667 ipTM=0.159 tol=1.82
2024-12-05 06:49:15,434 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=81.6 pTM=0.672 ipTM=0.166 tol=1.04
2024-12-05 06:49:29,396 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.6 pTM=0.671 ipTM=0.172 tol=0.495
2024-12-05 06:49:29,397 alphafold2_multimer_v3_model_3_seed_000 took 111.7s (7 recycles)
2024-12-05 06:49:43,743 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.7 pTM=0.652 ipTM=0.258
2024-12-05 06:49:57,711 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.9 pTM=0.668 ipTM=0.203 tol=5.45
2024-12-05 06:50:11,663 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.2 pTM=0.671 ipTM=0.213 tol=1.14
2024-12-05 06:50:25,591 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.6 pTM=0.671 ipTM=0.224 tol=1.51
2024-12-05 06:50:39,561 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.9 pTM=0.682 ipTM=0.234 tol=1.08
2024-12-05 06:50:53,513 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.7 pTM=0.676 ipTM=0.232 tol=0.783
2024-12-05 06:51:07,468 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.1 pTM=0.684 ipTM=0.237 tol=0.879
2024-12-05 06:51:21,474 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.6 pTM=0.688 ipTM=0.241 tol=2.52
2024-12-05 06:51:35,441 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.2 pTM=0.686 ipTM=0.246 tol=1.92
2024-12-05 06:51:49,388 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.1 pTM=0.683 ipTM=0.241 tol=0.548
2024-12-05 06:52:03,353 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.1 pTM=0.683 ipTM=0.24 tol=0.402
2024-12-05 06:52:03,353 alphafold2_multimer_v3_model_4_seed_000 took 153.5s (10 recycles)
2024-12-05 06:52:17,769 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=81 pTM=0.688 ipTM=0.199
2024-12-05 06:52:31,781 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.1 pTM=0.672 ipTM=0.137 tol=4.39
2024-12-05 06:52:45,766 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=81.9 pTM=0.672 ipTM=0.15 tol=1.08
2024-12-05 06:52:59,801 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.5 pTM=0.677 ipTM=0.17 tol=3.11
2024-12-05 06:53:13,844 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=83.3 pTM=0.689 ipTM=0.212 tol=1.45
2024-12-05 06:53:27,851 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=83.3 pTM=0.693 ipTM=0.252 tol=0.853
2024-12-05 06:53:41,889 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=83.5 pTM=0.688 ipTM=0.215 tol=0.606
2024-12-05 06:53:55,922 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=83.3 pTM=0.686 ipTM=0.222 tol=0.507
2024-12-05 06:54:09,974 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=83.2 pTM=0.687 ipTM=0.213 tol=0.302
2024-12-05 06:54:09,975 alphafold2_multimer_v3_model_5_seed_000 took 126.2s (8 recycles)
2024-12-05 06:54:10,397 reranking models by 'multimer' metric
2024-12-05 06:54:11,362 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 06:54:40,919 Relaxation took 30.5s
2024-12-05 06:54:40,919 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.1 pTM=0.683 ipTM=0.24
2024-12-05 06:55:06,148 Relaxation took 25.2s
2024-12-05 06:55:06,148 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=83.2 pTM=0.687 ipTM=0.213
2024-12-05 06:55:42,609 Relaxation took 36.5s
2024-12-05 06:55:42,609 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.8 pTM=0.654 ipTM=0.196
2024-12-05 06:56:07,440 Relaxation took 24.8s
2024-12-05 06:56:07,440 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=82.1 pTM=0.672 ipTM=0.175
2024-12-05 06:56:28,144 Relaxation took 20.7s
2024-12-05 06:56:28,144 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.6 pTM=0.671 ipTM=0.172
2024-12-05 06:56:29,709 Done