2024-12-05 06:53:50,211 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 06:53:50,513 Running on GPU
2024-12-05 06:53:54,350 Found 6 citations for tools or databases
2024-12-05 06:53:54,350 Query 1/1: CDC27_BUB3 (length 1152)
2024-12-05 06:53:54,639 Sleeping for 10s. Reason: PENDING
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2024-12-05 06:56:52,307 Sleeping for 7s. Reason: RUNNING
2024-12-05 06:57:01,058 Sleeping for 7s. Reason: PENDING
2024-12-05 06:57:08,309 Sleeping for 8s. Reason: RUNNING
2024-12-05 06:57:16,557 Sleeping for 6s. Reason: RUNNING
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2024-12-05 06:57:40,715 Sleeping for 10s. Reason: RUNNING
2024-12-05 06:57:50,984 Sleeping for 9s. Reason: RUNNING
2024-12-05 06:58:00,243 Sleeping for 5s. Reason: RUNNING
2024-12-05 06:58:05,496 Sleeping for 6s. Reason: RUNNING
2024-12-05 06:58:11,749 Sleeping for 9s. Reason: RUNNING
2024-12-05 06:58:21,014 Sleeping for 7s. Reason: RUNNING
2024-12-05 06:58:28,269 Sleeping for 10s. Reason: RUNNING
2024-12-05 06:58:38,536 Sleeping for 7s. Reason: RUNNING
2024-12-05 06:58:45,804 Sleeping for 5s. Reason: RUNNING
2024-12-05 06:58:51,059 Sleeping for 7s. Reason: RUNNING
2024-12-05 06:58:58,314 Sleeping for 9s. Reason: RUNNING
2024-12-05 06:59:10,825 Setting max_seq=508, max_extra_seq=2048
2024-12-05 07:01:26,059 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.5 pTM=0.544 ipTM=0.375
2024-12-05 07:01:53,434 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.8 pTM=0.529 ipTM=0.278 tol=14.5
2024-12-05 07:02:20,896 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=70.9 pTM=0.527 ipTM=0.281 tol=8.21
2024-12-05 07:02:48,407 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=70.6 pTM=0.532 ipTM=0.301 tol=8.18
2024-12-05 07:03:15,968 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=70.6 pTM=0.521 ipTM=0.271 tol=4.87
2024-12-05 07:03:43,516 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=70.2 pTM=0.523 ipTM=0.289 tol=2.72
2024-12-05 07:04:11,118 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=70.4 pTM=0.519 ipTM=0.262 tol=2.55
2024-12-05 07:04:38,698 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=70.2 pTM=0.518 ipTM=0.27 tol=2.69
2024-12-05 07:05:06,293 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=70.6 pTM=0.51 ipTM=0.373 tol=2.21
2024-12-05 07:05:33,874 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=70.4 pTM=0.504 ipTM=0.372 tol=2.79
2024-12-05 07:06:01,485 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=70.8 pTM=0.514 ipTM=0.389 tol=2.74
2024-12-05 07:06:29,063 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=70.4 pTM=0.515 ipTM=0.375 tol=3.23
2024-12-05 07:06:56,675 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=70.7 pTM=0.509 ipTM=0.38 tol=3.51
2024-12-05 07:07:24,246 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=70.4 pTM=0.508 ipTM=0.409 tol=2.76
2024-12-05 07:07:51,873 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=70.9 pTM=0.514 ipTM=0.396 tol=2.61
2024-12-05 07:08:19,449 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=70.3 pTM=0.517 ipTM=0.369 tol=2.83
2024-12-05 07:08:47,087 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=70.7 pTM=0.51 ipTM=0.381 tol=3.49
2024-12-05 07:09:14,684 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=70.5 pTM=0.512 ipTM=0.354 tol=2.95
2024-12-05 07:09:42,319 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=70.8 pTM=0.508 ipTM=0.406 tol=3.03
2024-12-05 07:10:09,937 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=70.2 pTM=0.506 ipTM=0.418 tol=4.12
2024-12-05 07:10:37,534 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=70.7 pTM=0.506 ipTM=0.379 tol=3.67
2024-12-05 07:11:05,156 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=70.5 pTM=0.506 ipTM=0.417 tol=4.54
2024-12-05 07:11:32,714 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=70.6 pTM=0.512 ipTM=0.405 tol=4.25
2024-12-05 07:12:00,259 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=70.5 pTM=0.511 ipTM=0.395 tol=3.48
2024-12-05 07:12:27,849 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=70.8 pTM=0.51 ipTM=0.406 tol=3.05
2024-12-05 07:12:55,465 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=70.1 pTM=0.516 ipTM=0.377 tol=5.43
2024-12-05 07:13:23,080 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=70.7 pTM=0.509 ipTM=0.383 tol=4.27
2024-12-05 07:13:50,638 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=70.5 pTM=0.509 ipTM=0.431 tol=2.31
2024-12-05 07:14:18,240 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=70.8 pTM=0.508 ipTM=0.398 tol=2.79
2024-12-05 07:14:45,836 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=70.5 pTM=0.514 ipTM=0.386 tol=3.35
2024-12-05 07:15:13,413 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=70.6 pTM=0.51 ipTM=0.371 tol=2.28
2024-12-05 07:15:13,414 alphafold2_multimer_v3_model_1_seed_000 took 957.4s (30 recycles)
2024-12-05 07:15:41,832 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=69.2 pTM=0.6 ipTM=0.528
2024-12-05 07:16:09,643 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=71.4 pTM=0.551 ipTM=0.332 tol=18.4
2024-12-05 07:16:37,394 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.7 pTM=0.556 ipTM=0.343 tol=8.12
2024-12-05 07:17:05,142 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.8 pTM=0.552 ipTM=0.341 tol=5.36
2024-12-05 07:17:32,888 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=71.5 pTM=0.553 ipTM=0.345 tol=1.63
2024-12-05 07:18:00,620 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=71.7 pTM=0.549 ipTM=0.335 tol=2.07
2024-12-05 07:18:28,374 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.5 pTM=0.546 ipTM=0.329 tol=2.02
2024-12-05 07:18:56,119 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=71.9 pTM=0.555 ipTM=0.356 tol=1.87
2024-12-05 07:19:23,880 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=71.7 pTM=0.55 ipTM=0.349 tol=2.99
2024-12-05 07:19:51,594 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=71.4 pTM=0.545 ipTM=0.341 tol=2.74
2024-12-05 07:20:19,322 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=71.4 pTM=0.54 ipTM=0.315 tol=1.78
2024-12-05 07:20:47,052 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=71.4 pTM=0.547 ipTM=0.344 tol=1.35
2024-12-05 07:21:14,811 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=71.6 pTM=0.541 ipTM=0.325 tol=2.41
2024-12-05 07:21:42,511 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=71.3 pTM=0.541 ipTM=0.324 tol=1.82
2024-12-05 07:22:10,282 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=71.8 pTM=0.541 ipTM=0.319 tol=1.16
2024-12-05 07:22:37,986 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=71.4 pTM=0.552 ipTM=0.359 tol=1.78
2024-12-05 07:23:05,717 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=71.9 pTM=0.551 ipTM=0.355 tol=1.37
2024-12-05 07:23:33,422 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=71.6 pTM=0.563 ipTM=0.399 tol=1.49
2024-12-05 07:24:01,148 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=71.9 pTM=0.554 ipTM=0.368 tol=1.35
2024-12-05 07:24:28,859 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=71.6 pTM=0.544 ipTM=0.336 tol=1.5
2024-12-05 07:24:56,555 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=71.6 pTM=0.549 ipTM=0.346 tol=1.17
2024-12-05 07:25:24,275 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=71.6 pTM=0.54 ipTM=0.317 tol=1.16
2024-12-05 07:25:51,956 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=71.4 pTM=0.541 ipTM=0.32 tol=1.28
2024-12-05 07:26:19,632 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=71.5 pTM=0.538 ipTM=0.306 tol=1.33
2024-12-05 07:26:47,321 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=71.6 pTM=0.543 ipTM=0.332 tol=1.25
2024-12-05 07:27:14,999 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=71.5 pTM=0.541 ipTM=0.316 tol=1.35
2024-12-05 07:27:42,691 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=71.5 pTM=0.548 ipTM=0.346 tol=1.4
2024-12-05 07:28:10,369 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=71.8 pTM=0.542 ipTM=0.329 tol=1.52
2024-12-05 07:28:38,056 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=71.6 pTM=0.551 ipTM=0.353 tol=2.08
2024-12-05 07:29:05,747 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=71.9 pTM=0.555 ipTM=0.37 tol=2.59
2024-12-05 07:29:33,388 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=71.6 pTM=0.564 ipTM=0.398 tol=2.04
2024-12-05 07:29:33,389 alphafold2_multimer_v3_model_2_seed_000 took 859.2s (30 recycles)
2024-12-05 07:30:01,787 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.8 pTM=0.532 ipTM=0.376
2024-12-05 07:30:29,640 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=70.6 pTM=0.506 ipTM=0.216 tol=13.9
2024-12-05 07:30:57,407 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=70.9 pTM=0.536 ipTM=0.324 tol=4.99
2024-12-05 07:31:25,151 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=71.1 pTM=0.52 ipTM=0.27 tol=5.47
2024-12-05 07:31:52,876 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.5 pTM=0.515 ipTM=0.262 tol=5.43
2024-12-05 07:32:20,579 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=70.6 pTM=0.52 ipTM=0.282 tol=6.93
2024-12-05 07:32:48,310 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=70.7 pTM=0.529 ipTM=0.309 tol=4.02
2024-12-05 07:33:16,050 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=70.9 pTM=0.533 ipTM=0.305 tol=5.52
2024-12-05 07:33:43,788 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=70.8 pTM=0.539 ipTM=0.33 tol=5.47
2024-12-05 07:34:11,528 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=71.1 pTM=0.541 ipTM=0.339 tol=3.4
2024-12-05 07:34:39,275 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=70.9 pTM=0.541 ipTM=0.344 tol=2.87
2024-12-05 07:35:07,029 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=71 pTM=0.536 ipTM=0.328 tol=2.75
2024-12-05 07:35:34,773 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=70.9 pTM=0.545 ipTM=0.358 tol=2.09
2024-12-05 07:36:02,471 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=70.8 pTM=0.527 ipTM=0.307 tol=2.49
2024-12-05 07:36:30,212 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=70.8 pTM=0.546 ipTM=0.364 tol=3.04
2024-12-05 07:36:57,955 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=71 pTM=0.517 ipTM=0.273 tol=3.09
2024-12-05 07:37:25,671 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=70.6 pTM=0.537 ipTM=0.347 tol=4.54
2024-12-05 07:37:53,431 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=71 pTM=0.506 ipTM=0.232 tol=4.6
2024-12-05 07:38:21,198 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=70.6 pTM=0.515 ipTM=0.265 tol=4.47
2024-12-05 07:38:48,920 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=70.8 pTM=0.541 ipTM=0.349 tol=3.29
2024-12-05 07:39:16,666 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=70.8 pTM=0.501 ipTM=0.22 tol=2.87
2024-12-05 07:39:44,439 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=70.4 pTM=0.508 ipTM=0.239 tol=1.86
2024-12-05 07:40:12,195 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=70.9 pTM=0.513 ipTM=0.268 tol=3.3
2024-12-05 07:40:39,947 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=70.9 pTM=0.541 ipTM=0.344 tol=3.33
2024-12-05 07:41:07,751 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=70.9 pTM=0.509 ipTM=0.243 tol=3.26
2024-12-05 07:41:35,515 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=70.4 pTM=0.519 ipTM=0.285 tol=4.77
2024-12-05 07:42:03,298 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=70.9 pTM=0.507 ipTM=0.238 tol=3.72
2024-12-05 07:42:31,020 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=70.7 pTM=0.55 ipTM=0.393 tol=3.65
2024-12-05 07:42:58,830 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=71.1 pTM=0.505 ipTM=0.227 tol=3.99
2024-12-05 07:43:26,597 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=70.4 pTM=0.524 ipTM=0.3 tol=4.73
2024-12-05 07:43:54,373 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=71 pTM=0.509 ipTM=0.249 tol=3.67
2024-12-05 07:43:54,374 alphafold2_multimer_v3_model_3_seed_000 took 860.2s (30 recycles)
2024-12-05 07:44:22,858 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=69.1 pTM=0.499 ipTM=0.191
2024-12-05 07:44:50,675 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=70.3 pTM=0.502 ipTM=0.179 tol=11.7
2024-12-05 07:45:18,503 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=70.4 pTM=0.494 ipTM=0.168 tol=9.88
2024-12-05 07:45:46,267 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=69.6 pTM=0.524 ipTM=0.319 tol=9.18
2024-12-05 07:46:14,084 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=70.4 pTM=0.494 ipTM=0.203 tol=7.91
2024-12-05 07:46:41,893 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=70.1 pTM=0.507 ipTM=0.25 tol=4.98
2024-12-05 07:47:09,750 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=70.3 pTM=0.501 ipTM=0.223 tol=5.72
2024-12-05 07:47:37,597 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=70.2 pTM=0.494 ipTM=0.194 tol=8.4
2024-12-05 07:48:05,449 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=70.3 pTM=0.5 ipTM=0.205 tol=6.06
2024-12-05 07:48:33,305 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=69.9 pTM=0.494 ipTM=0.174 tol=12
2024-12-05 07:49:01,164 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=69.8 pTM=0.489 ipTM=0.17 tol=9.39
2024-12-05 07:49:29,027 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=70.1 pTM=0.496 ipTM=0.175 tol=7.67
2024-12-05 07:49:56,866 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=69.9 pTM=0.49 ipTM=0.174 tol=5.93
2024-12-05 07:50:24,674 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=69.7 pTM=0.496 ipTM=0.235 tol=10.3
2024-12-05 07:50:52,517 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=70.3 pTM=0.503 ipTM=0.23 tol=7.19
2024-12-05 07:51:20,373 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=69.9 pTM=0.5 ipTM=0.228 tol=3.97
2024-12-05 07:51:48,231 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=70.1 pTM=0.497 ipTM=0.216 tol=7.64
2024-12-05 07:52:16,093 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=70 pTM=0.499 ipTM=0.222 tol=6.55
2024-12-05 07:52:43,975 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=70.1 pTM=0.491 ipTM=0.184 tol=7.29
2024-12-05 07:53:11,807 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=69.8 pTM=0.497 ipTM=0.234 tol=10.6
2024-12-05 07:53:39,633 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=70.2 pTM=0.5 ipTM=0.219 tol=6.13
2024-12-05 07:54:07,505 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=70.1 pTM=0.495 ipTM=0.175 tol=13.6
2024-12-05 07:54:35,362 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=69.9 pTM=0.49 ipTM=0.178 tol=8.4
2024-12-05 07:55:03,199 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=70.2 pTM=0.496 ipTM=0.177 tol=9.17
2024-12-05 07:55:31,037 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=69.9 pTM=0.491 ipTM=0.171 tol=8.72
2024-12-05 07:55:58,778 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=66.6 pTM=0.62 ipTM=0.667 tol=15.9
2024-12-05 07:56:26,640 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=70.1 pTM=0.494 ipTM=0.194 tol=12
2024-12-05 07:56:54,507 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=70 pTM=0.493 ipTM=0.172 tol=14.8
2024-12-05 07:57:22,348 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=69.9 pTM=0.49 ipTM=0.184 tol=11.8
2024-12-05 07:57:50,157 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=69.9 pTM=0.496 ipTM=0.205 tol=7.47
2024-12-05 07:58:17,967 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=69.8 pTM=0.493 ipTM=0.2 tol=4.29
2024-12-05 07:58:17,968 alphafold2_multimer_v3_model_4_seed_000 took 862.8s (30 recycles)
2024-12-05 07:58:46,384 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.2 pTM=0.53 ipTM=0.34
2024-12-05 07:59:14,170 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.2 pTM=0.519 ipTM=0.251 tol=8.84
2024-12-05 07:59:41,939 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=70.9 pTM=0.537 ipTM=0.32 tol=8.52
2024-12-05 08:00:09,721 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=71.1 pTM=0.532 ipTM=0.301 tol=6.49
2024-12-05 08:00:37,494 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=71.2 pTM=0.543 ipTM=0.337 tol=4.61
2024-12-05 08:01:05,275 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=71.2 pTM=0.529 ipTM=0.287 tol=3.1
2024-12-05 08:01:33,063 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=71.1 pTM=0.538 ipTM=0.325 tol=2.7
2024-12-05 08:02:00,865 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=71.4 pTM=0.533 ipTM=0.297 tol=4.12
2024-12-05 08:02:28,660 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=71.1 pTM=0.537 ipTM=0.317 tol=5.66
2024-12-05 08:02:56,447 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=71.2 pTM=0.528 ipTM=0.289 tol=4.88
2024-12-05 08:03:24,232 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=71.1 pTM=0.534 ipTM=0.309 tol=4.82
2024-12-05 08:03:52,034 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=71.2 pTM=0.528 ipTM=0.289 tol=1.88
2024-12-05 08:04:19,823 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.2 pTM=0.542 ipTM=0.335 tol=2.76
2024-12-05 08:04:47,597 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=71.1 pTM=0.532 ipTM=0.298 tol=4.18
2024-12-05 08:05:15,386 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.2 pTM=0.544 ipTM=0.345 tol=2.99
2024-12-05 08:05:43,216 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71.2 pTM=0.533 ipTM=0.3 tol=5.21
2024-12-05 08:06:11,013 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=71.1 pTM=0.535 ipTM=0.315 tol=6.27
2024-12-05 08:06:38,813 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=71.2 pTM=0.529 ipTM=0.288 tol=4.47
2024-12-05 08:07:06,603 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=71.1 pTM=0.533 ipTM=0.309 tol=3.07
2024-12-05 08:07:34,391 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=71.2 pTM=0.526 ipTM=0.276 tol=5.16
2024-12-05 08:08:02,171 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=70.9 pTM=0.526 ipTM=0.283 tol=5.6
2024-12-05 08:08:29,980 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=71.2 pTM=0.525 ipTM=0.27 tol=5.61
2024-12-05 08:08:57,754 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=70.9 pTM=0.525 ipTM=0.281 tol=4.75
2024-12-05 08:09:25,541 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=71.2 pTM=0.529 ipTM=0.28 tol=4
2024-12-05 08:09:53,338 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=71 pTM=0.531 ipTM=0.295 tol=2.92
2024-12-05 08:10:21,113 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=71 pTM=0.523 ipTM=0.261 tol=3.39
2024-12-05 08:10:48,902 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=70.9 pTM=0.528 ipTM=0.286 tol=1.63
2024-12-05 08:11:16,664 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=71.2 pTM=0.529 ipTM=0.28 tol=2.01
2024-12-05 08:11:44,439 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=70.8 pTM=0.527 ipTM=0.281 tol=2.09
2024-12-05 08:12:12,195 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=71.1 pTM=0.531 ipTM=0.294 tol=2.73
2024-12-05 08:12:39,974 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=70.9 pTM=0.529 ipTM=0.285 tol=2.65
2024-12-05 08:12:39,975 alphafold2_multimer_v3_model_5_seed_000 took 861.2s (30 recycles)
2024-12-05 08:12:40,786 reranking models by 'multimer' metric
2024-12-05 08:12:42,020 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 08:14:14,797 Relaxation took 94.0s
2024-12-05 08:14:14,797 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=71.6 pTM=0.564 ipTM=0.398
2024-12-05 08:16:05,439 Relaxation took 110.6s
2024-12-05 08:16:05,439 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=70.6 pTM=0.51 ipTM=0.371
2024-12-05 08:18:03,190 Relaxation took 117.7s
2024-12-05 08:18:03,190 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=70.9 pTM=0.529 ipTM=0.285
2024-12-05 08:19:23,419 Relaxation took 80.2s
2024-12-05 08:19:23,419 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=71 pTM=0.509 ipTM=0.249
2024-12-05 08:21:06,926 Relaxation took 103.5s
2024-12-05 08:21:06,926 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=69.8 pTM=0.493 ipTM=0.2
2024-12-05 08:21:09,184 Done