2024-12-05 07:18:49,625 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 07:18:49,953 Running on GPU
2024-12-05 07:18:53,675 Found 6 citations for tools or databases
2024-12-05 07:18:53,675 Query 1/1: CIAO1_CDKAL1 (length 918)
2024-12-05 07:18:53,982 Sleeping for 8s. Reason: PENDING
2024-12-05 07:19:02,239 Sleeping for 7s. Reason: RUNNING
2024-12-05 07:19:09,500 Sleeping for 10s. Reason: RUNNING
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2024-12-05 07:21:49,897 Sleeping for 8s. Reason: RUNNING
2024-12-05 07:21:58,157 Sleeping for 5s. Reason: RUNNING
2024-12-05 07:22:03,418 Sleeping for 6s. Reason: RUNNING
2024-12-05 07:22:09,676 Sleeping for 10s. Reason: RUNNING
2024-12-05 07:22:19,933 Sleeping for 5s. Reason: RUNNING
2024-12-05 07:22:25,186 Sleeping for 5s. Reason: RUNNING
2024-12-05 07:22:30,439 Sleeping for 9s. Reason: RUNNING
2024-12-05 07:22:39,712 Sleeping for 6s. Reason: RUNNING
2024-12-05 07:22:45,970 Sleeping for 7s. Reason: RUNNING
2024-12-05 07:22:55,150 Sleeping for 10s. Reason: PENDING
2024-12-05 07:23:05,405 Sleeping for 9s. Reason: RUNNING
2024-12-05 07:23:14,660 Sleeping for 9s. Reason: RUNNING
2024-12-05 07:23:23,922 Sleeping for 9s. Reason: RUNNING
2024-12-05 07:23:33,194 Sleeping for 9s. Reason: RUNNING
2024-12-05 07:23:42,460 Sleeping for 8s. Reason: RUNNING
2024-12-05 07:23:50,716 Sleeping for 6s. Reason: RUNNING
2024-12-05 07:23:56,971 Sleeping for 10s. Reason: RUNNING
2024-12-05 07:24:07,228 Sleeping for 5s. Reason: RUNNING
2024-12-05 07:24:12,479 Sleeping for 10s. Reason: RUNNING
2024-12-05 07:24:22,740 Sleeping for 7s. Reason: RUNNING
2024-12-05 07:24:29,997 Sleeping for 5s. Reason: RUNNING
2024-12-05 07:24:35,253 Sleeping for 10s. Reason: RUNNING
2024-12-05 07:24:45,506 Sleeping for 7s. Reason: RUNNING
2024-12-05 07:24:52,763 Sleeping for 10s. Reason: RUNNING
2024-12-05 07:25:03,025 Sleeping for 7s. Reason: RUNNING
2024-12-05 07:25:10,438 Sleeping for 5s. Reason: RUNNING
2024-12-05 07:25:15,691 Sleeping for 8s. Reason: RUNNING
2024-12-05 07:25:23,956 Sleeping for 9s. Reason: RUNNING
2024-12-05 07:25:33,214 Sleeping for 8s. Reason: RUNNING
2024-12-05 07:25:45,550 Setting max_seq=508, max_extra_seq=2048
2024-12-05 07:28:30,168 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.2 pTM=0.531 ipTM=0.272
2024-12-05 07:28:49,398 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.1 pTM=0.53 ipTM=0.347 tol=4.68
2024-12-05 07:29:08,661 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80 pTM=0.524 ipTM=0.302 tol=2.69
2024-12-05 07:29:27,918 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.1 pTM=0.534 ipTM=0.323 tol=12.8
2024-12-05 07:29:47,249 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.2 pTM=0.519 ipTM=0.323 tol=5.3
2024-12-05 07:30:06,595 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.7 pTM=0.518 ipTM=0.218 tol=5.19
2024-12-05 07:30:25,963 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.9 pTM=0.52 ipTM=0.207 tol=5.44
2024-12-05 07:30:45,326 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80 pTM=0.522 ipTM=0.197 tol=3.05
2024-12-05 07:31:04,708 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.2 pTM=0.518 ipTM=0.198 tol=4.62
2024-12-05 07:31:24,094 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80.1 pTM=0.521 ipTM=0.222 tol=3.91
2024-12-05 07:31:43,476 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=79.9 pTM=0.52 ipTM=0.215 tol=1.85
2024-12-05 07:32:02,861 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=80.1 pTM=0.523 ipTM=0.244 tol=1.85
2024-12-05 07:32:22,252 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80.1 pTM=0.519 ipTM=0.28 tol=1.73
2024-12-05 07:32:41,638 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=80 pTM=0.522 ipTM=0.287 tol=2.13
2024-12-05 07:33:01,013 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=79.8 pTM=0.517 ipTM=0.264 tol=1.62
2024-12-05 07:33:20,385 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=80.1 pTM=0.525 ipTM=0.263 tol=1.31
2024-12-05 07:33:39,777 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=80.2 pTM=0.524 ipTM=0.262 tol=0.891
2024-12-05 07:33:59,182 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=80.4 pTM=0.527 ipTM=0.315 tol=0.932
2024-12-05 07:34:18,583 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=80.1 pTM=0.525 ipTM=0.254 tol=1.8
2024-12-05 07:34:37,985 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=79.9 pTM=0.522 ipTM=0.262 tol=1.22
2024-12-05 07:34:57,395 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=79.9 pTM=0.518 ipTM=0.278 tol=1.47
2024-12-05 07:35:16,795 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=80 pTM=0.522 ipTM=0.259 tol=2.09
2024-12-05 07:35:36,198 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=80 pTM=0.519 ipTM=0.25 tol=2.19
2024-12-05 07:35:55,601 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=80.3 pTM=0.524 ipTM=0.389 tol=1.92
2024-12-05 07:36:15,000 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=79.9 pTM=0.52 ipTM=0.277 tol=1.65
2024-12-05 07:36:34,394 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=79.9 pTM=0.522 ipTM=0.266 tol=3.62
2024-12-05 07:36:53,812 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=80.1 pTM=0.52 ipTM=0.262 tol=2.7
2024-12-05 07:37:13,203 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=80.2 pTM=0.522 ipTM=0.359 tol=1.32
2024-12-05 07:37:32,603 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=80.2 pTM=0.529 ipTM=0.271 tol=1.98
2024-12-05 07:37:52,032 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=80.2 pTM=0.525 ipTM=0.255 tol=3.5
2024-12-05 07:38:11,435 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=80 pTM=0.522 ipTM=0.245 tol=2.55
2024-12-05 07:38:11,435 alphafold2_multimer_v3_model_1_seed_000 took 740.6s (30 recycles)
2024-12-05 07:38:31,403 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.8 pTM=0.538 ipTM=0.24
2024-12-05 07:38:50,863 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.4 pTM=0.536 ipTM=0.272 tol=10.5
2024-12-05 07:39:10,330 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.5 pTM=0.538 ipTM=0.346 tol=4.92
2024-12-05 07:39:29,782 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81 pTM=0.538 ipTM=0.325 tol=3.88
2024-12-05 07:39:49,239 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.9 pTM=0.536 ipTM=0.298 tol=2.7
2024-12-05 07:40:08,709 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81 pTM=0.535 ipTM=0.314 tol=2.08
2024-12-05 07:40:28,169 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.9 pTM=0.536 ipTM=0.286 tol=0.975
2024-12-05 07:40:47,630 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81 pTM=0.536 ipTM=0.26 tol=0.957
2024-12-05 07:41:07,091 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81 pTM=0.534 ipTM=0.306 tol=0.674
2024-12-05 07:41:26,547 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=80.9 pTM=0.533 ipTM=0.333 tol=0.889
2024-12-05 07:41:46,001 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=80.8 pTM=0.534 ipTM=0.292 tol=1.22
2024-12-05 07:42:05,460 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=80.8 pTM=0.534 ipTM=0.282 tol=1.5
2024-12-05 07:42:24,928 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=80.8 pTM=0.537 ipTM=0.287 tol=0.681
2024-12-05 07:42:44,409 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=80.9 pTM=0.535 ipTM=0.308 tol=1.84
2024-12-05 07:43:03,874 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=80.8 pTM=0.532 ipTM=0.273 tol=1.48
2024-12-05 07:43:23,335 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=80.4 pTM=0.529 ipTM=0.224 tol=1.46
2024-12-05 07:43:42,812 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=80.6 pTM=0.531 ipTM=0.208 tol=1.84
2024-12-05 07:44:02,286 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=80.7 pTM=0.53 ipTM=0.231 tol=1.83
2024-12-05 07:44:21,753 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=80.7 pTM=0.533 ipTM=0.23 tol=1.11
2024-12-05 07:44:41,222 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=80.5 pTM=0.53 ipTM=0.205 tol=1.28
2024-12-05 07:45:00,686 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=80.4 pTM=0.531 ipTM=0.202 tol=1.25
2024-12-05 07:45:20,146 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=80.5 pTM=0.532 ipTM=0.238 tol=0.874
2024-12-05 07:45:39,601 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=80.5 pTM=0.529 ipTM=0.274 tol=1
2024-12-05 07:45:59,069 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=80.5 pTM=0.526 ipTM=0.274 tol=1.31
2024-12-05 07:46:18,535 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=80.5 pTM=0.53 ipTM=0.276 tol=1.51
2024-12-05 07:46:37,989 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=80.4 pTM=0.532 ipTM=0.276 tol=1.29
2024-12-05 07:46:57,458 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=80.6 pTM=0.533 ipTM=0.302 tol=1.12
2024-12-05 07:47:16,910 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=80.5 pTM=0.53 ipTM=0.289 tol=0.981
2024-12-05 07:47:36,369 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=80.7 pTM=0.535 ipTM=0.329 tol=1.05
2024-12-05 07:47:55,838 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=80.5 pTM=0.529 ipTM=0.307 tol=1.09
2024-12-05 07:48:15,303 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=80.6 pTM=0.536 ipTM=0.279 tol=1.21
2024-12-05 07:48:15,304 alphafold2_multimer_v3_model_2_seed_000 took 603.3s (30 recycles)
2024-12-05 07:48:35,326 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.6 pTM=0.546 ipTM=0.28
2024-12-05 07:48:54,865 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.2 pTM=0.533 ipTM=0.303 tol=5.34
2024-12-05 07:49:14,405 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.6 pTM=0.534 ipTM=0.294 tol=2.72
2024-12-05 07:49:33,962 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.4 pTM=0.533 ipTM=0.255 tol=2.31
2024-12-05 07:49:53,484 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.4 pTM=0.538 ipTM=0.249 tol=6.19
2024-12-05 07:50:13,024 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.8 pTM=0.54 ipTM=0.284 tol=2.41
2024-12-05 07:50:32,542 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.9 pTM=0.546 ipTM=0.244 tol=1.38
2024-12-05 07:50:52,100 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.9 pTM=0.54 ipTM=0.23 tol=2.19
2024-12-05 07:51:11,633 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.9 pTM=0.551 ipTM=0.281 tol=2.64
2024-12-05 07:51:31,181 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=80.8 pTM=0.541 ipTM=0.26 tol=1.88
2024-12-05 07:51:50,721 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.8 pTM=0.549 ipTM=0.236 tol=2.33
2024-12-05 07:52:10,280 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.8 pTM=0.545 ipTM=0.237 tol=1.66
2024-12-05 07:52:29,839 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.8 pTM=0.54 ipTM=0.227 tol=6.39
2024-12-05 07:52:49,407 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.9 pTM=0.551 ipTM=0.301 tol=5.3
2024-12-05 07:53:08,960 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=81.1 pTM=0.543 ipTM=0.225 tol=2.1
2024-12-05 07:53:28,510 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=80.9 pTM=0.538 ipTM=0.241 tol=1.9
2024-12-05 07:53:48,056 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=80.9 pTM=0.538 ipTM=0.221 tol=7.45
2024-12-05 07:54:07,621 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=81 pTM=0.537 ipTM=0.244 tol=6.24
2024-12-05 07:54:27,142 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=80.7 pTM=0.536 ipTM=0.213 tol=3.45
2024-12-05 07:54:46,668 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=80.8 pTM=0.539 ipTM=0.226 tol=3.55
2024-12-05 07:55:06,206 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=80.9 pTM=0.543 ipTM=0.218 tol=4.57
2024-12-05 07:55:25,743 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=80.6 pTM=0.543 ipTM=0.221 tol=5.78
2024-12-05 07:55:45,308 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=80.6 pTM=0.536 ipTM=0.325 tol=6.8
2024-12-05 07:56:04,870 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=80.8 pTM=0.537 ipTM=0.232 tol=5.62
2024-12-05 07:56:24,401 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=80.7 pTM=0.541 ipTM=0.241 tol=4.15
2024-12-05 07:56:43,950 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=80.8 pTM=0.537 ipTM=0.288 tol=4.49
2024-12-05 07:57:03,487 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=80.5 pTM=0.535 ipTM=0.249 tol=6.68
2024-12-05 07:57:23,020 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=81.1 pTM=0.539 ipTM=0.251 tol=4.82
2024-12-05 07:57:42,526 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=80.9 pTM=0.541 ipTM=0.25 tol=5
2024-12-05 07:58:02,071 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=81.1 pTM=0.54 ipTM=0.212 tol=5.12
2024-12-05 07:58:21,591 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=80.8 pTM=0.538 ipTM=0.229 tol=2.68
2024-12-05 07:58:21,592 alphafold2_multimer_v3_model_3_seed_000 took 605.8s (30 recycles)
2024-12-05 07:58:41,583 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.4 pTM=0.544 ipTM=0.319
2024-12-05 07:59:01,105 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.4 pTM=0.539 ipTM=0.319 tol=2.57
2024-12-05 07:59:20,595 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.1 pTM=0.54 ipTM=0.289 tol=2.76
2024-12-05 07:59:40,103 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=80.1 pTM=0.534 ipTM=0.237 tol=1.89
2024-12-05 07:59:59,650 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.6 pTM=0.539 ipTM=0.218 tol=1.87
2024-12-05 08:00:19,174 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.6 pTM=0.535 ipTM=0.227 tol=1.58
2024-12-05 08:00:38,706 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.6 pTM=0.54 ipTM=0.222 tol=5.28
2024-12-05 08:00:58,270 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.8 pTM=0.537 ipTM=0.214 tol=6.46
2024-12-05 08:01:17,829 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.9 pTM=0.54 ipTM=0.23 tol=4.05
2024-12-05 08:01:37,373 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.9 pTM=0.538 ipTM=0.21 tol=3.8
2024-12-05 08:01:56,919 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.8 pTM=0.541 ipTM=0.216 tol=3.4
2024-12-05 08:02:16,456 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=80.8 pTM=0.537 ipTM=0.194 tol=2.63
2024-12-05 08:02:35,992 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80.6 pTM=0.538 ipTM=0.224 tol=2.35
2024-12-05 08:02:55,530 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=80.9 pTM=0.537 ipTM=0.208 tol=1.82
2024-12-05 08:03:15,088 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80.9 pTM=0.539 ipTM=0.195 tol=1.95
2024-12-05 08:03:34,637 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=80.8 pTM=0.535 ipTM=0.231 tol=1.82
2024-12-05 08:03:54,195 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=80.9 pTM=0.539 ipTM=0.188 tol=1.81
2024-12-05 08:04:13,751 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=80.9 pTM=0.54 ipTM=0.218 tol=2.74
2024-12-05 08:04:33,295 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=80.7 pTM=0.538 ipTM=0.199 tol=3.63
2024-12-05 08:04:52,843 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=81.1 pTM=0.538 ipTM=0.207 tol=3.62
2024-12-05 08:05:12,401 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=80.7 pTM=0.54 ipTM=0.211 tol=4.6
2024-12-05 08:05:31,959 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=81.1 pTM=0.538 ipTM=0.212 tol=4.46
2024-12-05 08:05:51,522 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80.9 pTM=0.541 ipTM=0.224 tol=2.68
2024-12-05 08:06:11,073 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=80.8 pTM=0.537 ipTM=0.227 tol=3.41
2024-12-05 08:06:30,609 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=80.8 pTM=0.54 ipTM=0.211 tol=3.18
2024-12-05 08:06:50,165 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=80.9 pTM=0.536 ipTM=0.222 tol=2.36
2024-12-05 08:07:09,706 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.7 pTM=0.538 ipTM=0.221 tol=2.07
2024-12-05 08:07:29,263 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80.9 pTM=0.537 ipTM=0.236 tol=2.17
2024-12-05 08:07:48,807 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=80.8 pTM=0.546 ipTM=0.234 tol=2.82
2024-12-05 08:08:08,377 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=81 pTM=0.538 ipTM=0.193 tol=5.51
2024-12-05 08:08:27,940 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=80.8 pTM=0.54 ipTM=0.221 tol=4.32
2024-12-05 08:08:27,940 alphafold2_multimer_v3_model_4_seed_000 took 605.8s (30 recycles)
2024-12-05 08:08:47,953 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=80.1 pTM=0.584 ipTM=0.303
2024-12-05 08:09:07,486 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.7 pTM=0.537 ipTM=0.214 tol=11.4
2024-12-05 08:09:27,042 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=80.8 pTM=0.539 ipTM=0.275 tol=11.6
2024-12-05 08:09:46,607 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.6 pTM=0.532 ipTM=0.276 tol=6.76
2024-12-05 08:10:06,166 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.8 pTM=0.536 ipTM=0.245 tol=3.6
2024-12-05 08:10:25,743 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.9 pTM=0.532 ipTM=0.233 tol=2.55
2024-12-05 08:10:45,300 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=81.1 pTM=0.538 ipTM=0.236 tol=4.26
2024-12-05 08:11:04,861 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=81.1 pTM=0.532 ipTM=0.216 tol=4.59
2024-12-05 08:11:24,407 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=81.2 pTM=0.541 ipTM=0.249 tol=5.57
2024-12-05 08:11:43,965 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=81.2 pTM=0.533 ipTM=0.246 tol=5.27
2024-12-05 08:12:03,494 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.9 pTM=0.537 ipTM=0.235 tol=6.48
2024-12-05 08:12:23,026 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.9 pTM=0.533 ipTM=0.191 tol=1.93
2024-12-05 08:12:42,560 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=81 pTM=0.538 ipTM=0.227 tol=3.28
2024-12-05 08:13:02,148 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=81.1 pTM=0.534 ipTM=0.197 tol=3.09
2024-12-05 08:13:21,764 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=81.2 pTM=0.536 ipTM=0.212 tol=1.65
2024-12-05 08:13:41,333 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=81.2 pTM=0.535 ipTM=0.194 tol=2.31
2024-12-05 08:14:00,892 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=81.1 pTM=0.536 ipTM=0.21 tol=2.77
2024-12-05 08:14:20,461 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=81 pTM=0.535 ipTM=0.202 tol=3.12
2024-12-05 08:14:39,996 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=80.8 pTM=0.534 ipTM=0.207 tol=2.87
2024-12-05 08:14:59,558 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=81.1 pTM=0.535 ipTM=0.212 tol=3.81
2024-12-05 08:15:19,115 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80.8 pTM=0.534 ipTM=0.209 tol=4.54
2024-12-05 08:15:38,691 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=81 pTM=0.541 ipTM=0.237 tol=5.17
2024-12-05 08:15:58,315 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=81.1 pTM=0.536 ipTM=0.223 tol=4.86
2024-12-05 08:16:17,876 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=81.2 pTM=0.537 ipTM=0.203 tol=4.85
2024-12-05 08:16:37,426 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=81.1 pTM=0.536 ipTM=0.205 tol=5.55
2024-12-05 08:16:56,963 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=81 pTM=0.537 ipTM=0.225 tol=6.04
2024-12-05 08:17:16,487 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=80.9 pTM=0.536 ipTM=0.26 tol=2.25
2024-12-05 08:17:36,026 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=81 pTM=0.534 ipTM=0.211 tol=2.69
2024-12-05 08:17:55,553 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=81.1 pTM=0.535 ipTM=0.225 tol=2.47
2024-12-05 08:18:15,134 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=80.9 pTM=0.533 ipTM=0.201 tol=5
2024-12-05 08:18:34,698 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=80.8 pTM=0.541 ipTM=0.228 tol=7.64
2024-12-05 08:18:34,698 alphafold2_multimer_v3_model_5_seed_000 took 606.2s (30 recycles)
2024-12-05 08:18:35,227 reranking models by 'multimer' metric
2024-12-05 08:18:36,127 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 08:20:14,012 Relaxation took 98.8s
2024-12-05 08:20:14,012 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.6 pTM=0.536 ipTM=0.279
2024-12-05 08:20:52,142 Relaxation took 38.1s
2024-12-05 08:20:52,142 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80 pTM=0.522 ipTM=0.245
2024-12-05 08:22:09,828 Relaxation took 77.7s
2024-12-05 08:22:09,828 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.8 pTM=0.538 ipTM=0.229
2024-12-05 08:23:09,236 Relaxation took 59.4s
2024-12-05 08:23:09,236 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.8 pTM=0.541 ipTM=0.228
2024-12-05 08:24:15,575 Relaxation took 66.3s
2024-12-05 08:24:15,575 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.8 pTM=0.54 ipTM=0.221
2024-12-05 08:24:17,328 Done