2024-12-05 10:25:40,893 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 10:25:41,219 Running on GPU
2024-12-05 10:25:44,933 Found 6 citations for tools or databases
2024-12-05 10:25:44,933 Query 1/1: DCAF13_PEA15 (length 575)
2024-12-05 10:25:47,843 Setting max_seq=508, max_extra_seq=2048
2024-12-05 10:28:37,379 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.8 pTM=0.635 ipTM=0.124
2024-12-05 10:28:44,041 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=74.6 pTM=0.645 ipTM=0.128 tol=3.77
2024-12-05 10:28:50,705 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=74.5 pTM=0.647 ipTM=0.132 tol=1.2
2024-12-05 10:28:57,375 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.1 pTM=0.646 ipTM=0.141 tol=0.562
2024-12-05 10:29:04,048 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=74.7 pTM=0.649 ipTM=0.13 tol=0.854
2024-12-05 10:29:10,730 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=74.8 pTM=0.651 ipTM=0.136 tol=0.68
2024-12-05 10:29:17,411 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=75.1 pTM=0.653 ipTM=0.136 tol=0.765
2024-12-05 10:29:24,100 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.4 pTM=0.654 ipTM=0.133 tol=1.34
2024-12-05 10:29:30,788 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.4 pTM=0.658 ipTM=0.136 tol=0.654
2024-12-05 10:29:37,508 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.4 pTM=0.655 ipTM=0.131 tol=0.391
2024-12-05 10:29:37,509 alphafold2_multimer_v3_model_1_seed_000 took 224.3s (9 recycles)
2024-12-05 10:29:44,426 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.6 pTM=0.628 ipTM=0.132
2024-12-05 10:29:51,143 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.9 pTM=0.673 ipTM=0.186 tol=4.44
2024-12-05 10:29:57,865 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.6 pTM=0.668 ipTM=0.148 tol=1.99
2024-12-05 10:30:04,587 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.3 pTM=0.662 ipTM=0.136 tol=1.23
2024-12-05 10:30:11,300 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.3 pTM=0.664 ipTM=0.142 tol=0.457
2024-12-05 10:30:11,300 alphafold2_multimer_v3_model_2_seed_000 took 33.6s (4 recycles)
2024-12-05 10:30:18,233 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.2 pTM=0.638 ipTM=0.133
2024-12-05 10:30:24,953 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.3 pTM=0.64 ipTM=0.158 tol=5.05
2024-12-05 10:30:31,664 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=74 pTM=0.634 ipTM=0.152 tol=3.37
2024-12-05 10:30:38,424 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.8 pTM=0.635 ipTM=0.15 tol=4.02
2024-12-05 10:30:45,167 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.9 pTM=0.637 ipTM=0.171 tol=2.63
2024-12-05 10:30:51,917 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=73.6 pTM=0.631 ipTM=0.163 tol=1.31
2024-12-05 10:30:58,656 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=73.8 pTM=0.63 ipTM=0.161 tol=1.17
2024-12-05 10:31:05,397 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=73.3 pTM=0.63 ipTM=0.167 tol=1.18
2024-12-05 10:31:12,117 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=73.6 pTM=0.633 ipTM=0.167 tol=1.33
2024-12-05 10:31:18,838 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=73.2 pTM=0.627 ipTM=0.161 tol=0.953
2024-12-05 10:31:25,566 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=73.4 pTM=0.633 ipTM=0.161 tol=0.849
2024-12-05 10:31:32,299 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=73.2 pTM=0.629 ipTM=0.16 tol=0.649
2024-12-05 10:31:39,017 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.5 pTM=0.63 ipTM=0.161 tol=1.4
2024-12-05 10:31:45,738 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=73.7 pTM=0.636 ipTM=0.163 tol=1.71
2024-12-05 10:31:52,471 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=73.5 pTM=0.631 ipTM=0.169 tol=1.38
2024-12-05 10:31:59,202 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=73.2 pTM=0.628 ipTM=0.16 tol=0.815
2024-12-05 10:32:05,972 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=73.2 pTM=0.629 ipTM=0.167 tol=0.893
2024-12-05 10:32:12,703 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.1 pTM=0.628 ipTM=0.166 tol=1.16
2024-12-05 10:32:19,432 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.3 pTM=0.629 ipTM=0.169 tol=0.989
2024-12-05 10:32:26,156 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=73.2 pTM=0.632 ipTM=0.169 tol=1.06
2024-12-05 10:32:32,877 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=73.1 pTM=0.628 ipTM=0.172 tol=0.8
2024-12-05 10:32:39,592 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=72.8 pTM=0.626 ipTM=0.17 tol=1.02
2024-12-05 10:32:46,329 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=73.1 pTM=0.627 ipTM=0.167 tol=0.745
2024-12-05 10:32:53,055 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=72.6 pTM=0.624 ipTM=0.165 tol=0.757
2024-12-05 10:32:59,785 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=73 pTM=0.626 ipTM=0.169 tol=0.963
2024-12-05 10:33:06,514 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=72.9 pTM=0.626 ipTM=0.162 tol=0.701
2024-12-05 10:33:13,242 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=72.8 pTM=0.627 ipTM=0.171 tol=0.5
2024-12-05 10:33:19,976 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=72.8 pTM=0.624 ipTM=0.169 tol=0.606
2024-12-05 10:33:26,727 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=73.1 pTM=0.629 ipTM=0.172 tol=0.372
2024-12-05 10:33:26,727 alphafold2_multimer_v3_model_3_seed_000 took 195.2s (28 recycles)
2024-12-05 10:33:33,685 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.8 pTM=0.617 ipTM=0.141
2024-12-05 10:33:40,397 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.9 pTM=0.643 ipTM=0.183 tol=3.44
2024-12-05 10:33:47,128 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=72.8 pTM=0.636 ipTM=0.155 tol=3.27
2024-12-05 10:33:53,843 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.5 pTM=0.636 ipTM=0.162 tol=1.19
2024-12-05 10:34:00,562 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.3 pTM=0.633 ipTM=0.156 tol=0.663
2024-12-05 10:34:07,267 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.8 pTM=0.626 ipTM=0.15 tol=0.582
2024-12-05 10:34:13,979 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.8 pTM=0.628 ipTM=0.151 tol=0.821
2024-12-05 10:34:20,687 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=71.8 pTM=0.626 ipTM=0.15 tol=0.439
2024-12-05 10:34:20,687 alphafold2_multimer_v3_model_4_seed_000 took 53.7s (7 recycles)
2024-12-05 10:34:27,644 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.8 pTM=0.631 ipTM=0.125
2024-12-05 10:34:34,388 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.8 pTM=0.625 ipTM=0.146 tol=5.52
2024-12-05 10:34:41,139 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=71.8 pTM=0.622 ipTM=0.142 tol=5.33
2024-12-05 10:34:47,890 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=71.8 pTM=0.626 ipTM=0.157 tol=1.35
2024-12-05 10:34:54,638 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=71.7 pTM=0.625 ipTM=0.154 tol=0.916
2024-12-05 10:35:01,378 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=71.9 pTM=0.622 ipTM=0.145 tol=0.723
2024-12-05 10:35:08,114 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=71.8 pTM=0.624 ipTM=0.149 tol=0.674
2024-12-05 10:35:14,854 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=71.8 pTM=0.622 ipTM=0.146 tol=0.9
2024-12-05 10:35:21,598 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=71.6 pTM=0.624 ipTM=0.15 tol=1.1
2024-12-05 10:35:28,343 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=71.4 pTM=0.62 ipTM=0.153 tol=0.762
2024-12-05 10:35:35,092 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=71 pTM=0.62 ipTM=0.158 tol=0.662
2024-12-05 10:35:41,858 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=71.1 pTM=0.617 ipTM=0.151 tol=0.622
2024-12-05 10:35:48,600 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.6 pTM=0.618 ipTM=0.145 tol=0.928
2024-12-05 10:35:55,353 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=71.2 pTM=0.621 ipTM=0.159 tol=1.2
2024-12-05 10:36:02,090 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.2 pTM=0.619 ipTM=0.155 tol=0.767
2024-12-05 10:36:08,847 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71 pTM=0.618 ipTM=0.153 tol=0.489
2024-12-05 10:36:08,848 alphafold2_multimer_v3_model_5_seed_000 took 107.9s (15 recycles)
2024-12-05 10:36:09,068 reranking models by 'multimer' metric
2024-12-05 10:36:10,925 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 10:36:51,324 Relaxation took 42.3s
2024-12-05 10:36:51,325 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.1 pTM=0.629 ipTM=0.172
2024-12-05 10:37:32,263 Relaxation took 40.9s
2024-12-05 10:37:32,263 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=71 pTM=0.618 ipTM=0.153
2024-12-05 10:38:00,323 Relaxation took 28.1s
2024-12-05 10:38:00,323 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.3 pTM=0.664 ipTM=0.142
2024-12-05 10:38:25,688 Relaxation took 25.4s
2024-12-05 10:38:25,688 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=71.8 pTM=0.626 ipTM=0.15
2024-12-05 10:38:40,883 Relaxation took 15.2s
2024-12-05 10:38:40,883 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75.4 pTM=0.655 ipTM=0.131
2024-12-05 10:38:42,063 Done