2024-12-05 14:16:09,678 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 14:16:10,152 Running on GPU
2024-12-05 14:16:14,154 Found 6 citations for tools or databases
2024-12-05 14:16:14,154 Query 1/1: DDB2_KHDC1 (length 664)
2024-12-05 14:16:14,450 Sleeping for 10s. Reason: PENDING
2024-12-05 14:16:24,713 Sleeping for 9s. Reason: RUNNING
2024-12-05 14:16:33,974 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:16:41,228 Sleeping for 5s. Reason: RUNNING
2024-12-05 14:16:46,487 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:16:52,739 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:17:03,002 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:17:10,257 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:17:20,519 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:17:26,783 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:17:33,039 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:17:43,301 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:17:49,564 Sleeping for 8s. Reason: RUNNING
2024-12-05 14:17:57,830 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:18:08,096 Sleeping for 8s. Reason: RUNNING
2024-12-05 14:18:17,479 Sleeping for 6s. Reason: PENDING
2024-12-05 14:18:23,735 Sleeping for 10s. Reason: PENDING
2024-12-05 14:18:33,993 Sleeping for 5s. Reason: PENDING
2024-12-05 14:18:39,244 Sleeping for 9s. Reason: RUNNING
2024-12-05 14:18:48,505 Sleeping for 5s. Reason: RUNNING
2024-12-05 14:18:53,758 Sleeping for 9s. Reason: RUNNING
2024-12-05 14:19:03,012 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:19:09,278 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:19:19,538 Sleeping for 8s. Reason: RUNNING
2024-12-05 14:19:27,796 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:19:38,054 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:19:49,372 Setting max_seq=508, max_extra_seq=1794
2024-12-05 14:21:53,790 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.3 pTM=0.598 ipTM=0.267
2024-12-05 14:22:02,164 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=66.1 pTM=0.551 ipTM=0.144 tol=8.18
2024-12-05 14:22:10,539 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=66 pTM=0.549 ipTM=0.146 tol=4.22
2024-12-05 14:22:18,916 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=65.5 pTM=0.547 ipTM=0.14 tol=3.65
2024-12-05 14:22:27,279 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=65.2 pTM=0.542 ipTM=0.141 tol=8.64
2024-12-05 14:22:35,638 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=64.5 pTM=0.547 ipTM=0.151 tol=8.45
2024-12-05 14:22:44,025 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=65 pTM=0.547 ipTM=0.152 tol=4.75
2024-12-05 14:22:52,422 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=65.3 pTM=0.551 ipTM=0.161 tol=2.25
2024-12-05 14:23:00,824 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=65.2 pTM=0.546 ipTM=0.152 tol=3.31
2024-12-05 14:23:09,231 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=65.2 pTM=0.553 ipTM=0.166 tol=2.63
2024-12-05 14:23:17,652 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=65.2 pTM=0.547 ipTM=0.154 tol=1.76
2024-12-05 14:23:26,057 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=65.3 pTM=0.556 ipTM=0.182 tol=2.43
2024-12-05 14:23:34,483 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=65.4 pTM=0.546 ipTM=0.153 tol=1.59
2024-12-05 14:23:42,901 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.3 pTM=0.553 ipTM=0.171 tol=1.7
2024-12-05 14:23:51,313 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=64.9 pTM=0.544 ipTM=0.15 tol=1.82
2024-12-05 14:23:59,734 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.4 pTM=0.562 ipTM=0.203 tol=1.91
2024-12-05 14:24:08,171 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.9 pTM=0.564 ipTM=0.188 tol=3.08
2024-12-05 14:24:16,619 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.6 pTM=0.56 ipTM=0.172 tol=2.7
2024-12-05 14:24:25,063 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=65.3 pTM=0.546 ipTM=0.15 tol=3.54
2024-12-05 14:24:33,507 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=65.4 pTM=0.552 ipTM=0.161 tol=2.04
2024-12-05 14:24:41,950 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=64.5 pTM=0.543 ipTM=0.148 tol=8.02
2024-12-05 14:24:50,364 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=65.2 pTM=0.549 ipTM=0.163 tol=8.02
2024-12-05 14:24:58,803 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=65.2 pTM=0.548 ipTM=0.152 tol=3.36
2024-12-05 14:25:07,247 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=65.2 pTM=0.555 ipTM=0.166 tol=2.57
2024-12-05 14:25:15,691 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=65.1 pTM=0.544 ipTM=0.145 tol=1.89
2024-12-05 14:25:24,118 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=65.1 pTM=0.553 ipTM=0.17 tol=2.79
2024-12-05 14:25:32,554 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=65.1 pTM=0.544 ipTM=0.149 tol=2.67
2024-12-05 14:25:40,990 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=64.9 pTM=0.55 ipTM=0.159 tol=3.8
2024-12-05 14:25:49,423 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=64.9 pTM=0.542 ipTM=0.144 tol=6.32
2024-12-05 14:25:57,849 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=65.2 pTM=0.552 ipTM=0.166 tol=4.67
2024-12-05 14:26:06,280 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=65.6 pTM=0.548 ipTM=0.153 tol=2.6
2024-12-05 14:26:06,281 alphafold2_multimer_v3_model_1_seed_000 took 373.3s (30 recycles)
2024-12-05 14:26:15,051 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.9 pTM=0.582 ipTM=0.248
2024-12-05 14:26:23,538 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=66.9 pTM=0.563 ipTM=0.188 tol=14.5
2024-12-05 14:26:32,025 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=67.8 pTM=0.583 ipTM=0.268 tol=9.02
2024-12-05 14:26:40,504 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=67.8 pTM=0.569 ipTM=0.193 tol=3.78
2024-12-05 14:26:48,973 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=67.2 pTM=0.571 ipTM=0.219 tol=1.71
2024-12-05 14:26:57,428 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.2 pTM=0.56 ipTM=0.174 tol=10.1
2024-12-05 14:27:05,880 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67 pTM=0.567 ipTM=0.208 tol=6.54
2024-12-05 14:27:14,344 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=67.5 pTM=0.565 ipTM=0.185 tol=8.55
2024-12-05 14:27:22,788 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=66.8 pTM=0.564 ipTM=0.197 tol=4.23
2024-12-05 14:27:31,248 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=67.2 pTM=0.562 ipTM=0.184 tol=1.95
2024-12-05 14:27:39,705 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=67.1 pTM=0.567 ipTM=0.199 tol=7.06
2024-12-05 14:27:48,162 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=67.2 pTM=0.559 ipTM=0.173 tol=4.59
2024-12-05 14:27:56,612 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=66.9 pTM=0.57 ipTM=0.21 tol=4.2
2024-12-05 14:28:05,072 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=67.6 pTM=0.569 ipTM=0.193 tol=7.66
2024-12-05 14:28:13,524 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=67.1 pTM=0.568 ipTM=0.197 tol=7.19
2024-12-05 14:28:21,987 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=67.4 pTM=0.565 ipTM=0.192 tol=3.52
2024-12-05 14:28:30,442 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=67.1 pTM=0.563 ipTM=0.178 tol=2.19
2024-12-05 14:28:38,907 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=66.9 pTM=0.563 ipTM=0.184 tol=2.15
2024-12-05 14:28:47,374 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=67.2 pTM=0.564 ipTM=0.181 tol=2.31
2024-12-05 14:28:55,840 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=67.1 pTM=0.565 ipTM=0.187 tol=2.5
2024-12-05 14:29:04,302 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=67.1 pTM=0.562 ipTM=0.175 tol=2.74
2024-12-05 14:29:12,757 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=66.8 pTM=0.561 ipTM=0.176 tol=1.84
2024-12-05 14:29:21,218 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=67.2 pTM=0.565 ipTM=0.184 tol=4.31
2024-12-05 14:29:29,672 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=67 pTM=0.56 ipTM=0.172 tol=1.72
2024-12-05 14:29:38,122 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=66.9 pTM=0.564 ipTM=0.186 tol=2.75
2024-12-05 14:29:46,565 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=67 pTM=0.559 ipTM=0.171 tol=6.02
2024-12-05 14:29:55,022 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=66.3 pTM=0.562 ipTM=0.176 tol=9.11
2024-12-05 14:30:03,490 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=66.7 pTM=0.559 ipTM=0.163 tol=12.4
2024-12-05 14:30:11,956 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=67.2 pTM=0.564 ipTM=0.183 tol=4.65
2024-12-05 14:30:20,410 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=67.2 pTM=0.557 ipTM=0.164 tol=6.7
2024-12-05 14:30:28,845 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=67 pTM=0.569 ipTM=0.196 tol=3.58
2024-12-05 14:30:28,846 alphafold2_multimer_v3_model_2_seed_000 took 262.3s (30 recycles)
2024-12-05 14:30:37,599 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.3 pTM=0.607 ipTM=0.331
2024-12-05 14:30:46,049 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=67.1 pTM=0.582 ipTM=0.197 tol=5.82
2024-12-05 14:30:54,503 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=66.3 pTM=0.578 ipTM=0.202 tol=3.76
2024-12-05 14:31:02,953 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=66.3 pTM=0.579 ipTM=0.194 tol=4.07
2024-12-05 14:31:11,401 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=65.9 pTM=0.571 ipTM=0.182 tol=4.58
2024-12-05 14:31:19,833 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=66.4 pTM=0.587 ipTM=0.229 tol=2.38
2024-12-05 14:31:28,304 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=65.9 pTM=0.564 ipTM=0.165 tol=2.07
2024-12-05 14:31:36,765 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=66.3 pTM=0.58 ipTM=0.207 tol=2.57
2024-12-05 14:31:45,223 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=66 pTM=0.567 ipTM=0.173 tol=5.29
2024-12-05 14:31:53,680 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=66.2 pTM=0.573 ipTM=0.188 tol=2.49
2024-12-05 14:32:02,138 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=66.2 pTM=0.572 ipTM=0.185 tol=3.68
2024-12-05 14:32:10,588 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=66.6 pTM=0.577 ipTM=0.205 tol=1.68
2024-12-05 14:32:19,050 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=66.1 pTM=0.57 ipTM=0.185 tol=4.43
2024-12-05 14:32:27,523 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=66.6 pTM=0.575 ipTM=0.194 tol=4.88
2024-12-05 14:32:35,974 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=66.2 pTM=0.567 ipTM=0.178 tol=3.19
2024-12-05 14:32:44,440 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=66.4 pTM=0.572 ipTM=0.19 tol=1.88
2024-12-05 14:32:52,885 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=66.1 pTM=0.575 ipTM=0.198 tol=2.57
2024-12-05 14:33:01,341 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=66.2 pTM=0.568 ipTM=0.181 tol=3.96
2024-12-05 14:33:09,803 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=66.9 pTM=0.587 ipTM=0.233 tol=3.3
2024-12-05 14:33:18,270 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=66.4 pTM=0.564 ipTM=0.167 tol=5.11
2024-12-05 14:33:26,728 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=66.3 pTM=0.575 ipTM=0.199 tol=5.61
2024-12-05 14:33:35,194 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=66.4 pTM=0.567 ipTM=0.175 tol=4.64
2024-12-05 14:33:43,655 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=66.7 pTM=0.578 ipTM=0.208 tol=5.09
2024-12-05 14:33:52,131 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.6 pTM=0.564 ipTM=0.167 tol=3.48
2024-12-05 14:34:00,587 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=66.8 pTM=0.583 ipTM=0.218 tol=4.42
2024-12-05 14:34:09,059 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=66.4 pTM=0.563 ipTM=0.165 tol=4.82
2024-12-05 14:34:17,512 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=66.6 pTM=0.575 ipTM=0.2 tol=5.99
2024-12-05 14:34:25,980 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.3 pTM=0.567 ipTM=0.179 tol=4.55
2024-12-05 14:34:34,437 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=66.8 pTM=0.579 ipTM=0.205 tol=2.88
2024-12-05 14:34:42,895 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=66.2 pTM=0.565 ipTM=0.171 tol=4.98
2024-12-05 14:34:51,342 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=66.9 pTM=0.586 ipTM=0.228 tol=3.95
2024-12-05 14:34:51,343 alphafold2_multimer_v3_model_3_seed_000 took 262.2s (30 recycles)
2024-12-05 14:35:00,118 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=64.8 pTM=0.552 ipTM=0.195
2024-12-05 14:35:08,590 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=64.7 pTM=0.572 ipTM=0.186 tol=18.1
2024-12-05 14:35:17,080 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=65.2 pTM=0.572 ipTM=0.186 tol=8.99
2024-12-05 14:35:25,538 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=65 pTM=0.575 ipTM=0.195 tol=5.51
2024-12-05 14:35:34,006 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=64.8 pTM=0.568 ipTM=0.178 tol=5.71
2024-12-05 14:35:42,463 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=64.7 pTM=0.578 ipTM=0.206 tol=3.03
2024-12-05 14:35:50,927 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=64.7 pTM=0.57 ipTM=0.186 tol=2.55
2024-12-05 14:35:59,386 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=65.1 pTM=0.578 ipTM=0.203 tol=3.23
2024-12-05 14:36:07,830 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=65.3 pTM=0.586 ipTM=0.229 tol=2.84
2024-12-05 14:36:16,273 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=64.8 pTM=0.58 ipTM=0.213 tol=1.17
2024-12-05 14:36:24,735 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=65.1 pTM=0.58 ipTM=0.205 tol=2.11
2024-12-05 14:36:33,189 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=64.8 pTM=0.582 ipTM=0.217 tol=1.69
2024-12-05 14:36:41,631 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=64.9 pTM=0.584 ipTM=0.22 tol=1.68
2024-12-05 14:36:50,070 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=64.8 pTM=0.577 ipTM=0.203 tol=2.02
2024-12-05 14:36:58,524 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=65.2 pTM=0.582 ipTM=0.207 tol=2.76
2024-12-05 14:37:06,970 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=64.8 pTM=0.577 ipTM=0.203 tol=2.08
2024-12-05 14:37:15,418 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=65 pTM=0.58 ipTM=0.205 tol=1.37
2024-12-05 14:37:23,876 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=65.1 pTM=0.575 ipTM=0.195 tol=1.58
2024-12-05 14:37:32,337 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=64.8 pTM=0.578 ipTM=0.201 tol=2.46
2024-12-05 14:37:40,784 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.1 pTM=0.579 ipTM=0.207 tol=1.79
2024-12-05 14:37:49,228 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=64.8 pTM=0.58 ipTM=0.208 tol=1.28
2024-12-05 14:37:57,655 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=64.6 pTM=0.573 ipTM=0.197 tol=2.58
2024-12-05 14:38:06,096 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=65 pTM=0.582 ipTM=0.214 tol=2.28
2024-12-05 14:38:14,541 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=64.9 pTM=0.577 ipTM=0.199 tol=1.66
2024-12-05 14:38:22,999 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=64.8 pTM=0.582 ipTM=0.216 tol=2.26
2024-12-05 14:38:31,446 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=64.9 pTM=0.578 ipTM=0.205 tol=2.22
2024-12-05 14:38:39,879 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=64.8 pTM=0.579 ipTM=0.21 tol=0.885
2024-12-05 14:38:48,327 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=65.1 pTM=0.579 ipTM=0.205 tol=1.05
2024-12-05 14:38:56,785 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=65.2 pTM=0.583 ipTM=0.213 tol=2.45
2024-12-05 14:39:05,246 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=65.1 pTM=0.578 ipTM=0.204 tol=3.54
2024-12-05 14:39:13,681 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=65.4 pTM=0.584 ipTM=0.218 tol=2.54
2024-12-05 14:39:13,682 alphafold2_multimer_v3_model_4_seed_000 took 262.0s (30 recycles)
2024-12-05 14:39:22,470 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.6 pTM=0.603 ipTM=0.341
2024-12-05 14:39:30,983 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=65.6 pTM=0.58 ipTM=0.224 tol=11.1
2024-12-05 14:39:39,509 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=65.4 pTM=0.569 ipTM=0.189 tol=5.77
2024-12-05 14:39:48,027 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66 pTM=0.583 ipTM=0.229 tol=4.85
2024-12-05 14:39:56,523 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=65.4 pTM=0.571 ipTM=0.193 tol=6.98
2024-12-05 14:40:05,033 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=65.6 pTM=0.585 ipTM=0.231 tol=4.98
2024-12-05 14:40:13,548 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=65.4 pTM=0.569 ipTM=0.192 tol=2.37
2024-12-05 14:40:22,063 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=66.1 pTM=0.586 ipTM=0.237 tol=5.4
2024-12-05 14:40:30,563 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=65.5 pTM=0.573 ipTM=0.196 tol=5.22
2024-12-05 14:40:39,069 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=66 pTM=0.592 ipTM=0.248 tol=3.12
2024-12-05 14:40:47,595 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=65.9 pTM=0.575 ipTM=0.212 tol=2.52
2024-12-05 14:40:56,105 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=66.3 pTM=0.595 ipTM=0.263 tol=5.28
2024-12-05 14:41:04,617 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=65.7 pTM=0.575 ipTM=0.205 tol=3.76
2024-12-05 14:41:13,128 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=66.1 pTM=0.585 ipTM=0.228 tol=4.12
2024-12-05 14:41:21,623 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=65.6 pTM=0.572 ipTM=0.195 tol=2.64
2024-12-05 14:41:30,135 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=65.8 pTM=0.579 ipTM=0.212 tol=3.38
2024-12-05 14:41:38,634 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=65.2 pTM=0.566 ipTM=0.176 tol=2.45
2024-12-05 14:41:47,130 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=66 pTM=0.59 ipTM=0.244 tol=4.91
2024-12-05 14:41:55,650 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=65.7 pTM=0.573 ipTM=0.202 tol=4.51
2024-12-05 14:42:04,156 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=66.4 pTM=0.6 ipTM=0.279 tol=2.39
2024-12-05 14:42:12,656 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=65.6 pTM=0.577 ipTM=0.21 tol=3.88
2024-12-05 14:42:21,156 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=66 pTM=0.587 ipTM=0.234 tol=3.61
2024-12-05 14:42:29,666 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=65.5 pTM=0.572 ipTM=0.192 tol=4.35
2024-12-05 14:42:38,170 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=66.1 pTM=0.589 ipTM=0.238 tol=4.67
2024-12-05 14:42:46,677 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=65.5 pTM=0.569 ipTM=0.185 tol=2.85
2024-12-05 14:42:55,169 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=65.9 pTM=0.588 ipTM=0.245 tol=2.67
2024-12-05 14:43:03,668 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=65.7 pTM=0.572 ipTM=0.2 tol=1.84
2024-12-05 14:43:12,172 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=66.1 pTM=0.588 ipTM=0.234 tol=1.93
2024-12-05 14:43:20,675 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=65.7 pTM=0.574 ipTM=0.198 tol=3.08
2024-12-05 14:43:29,164 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=66 pTM=0.587 ipTM=0.242 tol=4.62
2024-12-05 14:43:37,666 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=65.7 pTM=0.568 ipTM=0.184 tol=4.8
2024-12-05 14:43:37,666 alphafold2_multimer_v3_model_5_seed_000 took 263.7s (30 recycles)
2024-12-05 14:43:37,948 reranking models by 'multimer' metric
2024-12-05 14:43:43,752 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 14:44:46,608 Relaxation took 68.7s
2024-12-05 14:44:46,608 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=66.9 pTM=0.586 ipTM=0.228
2024-12-05 14:45:24,143 Relaxation took 37.5s
2024-12-05 14:45:24,143 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=65.4 pTM=0.584 ipTM=0.218
2024-12-05 14:46:02,213 Relaxation took 38.1s
2024-12-05 14:46:02,213 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=67 pTM=0.569 ipTM=0.196
2024-12-05 14:46:41,127 Relaxation took 38.9s
2024-12-05 14:46:41,127 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=65.7 pTM=0.568 ipTM=0.184
2024-12-05 14:47:22,406 Relaxation took 41.3s
2024-12-05 14:47:22,406 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=65.6 pTM=0.548 ipTM=0.153
2024-12-05 14:47:23,750 Done