2024-12-05 14:46:04,055 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 14:46:05,253 Running on GPU
2024-12-05 14:46:09,840 Found 6 citations for tools or databases
2024-12-05 14:46:09,841 Query 1/1: DZIP3_MED4 (length 1478)
2024-12-05 14:46:10,143 Sleeping for 7s. Reason: PENDING
2024-12-05 14:46:17,401 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:46:24,662 Sleeping for 8s. Reason: RUNNING
2024-12-05 14:46:32,921 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:46:39,178 Sleeping for 8s. Reason: RUNNING
2024-12-05 14:46:47,442 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:46:54,703 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:47:00,962 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:47:11,219 Sleeping for 9s. Reason: RUNNING
2024-12-05 14:47:20,477 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:47:36,515 Timeout while fetching status from MSA server. Retrying...
2024-12-05 14:47:42,542 Timeout while fetching status from MSA server. Retrying...
2024-12-05 14:47:48,571 Timeout while fetching status from MSA server. Retrying...
2024-12-05 14:47:54,598 Timeout while fetching status from MSA server. Retrying...
2024-12-05 14:48:00,625 Timeout while fetching status from MSA server. Retrying...
2024-12-05 14:48:03,898 Sleeping for 8s. Reason: RUNNING
2024-12-05 14:48:12,159 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:48:19,425 Sleeping for 9s. Reason: RUNNING
2024-12-05 14:48:28,691 Sleeping for 5s. Reason: RUNNING
2024-12-05 14:48:33,944 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:48:41,203 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:48:49,197 Sleeping for 6s. Reason: PENDING
2024-12-05 14:48:55,456 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:49:02,717 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:49:08,976 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:49:19,234 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:49:29,507 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:49:35,765 Sleeping for 6s. Reason: RUNNING
2024-12-05 14:49:42,027 Sleeping for 8s. Reason: RUNNING
2024-12-05 14:49:50,290 Sleeping for 10s. Reason: RUNNING
2024-12-05 14:50:00,549 Sleeping for 7s. Reason: RUNNING
2024-12-05 14:50:14,354 Setting max_seq=508, max_extra_seq=2048
2024-12-05 14:55:00,724 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=50.4 pTM=0.271 ipTM=0.182
2024-12-05 14:56:00,483 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=51.4 pTM=0.286 ipTM=0.185 tol=12
2024-12-05 14:57:00,374 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=52.8 pTM=0.28 ipTM=0.177 tol=13.3
2024-12-05 14:58:00,302 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=52.5 pTM=0.279 ipTM=0.176 tol=8.93
2024-12-05 14:59:00,281 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=52.5 pTM=0.277 ipTM=0.175 tol=6.78
2024-12-05 15:00:00,221 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=52.6 pTM=0.277 ipTM=0.174 tol=6.35
2024-12-05 15:01:00,134 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=52.9 pTM=0.277 ipTM=0.173 tol=5.01
2024-12-05 15:02:00,027 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=52.3 pTM=0.277 ipTM=0.17 tol=5.43
2024-12-05 15:02:59,918 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=52.5 pTM=0.276 ipTM=0.171 tol=4.95
2024-12-05 15:03:59,798 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=52.4 pTM=0.275 ipTM=0.171 tol=3.82
2024-12-05 15:04:59,720 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=52.7 pTM=0.275 ipTM=0.172 tol=4.69
2024-12-05 15:05:59,625 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=52.8 pTM=0.277 ipTM=0.172 tol=2.75
2024-12-05 15:06:59,531 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=53.2 pTM=0.275 ipTM=0.171 tol=3.98
2024-12-05 15:07:59,433 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=53.2 pTM=0.276 ipTM=0.171 tol=4.87
2024-12-05 15:08:59,341 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=53 pTM=0.275 ipTM=0.172 tol=4.12
2024-12-05 15:09:59,226 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=53 pTM=0.275 ipTM=0.175 tol=3.62
2024-12-05 15:10:59,137 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=52.9 pTM=0.276 ipTM=0.171 tol=4.29
2024-12-05 15:11:59,032 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=52.9 pTM=0.275 ipTM=0.173 tol=3.03
2024-12-05 15:12:58,933 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=52.9 pTM=0.277 ipTM=0.173 tol=4.76
2024-12-05 15:13:58,851 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=52.7 pTM=0.275 ipTM=0.174 tol=4.8
2024-12-05 15:14:58,751 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=52.8 pTM=0.276 ipTM=0.176 tol=2.87
2024-12-05 15:15:58,677 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=52.8 pTM=0.276 ipTM=0.174 tol=3.9
2024-12-05 15:16:58,590 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=52.9 pTM=0.275 ipTM=0.177 tol=4.34
2024-12-05 15:17:58,516 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=53.1 pTM=0.275 ipTM=0.175 tol=4.27
2024-12-05 15:18:58,442 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=53 pTM=0.274 ipTM=0.175 tol=5.14
2024-12-05 15:19:58,404 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=52.7 pTM=0.274 ipTM=0.177 tol=3.63
2024-12-05 15:20:58,368 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=52.8 pTM=0.274 ipTM=0.177 tol=4.18
2024-12-05 15:21:58,296 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=53 pTM=0.272 ipTM=0.178 tol=5.38
2024-12-05 15:22:58,194 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=52.8 pTM=0.274 ipTM=0.191 tol=5.27
2024-12-05 15:23:58,062 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=53.2 pTM=0.273 ipTM=0.223 tol=5.73
2024-12-05 15:24:57,932 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=53.3 pTM=0.275 ipTM=0.274 tol=5.7
2024-12-05 15:24:57,934 alphafold2_multimer_v3_model_1_seed_000 took 2062.9s (30 recycles)
2024-12-05 15:25:59,774 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=50.5 pTM=0.277 ipTM=0.18
2024-12-05 15:26:59,830 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=52.8 pTM=0.291 ipTM=0.182 tol=17.4
2024-12-05 15:27:59,864 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=53.2 pTM=0.292 ipTM=0.176 tol=11.3
2024-12-05 15:28:59,982 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=54.2 pTM=0.292 ipTM=0.181 tol=16.5
2024-12-05 15:30:00,058 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=53.4 pTM=0.286 ipTM=0.177 tol=14.3
2024-12-05 15:31:00,119 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=54.1 pTM=0.283 ipTM=0.18 tol=6.91
2024-12-05 15:32:00,128 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=54.6 pTM=0.289 ipTM=0.177 tol=5.45
2024-12-05 15:33:00,160 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=54 pTM=0.285 ipTM=0.175 tol=3.63
2024-12-05 15:34:00,193 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=54.4 pTM=0.286 ipTM=0.175 tol=5.39
2024-12-05 15:35:00,218 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=54.1 pTM=0.284 ipTM=0.173 tol=4.22
2024-12-05 15:36:00,256 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=54.4 pTM=0.284 ipTM=0.175 tol=5.64
2024-12-05 15:37:00,287 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=53.6 pTM=0.284 ipTM=0.176 tol=3.92
2024-12-05 15:38:00,314 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=54.8 pTM=0.286 ipTM=0.176 tol=4.21
2024-12-05 15:39:00,358 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=54.2 pTM=0.286 ipTM=0.175 tol=5.93
2024-12-05 15:40:00,423 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=54.3 pTM=0.286 ipTM=0.17 tol=4.79
2024-12-05 15:41:00,512 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=54.7 pTM=0.285 ipTM=0.171 tol=3.55
2024-12-05 15:42:00,595 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=54.3 pTM=0.285 ipTM=0.169 tol=3.75
2024-12-05 15:43:00,651 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=54.6 pTM=0.287 ipTM=0.171 tol=2.95
2024-12-05 15:44:00,685 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=54.5 pTM=0.292 ipTM=0.169 tol=3.25
2024-12-05 15:45:00,766 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=54 pTM=0.333 ipTM=0.174 tol=9.29
2024-12-05 15:46:00,788 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=53.8 pTM=0.313 ipTM=0.273 tol=26.1
2024-12-05 15:47:00,801 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=53.6 pTM=0.31 ipTM=0.259 tol=15.2
2024-12-05 15:48:00,778 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=54.5 pTM=0.309 ipTM=0.296 tol=8.8
2024-12-05 15:49:00,696 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=54.6 pTM=0.303 ipTM=0.32 tol=9.75
2024-12-05 15:50:00,604 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=55.1 pTM=0.31 ipTM=0.336 tol=8.23
2024-12-05 15:51:00,475 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.2 pTM=0.318 ipTM=0.352 tol=4.52
2024-12-05 15:52:00,336 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=55.4 pTM=0.317 ipTM=0.365 tol=5.79
2024-12-05 15:53:00,193 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=56 pTM=0.321 ipTM=0.376 tol=3.76
2024-12-05 15:54:00,058 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=56.1 pTM=0.318 ipTM=0.383 tol=3.83
2024-12-05 15:54:59,937 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=56.1 pTM=0.31 ipTM=0.385 tol=2.79
2024-12-05 15:55:59,802 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=56.1 pTM=0.318 ipTM=0.388 tol=2.24
2024-12-05 15:55:59,804 alphafold2_multimer_v3_model_2_seed_000 took 1860.0s (30 recycles)
2024-12-05 15:57:01,855 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=50.1 pTM=0.282 ipTM=0.181
2024-12-05 15:58:01,914 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=52.4 pTM=0.286 ipTM=0.479 tol=24.8
2024-12-05 15:59:01,896 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=51.9 pTM=0.328 ipTM=0.452 tol=22.5
2024-12-05 16:00:01,904 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=52.1 pTM=0.287 ipTM=0.458 tol=14.6
2024-12-05 16:01:01,869 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=52.4 pTM=0.285 ipTM=0.465 tol=9.5
2024-12-05 16:02:01,839 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=52.5 pTM=0.286 ipTM=0.468 tol=7.15
2024-12-05 16:03:01,759 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=52.5 pTM=0.29 ipTM=0.473 tol=9.12
2024-12-05 16:04:01,681 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=53.4 pTM=0.283 ipTM=0.463 tol=7.79
2024-12-05 16:05:01,568 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=53.4 pTM=0.286 ipTM=0.464 tol=5.97
2024-12-05 16:06:01,452 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=53.3 pTM=0.285 ipTM=0.46 tol=7.23
2024-12-05 16:07:01,372 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=53.4 pTM=0.283 ipTM=0.461 tol=3.87
2024-12-05 16:08:01,282 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=53.4 pTM=0.283 ipTM=0.463 tol=3.67
2024-12-05 16:09:01,163 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=53.5 pTM=0.283 ipTM=0.459 tol=4.31
2024-12-05 16:10:01,049 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=53.4 pTM=0.286 ipTM=0.465 tol=3.44
2024-12-05 16:11:00,922 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=53.3 pTM=0.284 ipTM=0.46 tol=3.15
2024-12-05 16:12:00,799 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=53.3 pTM=0.286 ipTM=0.463 tol=5.49
2024-12-05 16:13:00,679 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=53.2 pTM=0.281 ipTM=0.457 tol=4.91
2024-12-05 16:14:00,568 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=53.3 pTM=0.283 ipTM=0.456 tol=5.07
2024-12-05 16:15:00,456 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=53.6 pTM=0.28 ipTM=0.448 tol=5.2
2024-12-05 16:16:00,341 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=53.6 pTM=0.281 ipTM=0.453 tol=6.33
2024-12-05 16:17:00,237 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=53.3 pTM=0.281 ipTM=0.456 tol=4.16
2024-12-05 16:18:00,128 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=53.6 pTM=0.285 ipTM=0.466 tol=5.37
2024-12-05 16:19:00,042 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=53.6 pTM=0.282 ipTM=0.46 tol=5.11
2024-12-05 16:19:59,945 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=53.9 pTM=0.285 ipTM=0.466 tol=3.55
2024-12-05 16:20:59,838 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=53.7 pTM=0.282 ipTM=0.457 tol=4.93
2024-12-05 16:21:59,738 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=53.5 pTM=0.282 ipTM=0.461 tol=3.62
2024-12-05 16:22:59,654 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=53.8 pTM=0.283 ipTM=0.462 tol=3.42
2024-12-05 16:23:59,567 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=53.5 pTM=0.282 ipTM=0.455 tol=3.84
2024-12-05 16:24:59,488 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=53.7 pTM=0.285 ipTM=0.465 tol=3.59
2024-12-05 16:25:59,426 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=53.8 pTM=0.282 ipTM=0.459 tol=3.08
2024-12-05 16:26:59,327 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=53.5 pTM=0.283 ipTM=0.463 tol=4.74
2024-12-05 16:26:59,328 alphafold2_multimer_v3_model_3_seed_000 took 1857.6s (30 recycles)
2024-12-05 16:28:01,470 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=49.2 pTM=0.309 ipTM=0.318
2024-12-05 16:29:01,609 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=51 pTM=0.302 ipTM=0.368 tol=34.1
2024-12-05 16:30:01,752 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=50.5 pTM=0.279 ipTM=0.375 tol=14.2
2024-12-05 16:31:01,975 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=51 pTM=0.265 ipTM=0.406 tol=7.59
2024-12-05 16:32:02,185 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=50.8 pTM=0.264 ipTM=0.394 tol=6.4
2024-12-05 16:33:02,400 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=52.1 pTM=0.272 ipTM=0.396 tol=8.39
2024-12-05 16:34:02,698 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=51.5 pTM=0.265 ipTM=0.383 tol=9.33
2024-12-05 16:35:02,929 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=51.7 pTM=0.268 ipTM=0.393 tol=6.94
2024-12-05 16:36:03,153 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=51.8 pTM=0.274 ipTM=0.388 tol=8.19
2024-12-05 16:37:03,347 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=51.6 pTM=0.271 ipTM=0.382 tol=5.32
2024-12-05 16:38:03,537 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=52 pTM=0.273 ipTM=0.372 tol=5.35
2024-12-05 16:39:03,724 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=52.3 pTM=0.275 ipTM=0.373 tol=4.5
2024-12-05 16:40:03,898 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=52.4 pTM=0.275 ipTM=0.362 tol=3.61
2024-12-05 16:41:04,070 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=52 pTM=0.272 ipTM=0.368 tol=3.71
2024-12-05 16:42:04,260 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=51.5 pTM=0.274 ipTM=0.353 tol=3.91
2024-12-05 16:43:04,458 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=52.3 pTM=0.274 ipTM=0.371 tol=6.1
2024-12-05 16:44:04,626 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=52.1 pTM=0.275 ipTM=0.368 tol=5
2024-12-05 16:45:04,789 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=52.7 pTM=0.273 ipTM=0.385 tol=3.53
2024-12-05 16:46:04,961 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=52.5 pTM=0.276 ipTM=0.354 tol=4.67
2024-12-05 16:47:05,147 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=52.5 pTM=0.275 ipTM=0.369 tol=3.01
2024-12-05 16:48:05,331 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=52.3 pTM=0.278 ipTM=0.348 tol=4.79
2024-12-05 16:49:05,565 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=52.1 pTM=0.272 ipTM=0.357 tol=3.01
2024-12-05 16:50:05,775 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=52.5 pTM=0.275 ipTM=0.365 tol=5.25
2024-12-05 16:51:05,996 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=52.1 pTM=0.274 ipTM=0.358 tol=6.11
2024-12-05 16:52:06,253 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=52 pTM=0.273 ipTM=0.34 tol=4
2024-12-05 16:53:06,497 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=52.2 pTM=0.276 ipTM=0.361 tol=4.81
2024-12-05 16:54:06,740 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=52.1 pTM=0.274 ipTM=0.356 tol=5.11
2024-12-05 16:55:06,992 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=51.5 pTM=0.275 ipTM=0.33 tol=3.86
2024-12-05 16:56:07,255 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=52 pTM=0.275 ipTM=0.332 tol=3.46
2024-12-05 16:57:07,507 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=51.5 pTM=0.273 ipTM=0.332 tol=3.06
2024-12-05 16:58:07,735 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=51.9 pTM=0.275 ipTM=0.346 tol=4.09
2024-12-05 16:58:07,737 alphafold2_multimer_v3_model_4_seed_000 took 1866.5s (30 recycles)
2024-12-05 16:59:09,937 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=48.7 pTM=0.269 ipTM=0.168
2024-12-05 17:00:09,919 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=53.3 pTM=0.287 ipTM=0.441 tol=14.3
2024-12-05 17:01:09,841 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=53.3 pTM=0.288 ipTM=0.452 tol=11.9
2024-12-05 17:02:09,755 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=53.2 pTM=0.284 ipTM=0.47 tol=8.67
2024-12-05 17:03:09,663 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=53.3 pTM=0.283 ipTM=0.465 tol=6.55
2024-12-05 17:04:09,502 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=53.7 pTM=0.288 ipTM=0.474 tol=4.71
2024-12-05 17:05:09,326 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=53.9 pTM=0.29 ipTM=0.48 tol=4.71
2024-12-05 17:06:09,136 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=53.8 pTM=0.289 ipTM=0.472 tol=3.22
2024-12-05 17:07:08,967 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=53.9 pTM=0.289 ipTM=0.474 tol=3.36
2024-12-05 17:08:08,799 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=53.8 pTM=0.291 ipTM=0.473 tol=3.09
2024-12-05 17:09:08,654 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=53.8 pTM=0.288 ipTM=0.479 tol=3.1
2024-12-05 17:10:08,517 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=53.9 pTM=0.288 ipTM=0.48 tol=4.78
2024-12-05 17:11:08,370 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=53.6 pTM=0.288 ipTM=0.479 tol=4.84
2024-12-05 17:12:08,210 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=53.6 pTM=0.289 ipTM=0.481 tol=3.73
2024-12-05 17:13:08,029 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=53.7 pTM=0.289 ipTM=0.481 tol=4.41
2024-12-05 17:14:07,865 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=53.9 pTM=0.291 ipTM=0.484 tol=4.93
2024-12-05 17:15:07,709 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=53.6 pTM=0.29 ipTM=0.485 tol=4.28
2024-12-05 17:16:07,537 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=53.9 pTM=0.291 ipTM=0.484 tol=3.88
2024-12-05 17:17:07,361 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=53.8 pTM=0.29 ipTM=0.483 tol=4.05
2024-12-05 17:18:07,170 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=53.9 pTM=0.289 ipTM=0.48 tol=4.8
2024-12-05 17:19:06,978 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=53.7 pTM=0.289 ipTM=0.483 tol=3.39
2024-12-05 17:20:06,806 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=53.8 pTM=0.29 ipTM=0.488 tol=2.59
2024-12-05 17:21:06,635 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=54 pTM=0.29 ipTM=0.486 tol=2.47
2024-12-05 17:22:06,483 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=54.1 pTM=0.292 ipTM=0.493 tol=3.24
2024-12-05 17:23:06,329 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=53.5 pTM=0.291 ipTM=0.489 tol=3.89
2024-12-05 17:24:06,172 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=53.8 pTM=0.292 ipTM=0.49 tol=2.39
2024-12-05 17:25:05,992 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=53.6 pTM=0.292 ipTM=0.49 tol=2.01
2024-12-05 17:26:05,787 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=53.5 pTM=0.29 ipTM=0.483 tol=2.94
2024-12-05 17:27:05,586 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=53.6 pTM=0.29 ipTM=0.484 tol=2.19
2024-12-05 17:28:05,391 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=53.7 pTM=0.291 ipTM=0.486 tol=2.34
2024-12-05 17:29:05,213 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=53.4 pTM=0.288 ipTM=0.481 tol=3.18
2024-12-05 17:29:05,215 alphafold2_multimer_v3_model_5_seed_000 took 1855.4s (30 recycles)
2024-12-05 17:29:07,097 reranking models by 'multimer' metric
2024-12-05 17:29:12,315 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 17:34:39,086 Relaxation took 332.0s
2024-12-05 17:34:39,086 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=53.4 pTM=0.288 ipTM=0.481
2024-12-05 17:38:56,700 Relaxation took 257.6s
2024-12-05 17:38:56,700 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=53.5 pTM=0.283 ipTM=0.463
2024-12-05 17:42:08,040 Relaxation took 191.3s
2024-12-05 17:42:08,040 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=56.1 pTM=0.318 ipTM=0.388
2024-12-05 17:45:47,153 Relaxation took 219.1s
2024-12-05 17:45:47,153 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=51.9 pTM=0.275 ipTM=0.346
2024-12-05 17:49:13,130 Relaxation took 206.0s
2024-12-05 17:49:13,130 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=53.3 pTM=0.275 ipTM=0.274
2024-12-05 17:49:17,500 Done