2024-12-05 15:34:29,495 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 15:34:29,863 Running on GPU
2024-12-05 15:34:33,858 Found 6 citations for tools or databases
2024-12-05 15:34:33,858 Query 1/1: E4F1_PTCD3 (length 1473)
2024-12-05 15:34:34,157 Sleeping for 6s. Reason: PENDING
2024-12-05 15:34:40,422 Sleeping for 9s. Reason: RUNNING
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2024-12-05 15:37:41,393 Sleeping for 6s. Reason: RUNNING
2024-12-05 15:37:47,658 Sleeping for 6s. Reason: RUNNING
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2024-12-05 15:38:03,181 Sleeping for 10s. Reason: RUNNING
2024-12-05 15:38:13,446 Sleeping for 7s. Reason: RUNNING
2024-12-05 15:38:20,708 Sleeping for 8s. Reason: RUNNING
2024-12-05 15:38:30,265 Sleeping for 5s. Reason: PENDING
2024-12-05 15:38:35,519 Sleeping for 7s. Reason: RUNNING
2024-12-05 15:38:42,790 Sleeping for 9s. Reason: RUNNING
2024-12-05 15:38:52,053 Sleeping for 6s. Reason: RUNNING
2024-12-05 15:38:58,308 Sleeping for 7s. Reason: RUNNING
2024-12-05 15:39:05,565 Sleeping for 5s. Reason: RUNNING
2024-12-05 15:39:10,820 Sleeping for 7s. Reason: RUNNING
2024-12-05 15:39:18,089 Sleeping for 9s. Reason: RUNNING
2024-12-05 15:39:27,347 Sleeping for 8s. Reason: RUNNING
2024-12-05 15:39:35,602 Sleeping for 8s. Reason: RUNNING
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2024-12-05 15:39:51,117 Sleeping for 6s. Reason: RUNNING
2024-12-05 15:39:57,373 Sleeping for 6s. Reason: RUNNING
2024-12-05 15:40:03,632 Sleeping for 10s. Reason: RUNNING
2024-12-05 15:40:13,889 Sleeping for 9s. Reason: RUNNING
2024-12-05 15:40:23,142 Sleeping for 10s. Reason: RUNNING
2024-12-05 15:40:33,400 Sleeping for 8s. Reason: RUNNING
2024-12-05 15:40:41,656 Sleeping for 10s. Reason: RUNNING
2024-12-05 15:40:54,850 Setting max_seq=508, max_extra_seq=2048
2024-12-05 15:45:33,741 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=53.2 pTM=0.454 ipTM=0.185
2024-12-05 15:46:34,023 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=52.1 pTM=0.47 ipTM=0.275 tol=15.7
2024-12-05 15:47:34,579 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=52.2 pTM=0.464 ipTM=0.189 tol=8
2024-12-05 15:48:35,254 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.2 pTM=0.478 ipTM=0.543 tol=10.1
2024-12-05 15:49:36,018 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=53.8 pTM=0.49 ipTM=0.431 tol=10.7
2024-12-05 15:50:36,965 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=53.9 pTM=0.489 ipTM=0.434 tol=7.97
2024-12-05 15:51:37,848 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=54.1 pTM=0.489 ipTM=0.497 tol=5.12
2024-12-05 15:52:38,642 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=54.5 pTM=0.496 ipTM=0.526 tol=2.48
2024-12-05 15:53:39,439 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54.6 pTM=0.494 ipTM=0.546 tol=1.9
2024-12-05 15:54:40,142 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=54.6 pTM=0.492 ipTM=0.543 tol=1.46
2024-12-05 15:55:40,838 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=54.8 pTM=0.498 ipTM=0.552 tol=1.56
2024-12-05 15:56:41,525 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=54.8 pTM=0.5 ipTM=0.563 tol=1.46
2024-12-05 15:57:42,281 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=54.8 pTM=0.497 ipTM=0.553 tol=2.16
2024-12-05 15:58:43,003 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.7 pTM=0.497 ipTM=0.566 tol=1.95
2024-12-05 15:59:43,695 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.8 pTM=0.497 ipTM=0.559 tol=2.43
2024-12-05 16:00:44,354 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=54.7 pTM=0.497 ipTM=0.558 tol=1.86
2024-12-05 16:01:44,981 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=54.8 pTM=0.497 ipTM=0.555 tol=1.61
2024-12-05 16:02:45,604 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=54.7 pTM=0.495 ipTM=0.554 tol=1.26
2024-12-05 16:03:46,229 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54.6 pTM=0.498 ipTM=0.555 tol=1.45
2024-12-05 16:04:46,860 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.6 pTM=0.498 ipTM=0.563 tol=1.64
2024-12-05 16:05:47,565 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.9 pTM=0.5 ipTM=0.569 tol=2.33
2024-12-05 16:06:48,227 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=54.7 pTM=0.498 ipTM=0.558 tol=2.26
2024-12-05 16:07:48,888 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.8 pTM=0.498 ipTM=0.559 tol=1.51
2024-12-05 16:08:49,566 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54.8 pTM=0.497 ipTM=0.55 tol=2.26
2024-12-05 16:09:50,212 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=54.6 pTM=0.495 ipTM=0.548 tol=2.5
2024-12-05 16:10:50,843 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54.6 pTM=0.496 ipTM=0.552 tol=1.97
2024-12-05 16:11:51,532 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=54.8 pTM=0.497 ipTM=0.553 tol=1.44
2024-12-05 16:12:52,156 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=54.6 pTM=0.497 ipTM=0.552 tol=1.22
2024-12-05 16:13:52,803 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=54.8 pTM=0.5 ipTM=0.554 tol=2.11
2024-12-05 16:14:53,452 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54.7 pTM=0.496 ipTM=0.548 tol=2.27
2024-12-05 16:15:54,095 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=54.8 pTM=0.498 ipTM=0.557 tol=1.55
2024-12-05 16:15:54,096 alphafold2_multimer_v3_model_1_seed_000 took 2092.4s (30 recycles)
2024-12-05 16:16:56,591 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=51.9 pTM=0.455 ipTM=0.176
2024-12-05 16:17:57,442 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=52.1 pTM=0.465 ipTM=0.189 tol=13.7
2024-12-05 16:18:58,276 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=53 pTM=0.484 ipTM=0.494 tol=12.9
2024-12-05 16:19:59,090 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=53.1 pTM=0.479 ipTM=0.41 tol=6.79
2024-12-05 16:20:59,929 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=52.7 pTM=0.47 ipTM=0.322 tol=5.32
2024-12-05 16:22:00,766 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=52.8 pTM=0.47 ipTM=0.333 tol=3.8
2024-12-05 16:23:01,632 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=53.1 pTM=0.472 ipTM=0.333 tol=4.75
2024-12-05 16:24:02,496 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=53.2 pTM=0.471 ipTM=0.339 tol=5.26
2024-12-05 16:25:03,363 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=52.9 pTM=0.469 ipTM=0.312 tol=4.74
2024-12-05 16:26:04,257 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=53 pTM=0.466 ipTM=0.29 tol=5.06
2024-12-05 16:27:05,158 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=53.1 pTM=0.467 ipTM=0.31 tol=4.73
2024-12-05 16:28:06,033 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=53.2 pTM=0.468 ipTM=0.3 tol=3.6
2024-12-05 16:29:06,881 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=53.1 pTM=0.466 ipTM=0.28 tol=3.68
2024-12-05 16:30:07,717 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=53 pTM=0.467 ipTM=0.262 tol=3.42
2024-12-05 16:31:08,549 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=53.3 pTM=0.47 ipTM=0.296 tol=3.67
2024-12-05 16:32:09,396 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=53.4 pTM=0.471 ipTM=0.301 tol=3.3
2024-12-05 16:33:10,253 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=53.1 pTM=0.469 ipTM=0.283 tol=3.99
2024-12-05 16:34:11,157 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=52.8 pTM=0.468 ipTM=0.246 tol=5.83
2024-12-05 16:35:12,034 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=52.8 pTM=0.472 ipTM=0.292 tol=5.75
2024-12-05 16:36:12,941 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=52.8 pTM=0.47 ipTM=0.285 tol=4.14
2024-12-05 16:37:13,818 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=52.9 pTM=0.47 ipTM=0.28 tol=2.99
2024-12-05 16:38:14,655 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=53 pTM=0.47 ipTM=0.3 tol=4.15
2024-12-05 16:39:15,501 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=52.8 pTM=0.468 ipTM=0.271 tol=4.38
2024-12-05 16:40:16,361 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=52.7 pTM=0.469 ipTM=0.264 tol=4.32
2024-12-05 16:41:17,257 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=52.5 pTM=0.468 ipTM=0.259 tol=4.4
2024-12-05 16:42:18,152 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=52.9 pTM=0.467 ipTM=0.269 tol=4.61
2024-12-05 16:43:19,070 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=53 pTM=0.468 ipTM=0.28 tol=4.26
2024-12-05 16:44:19,945 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=52.6 pTM=0.468 ipTM=0.28 tol=4.24
2024-12-05 16:45:20,814 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=52 pTM=0.469 ipTM=0.265 tol=9.55
2024-12-05 16:46:21,668 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=52.9 pTM=0.47 ipTM=0.294 tol=6.03
2024-12-05 16:47:22,509 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=52.6 pTM=0.47 ipTM=0.298 tol=5.3
2024-12-05 16:47:22,511 alphafold2_multimer_v3_model_2_seed_000 took 1886.8s (30 recycles)
2024-12-05 16:48:25,149 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=51.2 pTM=0.454 ipTM=0.174
2024-12-05 16:49:26,111 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=51.9 pTM=0.482 ipTM=0.389 tol=15.8
2024-12-05 16:50:26,966 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=54.4 pTM=0.521 ipTM=0.601 tol=9.05
2024-12-05 16:51:27,832 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=54.9 pTM=0.526 ipTM=0.584 tol=5.78
2024-12-05 16:52:28,704 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=55.2 pTM=0.531 ipTM=0.57 tol=4.52
2024-12-05 16:53:29,579 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55 pTM=0.528 ipTM=0.556 tol=3.84
2024-12-05 16:54:30,501 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.3 pTM=0.533 ipTM=0.579 tol=4.44
2024-12-05 16:55:31,430 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.3 pTM=0.534 ipTM=0.582 tol=3.88
2024-12-05 16:56:32,387 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=55.4 pTM=0.534 ipTM=0.583 tol=3.49
2024-12-05 16:57:33,300 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.2 pTM=0.531 ipTM=0.557 tol=1.86
2024-12-05 16:58:34,178 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=55.3 pTM=0.532 ipTM=0.573 tol=1.79
2024-12-05 16:59:35,102 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.3 pTM=0.533 ipTM=0.574 tol=2.17
2024-12-05 17:00:36,019 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=55.2 pTM=0.531 ipTM=0.567 tol=1.79
2024-12-05 17:01:36,967 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.4 pTM=0.533 ipTM=0.586 tol=2.38
2024-12-05 17:02:37,983 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.3 pTM=0.533 ipTM=0.578 tol=5.11
2024-12-05 17:03:38,974 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55.2 pTM=0.532 ipTM=0.567 tol=2.31
2024-12-05 17:04:39,923 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.1 pTM=0.531 ipTM=0.562 tol=4.6
2024-12-05 17:05:40,822 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.2 pTM=0.531 ipTM=0.567 tol=2.83
2024-12-05 17:06:41,681 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=55.2 pTM=0.532 ipTM=0.576 tol=1.9
2024-12-05 17:07:42,604 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.3 pTM=0.533 ipTM=0.584 tol=1.95
2024-12-05 17:08:43,522 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=55.3 pTM=0.532 ipTM=0.576 tol=1.68
2024-12-05 17:09:44,444 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=55.1 pTM=0.53 ipTM=0.572 tol=1.71
2024-12-05 17:10:45,387 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=55.2 pTM=0.531 ipTM=0.574 tol=3.21
2024-12-05 17:11:46,316 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55.3 pTM=0.53 ipTM=0.567 tol=2.62
2024-12-05 17:12:47,180 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.4 pTM=0.532 ipTM=0.568 tol=1.23
2024-12-05 17:13:48,002 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.1 pTM=0.531 ipTM=0.563 tol=1.34
2024-12-05 17:14:48,828 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.1 pTM=0.53 ipTM=0.559 tol=1.54
2024-12-05 17:15:49,698 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55.3 pTM=0.531 ipTM=0.567 tol=1.53
2024-12-05 17:16:50,619 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55 pTM=0.528 ipTM=0.557 tol=1.54
2024-12-05 17:17:51,558 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.2 pTM=0.53 ipTM=0.559 tol=1.35
2024-12-05 17:18:52,492 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.2 pTM=0.532 ipTM=0.568 tol=1.68
2024-12-05 17:18:52,494 alphafold2_multimer_v3_model_3_seed_000 took 1888.3s (30 recycles)
2024-12-05 17:19:55,331 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=49.5 pTM=0.449 ipTM=0.233
2024-12-05 17:20:56,582 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=50.5 pTM=0.458 ipTM=0.192 tol=15.2
2024-12-05 17:21:57,735 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=51.9 pTM=0.477 ipTM=0.538 tol=14.6
2024-12-05 17:22:58,676 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=54 pTM=0.511 ipTM=0.604 tol=16.3
2024-12-05 17:23:59,521 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=54.8 pTM=0.523 ipTM=0.594 tol=9.39
2024-12-05 17:25:00,364 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=54.6 pTM=0.521 ipTM=0.545 tol=5.88
2024-12-05 17:26:01,311 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=54.8 pTM=0.525 ipTM=0.557 tol=4.43
2024-12-05 17:27:02,165 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=54.7 pTM=0.522 ipTM=0.555 tol=3.63
2024-12-05 17:28:03,030 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=54.9 pTM=0.524 ipTM=0.56 tol=3.74
2024-12-05 17:29:03,921 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=54.8 pTM=0.52 ipTM=0.544 tol=2.72
2024-12-05 17:30:04,778 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=55 pTM=0.523 ipTM=0.556 tol=3.68
2024-12-05 17:31:05,613 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=54.9 pTM=0.522 ipTM=0.55 tol=4.25
2024-12-05 17:32:06,466 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=55.1 pTM=0.523 ipTM=0.56 tol=4.75
2024-12-05 17:33:07,276 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=55 pTM=0.525 ipTM=0.563 tol=2.98
2024-12-05 17:34:08,043 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=55 pTM=0.523 ipTM=0.554 tol=2.64
2024-12-05 17:35:08,844 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55 pTM=0.524 ipTM=0.55 tol=2.18
2024-12-05 17:36:09,657 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=54.9 pTM=0.521 ipTM=0.543 tol=2.91
2024-12-05 17:37:10,463 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=55 pTM=0.521 ipTM=0.529 tol=3.4
2024-12-05 17:38:11,271 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=55.2 pTM=0.521 ipTM=0.54 tol=3.04
2024-12-05 17:39:12,079 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.1 pTM=0.523 ipTM=0.538 tol=2.87
2024-12-05 17:40:12,930 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55.1 pTM=0.524 ipTM=0.54 tol=2.42
2024-12-05 17:41:13,771 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=54.7 pTM=0.521 ipTM=0.536 tol=2.77
2024-12-05 17:42:14,606 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=55.3 pTM=0.523 ipTM=0.547 tol=2.75
2024-12-05 17:43:15,375 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55 pTM=0.521 ipTM=0.536 tol=2.52
2024-12-05 17:44:16,133 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=55 pTM=0.524 ipTM=0.542 tol=2.94
2024-12-05 17:45:16,885 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55 pTM=0.521 ipTM=0.53 tol=2.37
2024-12-05 17:46:17,653 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=54.9 pTM=0.52 ipTM=0.523 tol=2.04
2024-12-05 17:47:18,443 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.1 pTM=0.522 ipTM=0.529 tol=2.9
2024-12-05 17:48:19,246 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=54.8 pTM=0.524 ipTM=0.584 tol=2.73
2024-12-05 17:49:20,080 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55.1 pTM=0.522 ipTM=0.6 tol=1.88
2024-12-05 17:50:20,868 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55 pTM=0.526 ipTM=0.624 tol=1.7
2024-12-05 17:50:20,869 alphafold2_multimer_v3_model_4_seed_000 took 1886.7s (30 recycles)
2024-12-05 17:51:23,572 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=50.3 pTM=0.453 ipTM=0.282
2024-12-05 17:52:24,607 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=51.4 pTM=0.464 ipTM=0.459 tol=14.3
2024-12-05 17:53:25,647 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=52 pTM=0.477 ipTM=0.563 tol=7.26
2024-12-05 17:54:26,657 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=53.3 pTM=0.496 ipTM=0.6 tol=11
2024-12-05 17:55:27,632 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=54.1 pTM=0.506 ipTM=0.589 tol=7.86
2024-12-05 17:56:28,625 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=54.1 pTM=0.505 ipTM=0.581 tol=6.88
2024-12-05 17:57:29,613 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=54.2 pTM=0.504 ipTM=0.587 tol=2.98
2024-12-05 17:58:30,595 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=54.2 pTM=0.506 ipTM=0.591 tol=2.36
2024-12-05 17:59:31,605 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=54.1 pTM=0.504 ipTM=0.593 tol=5.34
2024-12-05 18:00:32,599 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=53.9 pTM=0.5 ipTM=0.576 tol=3.51
2024-12-05 18:01:33,577 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=54.1 pTM=0.499 ipTM=0.578 tol=4.4
2024-12-05 18:02:34,569 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=54.3 pTM=0.502 ipTM=0.592 tol=3.37
2024-12-05 18:03:35,566 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=54.2 pTM=0.5 ipTM=0.581 tol=4.35
2024-12-05 18:04:36,572 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=54.3 pTM=0.501 ipTM=0.604 tol=6.22
2024-12-05 18:05:37,538 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=54.1 pTM=0.502 ipTM=0.597 tol=4.12
2024-12-05 18:06:38,512 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=54.3 pTM=0.502 ipTM=0.591 tol=3.22
2024-12-05 18:07:39,433 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=54.1 pTM=0.502 ipTM=0.59 tol=3.12
2024-12-05 18:08:40,383 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=54.2 pTM=0.5 ipTM=0.592 tol=3.14
2024-12-05 18:09:41,358 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=54.1 pTM=0.499 ipTM=0.589 tol=2.31
2024-12-05 18:10:42,339 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=54 pTM=0.5 ipTM=0.579 tol=2.46
2024-12-05 18:11:43,330 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=54.2 pTM=0.502 ipTM=0.585 tol=2.46
2024-12-05 18:12:44,336 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=54.1 pTM=0.501 ipTM=0.576 tol=2.39
2024-12-05 18:13:45,318 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=53.9 pTM=0.499 ipTM=0.579 tol=8.34
2024-12-05 18:14:46,273 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=54 pTM=0.496 ipTM=0.569 tol=7.9
2024-12-05 18:15:47,193 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=53.9 pTM=0.498 ipTM=0.579 tol=3.53
2024-12-05 18:16:48,109 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=53.9 pTM=0.497 ipTM=0.591 tol=6.69
2024-12-05 18:17:49,019 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=54.1 pTM=0.5 ipTM=0.585 tol=5.86
2024-12-05 18:18:49,932 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=54.2 pTM=0.501 ipTM=0.58 tol=9.59
2024-12-05 18:19:50,848 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=54 pTM=0.499 ipTM=0.584 tol=5.69
2024-12-05 18:20:51,792 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=53.9 pTM=0.496 ipTM=0.568 tol=4.96
2024-12-05 18:21:52,720 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=53.9 pTM=0.497 ipTM=0.574 tol=4.47
2024-12-05 18:21:52,721 alphafold2_multimer_v3_model_5_seed_000 took 1890.2s (30 recycles)
2024-12-05 18:21:54,358 reranking models by 'multimer' metric
2024-12-05 18:21:58,504 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 18:26:08,521 Relaxation took 254.2s
2024-12-05 18:26:08,522 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55 pTM=0.526 ipTM=0.624
2024-12-05 18:29:16,231 Relaxation took 187.7s
2024-12-05 18:29:16,231 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.2 pTM=0.532 ipTM=0.568
2024-12-05 19:01:23,916 Relaxation took 1927.7s
2024-12-05 19:01:23,917 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=53.9 pTM=0.497 ipTM=0.574
2024-12-05 19:05:55,684 Relaxation took 271.8s
2024-12-05 19:05:55,685 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=54.8 pTM=0.498 ipTM=0.557
2024-12-05 19:09:59,320 Relaxation took 243.6s
2024-12-05 19:09:59,320 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=52.6 pTM=0.47 ipTM=0.298
2024-12-05 19:10:02,985 Done