2024-12-05 17:05:08,624 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 17:05:08,981 Running on GPU
2024-12-05 17:05:13,064 Found 6 citations for tools or databases
2024-12-05 17:05:13,064 Query 1/1: FBXL15_SKP1 (length 463)
2024-12-05 17:05:13,471 Sleeping for 8s. Reason: PENDING
2024-12-05 17:05:21,730 Sleeping for 6s. Reason: RUNNING
2024-12-05 17:05:27,988 Sleeping for 10s. Reason: RUNNING
2024-12-05 17:05:38,247 Sleeping for 8s. Reason: RUNNING
2024-12-05 17:05:46,503 Sleeping for 8s. Reason: RUNNING
2024-12-05 17:05:54,758 Sleeping for 5s. Reason: RUNNING
2024-12-05 17:06:01,481 Sleeping for 7s. Reason: PENDING
2024-12-05 17:06:08,743 Sleeping for 10s. Reason: PENDING
2024-12-05 17:06:19,003 Sleeping for 9s. Reason: RUNNING
2024-12-05 17:06:28,267 Sleeping for 6s. Reason: RUNNING
2024-12-05 17:06:34,542 Sleeping for 9s. Reason: RUNNING
2024-12-05 17:06:45,684 Setting max_seq=508, max_extra_seq=2048
2024-12-05 17:10:22,107 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=87.9 pTM=0.798 ipTM=0.887
2024-12-05 17:10:29,204 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=89.8 pTM=0.839 ipTM=0.898 tol=1.53
2024-12-05 17:10:36,294 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=89.9 pTM=0.838 ipTM=0.896 tol=0.347
2024-12-05 17:10:36,294 alphafold2_multimer_v3_model_1_seed_000 took 222.4s (2 recycles)
2024-12-05 17:10:43,560 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=88.3 pTM=0.814 ipTM=0.898
2024-12-05 17:10:50,660 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=89.5 pTM=0.833 ipTM=0.899 tol=2.76
2024-12-05 17:10:57,742 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=89.6 pTM=0.833 ipTM=0.896 tol=0.353
2024-12-05 17:10:57,743 alphafold2_multimer_v3_model_2_seed_000 took 21.3s (2 recycles)
2024-12-05 17:11:04,999 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=88.2 pTM=0.812 ipTM=0.896
2024-12-05 17:11:12,109 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=89.5 pTM=0.836 ipTM=0.902 tol=1.25
2024-12-05 17:11:19,219 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=89.8 pTM=0.846 ipTM=0.903 tol=1.74
2024-12-05 17:11:26,327 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=89.9 pTM=0.845 ipTM=0.904 tol=0.907
2024-12-05 17:11:33,437 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=90.1 pTM=0.846 ipTM=0.904 tol=0.247
2024-12-05 17:11:33,437 alphafold2_multimer_v3_model_3_seed_000 took 35.5s (4 recycles)
2024-12-05 17:11:40,673 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=87.6 pTM=0.8 ipTM=0.893
2024-12-05 17:11:47,785 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=89.8 pTM=0.841 ipTM=0.906 tol=0.98
2024-12-05 17:11:54,895 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=89.9 pTM=0.844 ipTM=0.906 tol=0.649
2024-12-05 17:12:02,000 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=89.9 pTM=0.842 ipTM=0.906 tol=0.212
2024-12-05 17:12:02,000 alphafold2_multimer_v3_model_4_seed_000 took 28.4s (3 recycles)
2024-12-05 17:12:09,247 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=88.2 pTM=0.819 ipTM=0.893
2024-12-05 17:12:16,336 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=89.4 pTM=0.832 ipTM=0.898 tol=0.718
2024-12-05 17:12:23,424 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=89.6 pTM=0.84 ipTM=0.9 tol=0.575
2024-12-05 17:12:30,506 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=89.6 pTM=0.837 ipTM=0.902 tol=0.152
2024-12-05 17:12:30,507 alphafold2_multimer_v3_model_5_seed_000 took 28.3s (3 recycles)
2024-12-05 17:12:30,691 reranking models by 'multimer' metric
2024-12-05 17:12:32,616 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 17:12:49,394 Relaxation took 18.7s
2024-12-05 17:12:49,394 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=89.9 pTM=0.842 ipTM=0.906
2024-12-05 17:13:01,805 Relaxation took 12.4s
2024-12-05 17:13:01,806 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=90.1 pTM=0.846 ipTM=0.904
2024-12-05 17:13:13,452 Relaxation took 11.6s
2024-12-05 17:13:13,453 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=89.6 pTM=0.837 ipTM=0.902
2024-12-05 17:13:25,741 Relaxation took 12.3s
2024-12-05 17:13:25,741 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=89.9 pTM=0.838 ipTM=0.896
2024-12-05 17:13:37,249 Relaxation took 11.5s
2024-12-05 17:13:37,249 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=89.6 pTM=0.833 ipTM=0.896
2024-12-05 17:13:38,366 Done