2024-12-05 17:55:43,910 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 17:55:44,208 Running on GPU
2024-12-05 17:55:48,144 Found 6 citations for tools or databases
2024-12-05 17:55:48,144 Query 1/1: FBXL2_YPEL3 (length 542)
2024-12-05 17:55:48,427 Sleeping for 6s. Reason: PENDING
2024-12-05 17:55:54,681 Sleeping for 8s. Reason: PENDING
2024-12-05 17:56:02,936 Sleeping for 5s. Reason: PENDING
2024-12-05 17:56:08,194 Sleeping for 9s. Reason: PENDING
2024-12-05 17:56:17,454 Sleeping for 9s. Reason: PENDING
2024-12-05 17:56:26,720 Sleeping for 5s. Reason: PENDING
2024-12-05 17:56:31,978 Sleeping for 7s. Reason: PENDING
2024-12-05 17:56:39,236 Sleeping for 10s. Reason: PENDING
2024-12-05 17:56:49,498 Sleeping for 6s. Reason: PENDING
2024-12-05 17:56:55,759 Sleeping for 8s. Reason: PENDING
2024-12-05 17:57:04,010 Sleeping for 5s. Reason: PENDING
2024-12-05 17:57:09,264 Sleeping for 9s. Reason: PENDING
2024-12-05 17:57:18,535 Sleeping for 9s. Reason: RUNNING
2024-12-05 17:57:27,793 Sleeping for 5s. Reason: RUNNING
2024-12-05 17:57:33,041 Sleeping for 7s. Reason: RUNNING
2024-12-05 17:57:40,297 Sleeping for 10s. Reason: RUNNING
2024-12-05 17:57:50,562 Sleeping for 9s. Reason: RUNNING
2024-12-05 17:57:59,817 Sleeping for 10s. Reason: RUNNING
2024-12-05 17:58:11,504 Sleeping for 5s. Reason: PENDING
2024-12-05 17:58:16,759 Sleeping for 5s. Reason: RUNNING
2024-12-05 17:58:22,011 Sleeping for 5s. Reason: RUNNING
2024-12-05 17:58:27,262 Sleeping for 8s. Reason: RUNNING
2024-12-05 17:58:35,531 Sleeping for 9s. Reason: RUNNING
2024-12-05 17:58:44,942 Sleeping for 8s. Reason: RUNNING
2024-12-05 17:58:53,211 Sleeping for 9s. Reason: RUNNING
2024-12-05 17:59:02,469 Sleeping for 5s. Reason: RUNNING
2024-12-05 17:59:07,748 Sleeping for 10s. Reason: RUNNING
2024-12-05 17:59:20,368 Setting max_seq=508, max_extra_seq=2048
2024-12-05 18:01:54,908 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=86.6 pTM=0.847 ipTM=0.859
2024-12-05 18:02:01,519 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=87.1 pTM=0.857 ipTM=0.895 tol=1.44
2024-12-05 18:02:08,115 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=87.3 pTM=0.86 ipTM=0.902 tol=0.719
2024-12-05 18:02:14,721 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=88.2 pTM=0.86 ipTM=0.904 tol=0.745
2024-12-05 18:02:21,339 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=87.4 pTM=0.863 ipTM=0.908 tol=3.15
2024-12-05 18:02:27,944 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=87.6 pTM=0.859 ipTM=0.906 tol=3.12
2024-12-05 18:02:34,581 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=87.4 pTM=0.865 ipTM=0.91 tol=3.81
2024-12-05 18:02:41,216 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=87.8 pTM=0.86 ipTM=0.91 tol=3.16
2024-12-05 18:02:47,845 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=87.5 pTM=0.86 ipTM=0.907 tol=0.657
2024-12-05 18:02:54,478 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=88.2 pTM=0.86 ipTM=0.909 tol=1.1
2024-12-05 18:03:01,116 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=87.6 pTM=0.861 ipTM=0.909 tol=1.91
2024-12-05 18:03:07,745 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=87.9 pTM=0.859 ipTM=0.91 tol=1.74
2024-12-05 18:03:14,385 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=87.6 pTM=0.864 ipTM=0.91 tol=3.47
2024-12-05 18:03:21,027 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=87.9 pTM=0.861 ipTM=0.91 tol=3.61
2024-12-05 18:03:27,679 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=87.6 pTM=0.864 ipTM=0.91 tol=1.58
2024-12-05 18:03:34,316 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=88 pTM=0.859 ipTM=0.908 tol=1.52
2024-12-05 18:03:40,953 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=87.5 pTM=0.86 ipTM=0.908 tol=1.19
2024-12-05 18:03:47,595 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=88 pTM=0.86 ipTM=0.909 tol=1.09
2024-12-05 18:03:54,259 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=87.5 pTM=0.866 ipTM=0.912 tol=3.33
2024-12-05 18:04:00,914 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=87.8 pTM=0.86 ipTM=0.91 tol=3.4
2024-12-05 18:04:07,564 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=87.5 pTM=0.862 ipTM=0.909 tol=1.55
2024-12-05 18:04:14,210 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=88.2 pTM=0.86 ipTM=0.908 tol=1.84
2024-12-05 18:04:20,878 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=87.6 pTM=0.863 ipTM=0.911 tol=1.38
2024-12-05 18:04:27,516 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=87.8 pTM=0.857 ipTM=0.906 tol=1.1
2024-12-05 18:04:34,180 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=87.6 pTM=0.866 ipTM=0.911 tol=4.11
2024-12-05 18:04:40,829 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=87.6 pTM=0.859 ipTM=0.908 tol=3.92
2024-12-05 18:04:47,477 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=87.4 pTM=0.862 ipTM=0.908 tol=2.65
2024-12-05 18:04:54,120 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=88.5 pTM=0.861 ipTM=0.907 tol=3.14
2024-12-05 18:05:00,765 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=87.6 pTM=0.859 ipTM=0.908 tol=0.984
2024-12-05 18:05:07,416 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=87.9 pTM=0.86 ipTM=0.908 tol=0.623
2024-12-05 18:05:14,074 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=87.4 pTM=0.863 ipTM=0.91 tol=2.24
2024-12-05 18:05:14,074 alphafold2_multimer_v3_model_1_seed_000 took 346.4s (30 recycles)
2024-12-05 18:05:20,860 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=85.1 pTM=0.826 ipTM=0.844
2024-12-05 18:05:27,514 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=86.7 pTM=0.85 ipTM=0.882 tol=1.56
2024-12-05 18:05:34,167 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=86.9 pTM=0.854 ipTM=0.884 tol=1.1
2024-12-05 18:05:40,795 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=87.4 pTM=0.853 ipTM=0.882 tol=0.781
2024-12-05 18:05:47,439 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=87.3 pTM=0.854 ipTM=0.884 tol=0.699
2024-12-05 18:05:54,060 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=87 pTM=0.85 ipTM=0.88 tol=0.21
2024-12-05 18:05:54,060 alphafold2_multimer_v3_model_2_seed_000 took 39.8s (5 recycles)
2024-12-05 18:06:00,861 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.6 pTM=0.85 ipTM=0.853
2024-12-05 18:06:07,495 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=87.8 pTM=0.857 ipTM=0.883 tol=1.84
2024-12-05 18:06:14,137 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=89.4 pTM=0.875 ipTM=0.883 tol=0.66
2024-12-05 18:06:20,789 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=90 pTM=0.881 ipTM=0.885 tol=0.529
2024-12-05 18:06:27,458 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=90.3 pTM=0.883 ipTM=0.887 tol=0.244
2024-12-05 18:06:27,459 alphafold2_multimer_v3_model_3_seed_000 took 33.2s (4 recycles)
2024-12-05 18:06:34,280 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=87.4 pTM=0.847 ipTM=0.859
2024-12-05 18:06:40,959 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=88.6 pTM=0.859 ipTM=0.902 tol=1.75
2024-12-05 18:06:47,631 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=89.1 pTM=0.867 ipTM=0.906 tol=0.631
2024-12-05 18:06:54,316 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=89.7 pTM=0.87 ipTM=0.91 tol=0.336
2024-12-05 18:06:54,317 alphafold2_multimer_v3_model_4_seed_000 took 26.7s (3 recycles)
2024-12-05 18:07:01,130 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=87.9 pTM=0.86 ipTM=0.873
2024-12-05 18:07:07,788 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=88.6 pTM=0.864 ipTM=0.899 tol=1.72
2024-12-05 18:07:14,441 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=89.1 pTM=0.87 ipTM=0.906 tol=0.712
2024-12-05 18:07:21,097 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=89.4 pTM=0.872 ipTM=0.908 tol=0.338
2024-12-05 18:07:21,097 alphafold2_multimer_v3_model_5_seed_000 took 26.6s (3 recycles)
2024-12-05 18:07:21,291 reranking models by 'multimer' metric
2024-12-05 18:07:24,281 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 18:07:42,689 Relaxation took 21.4s
2024-12-05 18:07:42,689 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=89.7 pTM=0.87 ipTM=0.91
2024-12-05 18:07:57,499 Relaxation took 14.8s
2024-12-05 18:07:57,499 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=89.4 pTM=0.872 ipTM=0.908
2024-12-05 18:08:11,514 Relaxation took 14.0s
2024-12-05 18:08:11,514 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=87.4 pTM=0.863 ipTM=0.91
2024-12-05 18:08:25,130 Relaxation took 13.6s
2024-12-05 18:08:25,130 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=90.3 pTM=0.883 ipTM=0.887
2024-12-05 18:08:41,701 Relaxation took 16.6s
2024-12-05 18:08:41,701 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87 pTM=0.85 ipTM=0.88
2024-12-05 18:08:42,802 Done