2024-12-05 18:32:32,878 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 18:32:33,184 Running on GPU
2024-12-05 18:32:37,151 Found 6 citations for tools or databases
2024-12-05 18:32:37,151 Query 1/1: FBXL4_TTC9C (length 792)
2024-12-05 18:32:37,473 Sleeping for 10s. Reason: PENDING
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2024-12-05 18:33:32,367 Sleeping for 8s. Reason: RUNNING
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2024-12-05 18:33:48,892 Sleeping for 6s. Reason: RUNNING
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2024-12-05 18:34:03,423 Sleeping for 6s. Reason: RUNNING
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2024-12-05 18:34:53,035 Sleeping for 9s. Reason: RUNNING
2024-12-05 18:35:07,707 Sleeping for 7s. Reason: PENDING
2024-12-05 18:35:14,982 Sleeping for 10s. Reason: RUNNING
2024-12-05 18:35:25,247 Sleeping for 8s. Reason: RUNNING
2024-12-05 18:35:33,518 Sleeping for 8s. Reason: RUNNING
2024-12-05 18:35:41,795 Sleeping for 9s. Reason: RUNNING
2024-12-05 18:35:51,070 Sleeping for 7s. Reason: RUNNING
2024-12-05 18:35:58,345 Sleeping for 5s. Reason: RUNNING
2024-12-05 18:36:03,614 Sleeping for 7s. Reason: RUNNING
2024-12-05 18:36:10,891 Sleeping for 7s. Reason: RUNNING
2024-12-05 18:36:18,156 Sleeping for 5s. Reason: RUNNING
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2024-12-05 18:36:31,695 Sleeping for 9s. Reason: RUNNING
2024-12-05 18:36:42,897 Setting max_seq=508, max_extra_seq=2048
2024-12-05 18:38:47,728 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=83.1 pTM=0.745 ipTM=0.422
2024-12-05 18:38:59,212 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.2 pTM=0.732 ipTM=0.344 tol=1.8
2024-12-05 18:39:10,718 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.5 pTM=0.733 ipTM=0.37 tol=0.827
2024-12-05 18:39:22,255 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.7 pTM=0.733 ipTM=0.36 tol=0.634
2024-12-05 18:39:33,808 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.8 pTM=0.739 ipTM=0.392 tol=0.563
2024-12-05 18:39:45,384 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=83.6 pTM=0.732 ipTM=0.353 tol=0.756
2024-12-05 18:39:56,979 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=83.1 pTM=0.729 ipTM=0.333 tol=0.769
2024-12-05 18:40:08,558 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=82.8 pTM=0.723 ipTM=0.325 tol=0.539
2024-12-05 18:40:20,155 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=82.9 pTM=0.726 ipTM=0.319 tol=0.507
2024-12-05 18:40:31,775 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=82.9 pTM=0.724 ipTM=0.332 tol=0.463
2024-12-05 18:40:31,776 alphafold2_multimer_v3_model_1_seed_000 took 223.9s (9 recycles)
2024-12-05 18:40:43,747 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=82.6 pTM=0.742 ipTM=0.4
2024-12-05 18:40:55,358 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.4 pTM=0.743 ipTM=0.395 tol=1.89
2024-12-05 18:41:06,982 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=83.5 pTM=0.737 ipTM=0.375 tol=2.45
2024-12-05 18:41:18,580 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=83.3 pTM=0.738 ipTM=0.371 tol=1.96
2024-12-05 18:41:30,184 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=83.5 pTM=0.742 ipTM=0.394 tol=0.584
2024-12-05 18:41:41,791 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=83.5 pTM=0.74 ipTM=0.388 tol=0.348
2024-12-05 18:41:41,792 alphafold2_multimer_v3_model_2_seed_000 took 69.6s (5 recycles)
2024-12-05 18:41:53,759 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81.6 pTM=0.719 ipTM=0.333
2024-12-05 18:42:05,311 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=81.4 pTM=0.715 ipTM=0.327 tol=5.88
2024-12-05 18:42:16,871 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.4 pTM=0.716 ipTM=0.316 tol=1.4
2024-12-05 18:42:28,417 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.6 pTM=0.71 ipTM=0.286 tol=0.933
2024-12-05 18:42:39,979 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.6 pTM=0.711 ipTM=0.296 tol=1.19
2024-12-05 18:42:51,554 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=81.5 pTM=0.708 ipTM=0.275 tol=0.938
2024-12-05 18:43:03,157 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=82.2 pTM=0.739 ipTM=0.401 tol=1.32
2024-12-05 18:43:14,736 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.8 pTM=0.714 ipTM=0.306 tol=1.72
2024-12-05 18:43:26,330 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=82.2 pTM=0.742 ipTM=0.417 tol=1.37
2024-12-05 18:43:37,892 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.9 pTM=0.717 ipTM=0.317 tol=1.39
2024-12-05 18:43:49,494 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=82.1 pTM=0.737 ipTM=0.396 tol=1.43
2024-12-05 18:44:01,066 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.5 pTM=0.715 ipTM=0.321 tol=1.6
2024-12-05 18:44:12,631 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=81.9 pTM=0.738 ipTM=0.408 tol=1.47
2024-12-05 18:44:24,214 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=81.6 pTM=0.716 ipTM=0.309 tol=1.53
2024-12-05 18:44:35,799 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=82.2 pTM=0.747 ipTM=0.44 tol=1.44
2024-12-05 18:44:47,387 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=81.9 pTM=0.72 ipTM=0.323 tol=1.4
2024-12-05 18:44:58,965 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=81.9 pTM=0.727 ipTM=0.353 tol=1.3
2024-12-05 18:45:10,554 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=81.8 pTM=0.714 ipTM=0.315 tol=1.38
2024-12-05 18:45:22,128 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=82.2 pTM=0.742 ipTM=0.421 tol=1.3
2024-12-05 18:45:33,715 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=82.1 pTM=0.722 ipTM=0.341 tol=1.32
2024-12-05 18:45:45,304 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=82.2 pTM=0.735 ipTM=0.39 tol=0.965
2024-12-05 18:45:56,875 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=82 pTM=0.718 ipTM=0.332 tol=1.61
2024-12-05 18:46:08,458 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=81.9 pTM=0.721 ipTM=0.332 tol=1.16
2024-12-05 18:46:20,015 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=81.4 pTM=0.703 ipTM=0.26 tol=1.59
2024-12-05 18:46:31,610 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=82 pTM=0.733 ipTM=0.376 tol=1.92
2024-12-05 18:46:43,175 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=81.9 pTM=0.72 ipTM=0.324 tol=1.62
2024-12-05 18:46:54,760 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=81.9 pTM=0.727 ipTM=0.355 tol=1.19
2024-12-05 18:47:06,276 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=81.2 pTM=0.705 ipTM=0.28 tol=1.7
2024-12-05 18:47:17,874 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=81.2 pTM=0.698 ipTM=0.227 tol=3.92
2024-12-05 18:47:29,461 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=82 pTM=0.722 ipTM=0.325 tol=4.8
2024-12-05 18:47:41,035 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=81.6 pTM=0.714 ipTM=0.302 tol=0.835
2024-12-05 18:47:41,035 alphafold2_multimer_v3_model_3_seed_000 took 358.8s (30 recycles)
2024-12-05 18:47:53,007 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=80.6 pTM=0.713 ipTM=0.29
2024-12-05 18:48:04,606 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=82.3 pTM=0.716 ipTM=0.296 tol=2.4
2024-12-05 18:48:16,192 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.7 pTM=0.718 ipTM=0.309 tol=0.99
2024-12-05 18:48:27,787 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=82.9 pTM=0.717 ipTM=0.294 tol=0.5
2024-12-05 18:48:39,368 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.9 pTM=0.723 ipTM=0.324 tol=0.382
2024-12-05 18:48:39,369 alphafold2_multimer_v3_model_4_seed_000 took 57.9s (4 recycles)
2024-12-05 18:48:51,336 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=80.2 pTM=0.701 ipTM=0.262
2024-12-05 18:49:02,926 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.2 pTM=0.708 ipTM=0.263 tol=5.56
2024-12-05 18:49:14,518 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=81.4 pTM=0.709 ipTM=0.272 tol=3.13
2024-12-05 18:49:26,105 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=81.9 pTM=0.711 ipTM=0.277 tol=2.24
2024-12-05 18:49:37,707 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=81.8 pTM=0.711 ipTM=0.294 tol=0.947
2024-12-05 18:49:49,326 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=81.8 pTM=0.71 ipTM=0.255 tol=4.41
2024-12-05 18:50:00,952 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=82.2 pTM=0.716 ipTM=0.299 tol=4.28
2024-12-05 18:50:12,570 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=82.1 pTM=0.712 ipTM=0.276 tol=1.96
2024-12-05 18:50:24,194 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=82.3 pTM=0.718 ipTM=0.327 tol=1.64
2024-12-05 18:50:35,819 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=82.1 pTM=0.712 ipTM=0.283 tol=2.07
2024-12-05 18:50:47,445 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=82.2 pTM=0.716 ipTM=0.321 tol=1.72
2024-12-05 18:50:59,065 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=82.1 pTM=0.713 ipTM=0.296 tol=1.65
2024-12-05 18:51:10,684 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=82 pTM=0.713 ipTM=0.301 tol=1.92
2024-12-05 18:51:22,307 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=82 pTM=0.71 ipTM=0.275 tol=1.98
2024-12-05 18:51:33,919 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=82.1 pTM=0.713 ipTM=0.284 tol=2.11
2024-12-05 18:51:45,553 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=82.2 pTM=0.712 ipTM=0.284 tol=1.4
2024-12-05 18:51:57,139 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=82.1 pTM=0.713 ipTM=0.293 tol=1.75
2024-12-05 18:52:08,766 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=82.2 pTM=0.715 ipTM=0.312 tol=1.49
2024-12-05 18:52:20,381 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=82.2 pTM=0.717 ipTM=0.314 tol=1.63
2024-12-05 18:52:31,988 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=82.3 pTM=0.717 ipTM=0.31 tol=0.832
2024-12-05 18:52:43,600 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=82.4 pTM=0.723 ipTM=0.327 tol=1.41
2024-12-05 18:52:55,222 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=82.5 pTM=0.723 ipTM=0.304 tol=1.32
2024-12-05 18:53:06,841 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=82.4 pTM=0.724 ipTM=0.326 tol=1.34
2024-12-05 18:53:18,437 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=82.3 pTM=0.717 ipTM=0.293 tol=1.91
2024-12-05 18:53:30,025 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=82.2 pTM=0.72 ipTM=0.313 tol=1.23
2024-12-05 18:53:41,644 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=82.3 pTM=0.72 ipTM=0.304 tol=1.45
2024-12-05 18:53:53,256 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=82.3 pTM=0.723 ipTM=0.328 tol=1.39
2024-12-05 18:54:04,875 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=82.2 pTM=0.719 ipTM=0.293 tol=0.773
2024-12-05 18:54:16,478 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=82.4 pTM=0.723 ipTM=0.321 tol=1.99
2024-12-05 18:54:28,097 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=82.7 pTM=0.725 ipTM=0.327 tol=1.6
2024-12-05 18:54:39,697 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=82.5 pTM=0.728 ipTM=0.34 tol=0.677
2024-12-05 18:54:39,698 alphafold2_multimer_v3_model_5_seed_000 took 359.9s (30 recycles)
2024-12-05 18:54:40,094 reranking models by 'multimer' metric
2024-12-05 18:54:41,030 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 18:55:04,864 Relaxation took 24.8s
2024-12-05 18:55:04,864 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=83.5 pTM=0.74 ipTM=0.388
2024-12-05 18:55:28,540 Relaxation took 23.7s
2024-12-05 18:55:28,540 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=82.5 pTM=0.728 ipTM=0.34
2024-12-05 18:55:47,113 Relaxation took 18.6s
2024-12-05 18:55:47,113 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.9 pTM=0.724 ipTM=0.332
2024-12-05 18:56:07,152 Relaxation took 20.0s
2024-12-05 18:56:07,152 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.9 pTM=0.723 ipTM=0.324
2024-12-05 18:56:38,859 Relaxation took 31.7s
2024-12-05 18:56:38,859 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.6 pTM=0.714 ipTM=0.302
2024-12-05 18:56:40,264 Done