2024-12-05 18:59:57,917 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-05 18:59:58,244 Running on GPU
2024-12-05 19:00:02,066 Found 6 citations for tools or databases
2024-12-05 19:00:02,066 Query 1/1: FBXL8_SKP1 (length 537)
2024-12-05 19:00:02,363 Sleeping for 5s. Reason: PENDING
2024-12-05 19:00:07,620 Sleeping for 6s. Reason: RUNNING
2024-12-05 19:00:13,870 Sleeping for 6s. Reason: RUNNING
2024-12-05 19:00:20,136 Sleeping for 10s. Reason: RUNNING
2024-12-05 19:00:30,399 Sleeping for 8s. Reason: RUNNING
2024-12-05 19:00:38,674 Sleeping for 6s. Reason: RUNNING
2024-12-05 19:00:44,929 Sleeping for 7s. Reason: RUNNING
2024-12-05 19:00:52,189 Sleeping for 6s. Reason: RUNNING
2024-12-05 19:00:58,446 Sleeping for 6s. Reason: RUNNING
2024-12-05 19:01:04,702 Sleeping for 9s. Reason: RUNNING
2024-12-05 19:01:15,511 Sleeping for 8s. Reason: PENDING
2024-12-05 19:01:23,781 Sleeping for 8s. Reason: RUNNING
2024-12-05 19:01:32,043 Sleeping for 7s. Reason: RUNNING
2024-12-05 19:01:39,295 Sleeping for 10s. Reason: RUNNING
2024-12-05 19:01:49,565 Sleeping for 10s. Reason: RUNNING
2024-12-05 19:02:01,529 Setting max_seq=508, max_extra_seq=2048
2024-12-05 19:04:54,726 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=87.2 pTM=0.846 ipTM=0.871
2024-12-05 19:05:00,786 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=89.8 pTM=0.86 ipTM=0.888 tol=0.687
2024-12-05 19:05:06,815 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=89.2 pTM=0.856 ipTM=0.88 tol=0.373
2024-12-05 19:05:06,815 alphafold2_multimer_v3_model_1_seed_000 took 179.5s (2 recycles)
2024-12-05 19:05:13,042 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=87.6 pTM=0.838 ipTM=0.879
2024-12-05 19:05:19,096 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=88.7 pTM=0.838 ipTM=0.875 tol=0.82
2024-12-05 19:05:25,138 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=88.7 pTM=0.836 ipTM=0.871 tol=0.599
2024-12-05 19:05:31,185 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=88.6 pTM=0.828 ipTM=0.873 tol=0.351
2024-12-05 19:05:31,186 alphafold2_multimer_v3_model_2_seed_000 took 24.2s (3 recycles)
2024-12-05 19:05:37,429 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=88.2 pTM=0.839 ipTM=0.89
2024-12-05 19:05:43,534 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=90.2 pTM=0.865 ipTM=0.896 tol=0.734
2024-12-05 19:05:49,620 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=89.7 pTM=0.863 ipTM=0.896 tol=0.447
2024-12-05 19:05:49,620 alphafold2_multimer_v3_model_3_seed_000 took 18.2s (2 recycles)
2024-12-05 19:05:55,871 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=87.5 pTM=0.841 ipTM=0.87
2024-12-05 19:06:01,935 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=88 pTM=0.836 ipTM=0.876 tol=1.08
2024-12-05 19:06:07,994 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=88.4 pTM=0.848 ipTM=0.875 tol=0.59
2024-12-05 19:06:14,049 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=88.5 pTM=0.843 ipTM=0.877 tol=0.268
2024-12-05 19:06:14,049 alphafold2_multimer_v3_model_4_seed_000 took 24.2s (3 recycles)
2024-12-05 19:06:20,303 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=86.7 pTM=0.827 ipTM=0.88
2024-12-05 19:06:26,393 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=89.4 pTM=0.851 ipTM=0.891 tol=0.67
2024-12-05 19:06:32,483 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=89.2 pTM=0.856 ipTM=0.889 tol=0.408
2024-12-05 19:06:32,483 alphafold2_multimer_v3_model_5_seed_000 took 18.2s (2 recycles)
2024-12-05 19:06:32,679 reranking models by 'multimer' metric
2024-12-05 19:06:35,555 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-05 19:06:52,129 Relaxation took 19.4s
2024-12-05 19:06:52,129 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=89.7 pTM=0.863 ipTM=0.896
2024-12-05 19:07:04,693 Relaxation took 12.6s
2024-12-05 19:07:04,693 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=89.2 pTM=0.856 ipTM=0.889
2024-12-05 19:07:16,272 Relaxation took 11.6s
2024-12-05 19:07:16,272 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=89.2 pTM=0.856 ipTM=0.88
2024-12-05 19:07:30,065 Relaxation took 13.8s
2024-12-05 19:07:30,065 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=88.5 pTM=0.843 ipTM=0.877
2024-12-05 19:07:41,951 Relaxation took 11.9s
2024-12-05 19:07:41,951 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=88.6 pTM=0.828 ipTM=0.873
2024-12-05 19:07:43,017 Done