2024-12-06 00:26:02,848 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 00:26:03,161 Running on GPU
2024-12-06 00:26:06,767 Found 6 citations for tools or databases
2024-12-06 00:26:06,768 Query 1/1: FBXO2_LYRM4 (length 387)
2024-12-06 00:26:07,043 Sleeping for 9s. Reason: PENDING
2024-12-06 00:26:16,300 Sleeping for 6s. Reason: RUNNING
2024-12-06 00:26:22,566 Sleeping for 9s. Reason: RUNNING
2024-12-06 00:26:31,823 Sleeping for 9s. Reason: RUNNING
2024-12-06 00:26:41,084 Sleeping for 10s. Reason: RUNNING
2024-12-06 00:26:51,342 Sleeping for 5s. Reason: RUNNING
2024-12-06 00:26:56,597 Sleeping for 8s. Reason: RUNNING
2024-12-06 00:27:06,200 Sleeping for 10s. Reason: PENDING
2024-12-06 00:27:16,466 Sleeping for 8s. Reason: RUNNING
2024-12-06 00:27:24,728 Sleeping for 9s. Reason: RUNNING
2024-12-06 00:27:33,984 Sleeping for 10s. Reason: RUNNING
2024-12-06 00:27:44,249 Sleeping for 5s. Reason: RUNNING
2024-12-06 00:27:50,977 Setting max_seq=508, max_extra_seq=2048
2024-12-06 00:30:34,349 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=70.8 pTM=0.621 ipTM=0.159
2024-12-06 00:30:38,105 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.6 pTM=0.627 ipTM=0.176 tol=3.32
2024-12-06 00:30:41,865 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=72.5 pTM=0.634 ipTM=0.178 tol=1.96
2024-12-06 00:30:45,616 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=71.6 pTM=0.622 ipTM=0.163 tol=1.14
2024-12-06 00:30:49,370 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=72.2 pTM=0.623 ipTM=0.157 tol=1.08
2024-12-06 00:30:53,125 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=72.5 pTM=0.622 ipTM=0.15 tol=0.676
2024-12-06 00:30:56,880 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=71.9 pTM=0.619 ipTM=0.146 tol=1.39
2024-12-06 00:31:00,635 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=71.6 pTM=0.617 ipTM=0.142 tol=0.693
2024-12-06 00:31:04,392 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=72.1 pTM=0.618 ipTM=0.145 tol=1.99
2024-12-06 00:31:08,152 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=71.4 pTM=0.616 ipTM=0.148 tol=1.18
2024-12-06 00:31:11,909 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=73 pTM=0.622 ipTM=0.168 tol=1.47
2024-12-06 00:31:15,665 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=71.9 pTM=0.616 ipTM=0.153 tol=1.03
2024-12-06 00:31:19,422 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=72.4 pTM=0.623 ipTM=0.166 tol=0.965
2024-12-06 00:31:23,181 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=73.4 pTM=0.619 ipTM=0.158 tol=1.05
2024-12-06 00:31:26,936 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=72.4 pTM=0.616 ipTM=0.154 tol=1.4
2024-12-06 00:31:30,695 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=73.2 pTM=0.614 ipTM=0.156 tol=1.13
2024-12-06 00:31:34,452 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=72.9 pTM=0.614 ipTM=0.159 tol=0.633
2024-12-06 00:31:38,210 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=73.9 pTM=0.614 ipTM=0.157 tol=0.827
2024-12-06 00:31:41,971 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=73.8 pTM=0.615 ipTM=0.166 tol=1.2
2024-12-06 00:31:45,734 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=74.5 pTM=0.616 ipTM=0.157 tol=1.21
2024-12-06 00:31:49,499 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=74.7 pTM=0.617 ipTM=0.174 tol=1.3
2024-12-06 00:31:53,271 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=75.5 pTM=0.622 ipTM=0.152 tol=0.712
2024-12-06 00:31:57,036 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=74.5 pTM=0.618 ipTM=0.167 tol=1.27
2024-12-06 00:32:00,799 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=74.4 pTM=0.615 ipTM=0.156 tol=0.523
2024-12-06 00:32:04,564 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=75 pTM=0.618 ipTM=0.174 tol=0.637
2024-12-06 00:32:08,319 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=74.9 pTM=0.62 ipTM=0.161 tol=0.522
2024-12-06 00:32:12,080 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=74.9 pTM=0.617 ipTM=0.167 tol=1
2024-12-06 00:32:15,844 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=75.4 pTM=0.617 ipTM=0.149 tol=0.914
2024-12-06 00:32:19,606 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=75.1 pTM=0.615 ipTM=0.171 tol=0.698
2024-12-06 00:32:23,366 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=74.6 pTM=0.614 ipTM=0.16 tol=0.955
2024-12-06 00:32:27,126 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=74.4 pTM=0.616 ipTM=0.17 tol=0.868
2024-12-06 00:32:27,127 alphafold2_multimer_v3_model_1_seed_000 took 269.9s (30 recycles)
2024-12-06 00:32:31,007 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.9 pTM=0.61 ipTM=0.178
2024-12-06 00:32:34,767 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.9 pTM=0.631 ipTM=0.201 tol=2.4
2024-12-06 00:32:38,529 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.3 pTM=0.636 ipTM=0.2 tol=1.95
2024-12-06 00:32:42,286 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.2 pTM=0.637 ipTM=0.207 tol=0.94
2024-12-06 00:32:46,040 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.1 pTM=0.636 ipTM=0.197 tol=0.579
2024-12-06 00:32:49,794 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75.1 pTM=0.642 ipTM=0.229 tol=1.37
2024-12-06 00:32:53,549 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.4 pTM=0.636 ipTM=0.208 tol=0.603
2024-12-06 00:32:57,299 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74 pTM=0.637 ipTM=0.211 tol=0.477
2024-12-06 00:32:57,299 alphafold2_multimer_v3_model_2_seed_000 took 30.1s (7 recycles)
2024-12-06 00:33:01,175 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=69.8 pTM=0.608 ipTM=0.17
2024-12-06 00:33:04,952 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=71.4 pTM=0.632 ipTM=0.186 tol=3.42
2024-12-06 00:33:08,720 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=71.9 pTM=0.631 ipTM=0.186 tol=3.49
2024-12-06 00:33:12,488 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=72.3 pTM=0.637 ipTM=0.207 tol=1.48
2024-12-06 00:33:16,263 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.2 pTM=0.634 ipTM=0.176 tol=0.659
2024-12-06 00:33:20,031 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.8 pTM=0.635 ipTM=0.198 tol=0.894
2024-12-06 00:33:23,800 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72.4 pTM=0.633 ipTM=0.199 tol=0.421
2024-12-06 00:33:23,800 alphafold2_multimer_v3_model_3_seed_000 took 26.4s (6 recycles)
2024-12-06 00:33:27,671 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=70.6 pTM=0.636 ipTM=0.222
2024-12-06 00:33:31,444 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.1 pTM=0.644 ipTM=0.204 tol=3.15
2024-12-06 00:33:35,221 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=73.4 pTM=0.641 ipTM=0.172 tol=2.24
2024-12-06 00:33:38,990 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=73.4 pTM=0.64 ipTM=0.186 tol=2.33
2024-12-06 00:33:42,757 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=73.8 pTM=0.635 ipTM=0.165 tol=1.4
2024-12-06 00:33:46,525 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=74.2 pTM=0.636 ipTM=0.177 tol=0.725
2024-12-06 00:33:50,292 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=74.1 pTM=0.631 ipTM=0.158 tol=1.19
2024-12-06 00:33:54,052 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=74.1 pTM=0.633 ipTM=0.174 tol=0.84
2024-12-06 00:33:57,815 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=73.5 pTM=0.631 ipTM=0.157 tol=2.05
2024-12-06 00:34:01,575 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.8 pTM=0.631 ipTM=0.174 tol=2.02
2024-12-06 00:34:05,340 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=74.1 pTM=0.631 ipTM=0.158 tol=1.24
2024-12-06 00:34:09,095 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=73.8 pTM=0.63 ipTM=0.168 tol=1.58
2024-12-06 00:34:12,861 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=74.4 pTM=0.633 ipTM=0.158 tol=1.31
2024-12-06 00:34:16,632 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=74.2 pTM=0.634 ipTM=0.168 tol=1.42
2024-12-06 00:34:20,398 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.5 pTM=0.625 ipTM=0.157 tol=0.861
2024-12-06 00:34:24,154 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73.6 pTM=0.63 ipTM=0.181 tol=0.836
2024-12-06 00:34:27,917 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=73.4 pTM=0.63 ipTM=0.163 tol=3.07
2024-12-06 00:34:31,682 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=73.8 pTM=0.633 ipTM=0.177 tol=1.83
2024-12-06 00:34:35,450 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=73.9 pTM=0.628 ipTM=0.163 tol=1.58
2024-12-06 00:34:39,217 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=74.6 pTM=0.631 ipTM=0.169 tol=0.714
2024-12-06 00:34:42,982 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=74.1 pTM=0.625 ipTM=0.161 tol=0.668
2024-12-06 00:34:46,754 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=74.7 pTM=0.638 ipTM=0.171 tol=3.16
2024-12-06 00:34:50,524 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=74.2 pTM=0.633 ipTM=0.172 tol=2.05
2024-12-06 00:34:54,284 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73.8 pTM=0.629 ipTM=0.173 tol=1.69
2024-12-06 00:34:58,052 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=74 pTM=0.632 ipTM=0.169 tol=3.14
2024-12-06 00:35:01,820 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=74.1 pTM=0.636 ipTM=0.176 tol=2.35
2024-12-06 00:35:05,588 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=73.8 pTM=0.629 ipTM=0.166 tol=2.72
2024-12-06 00:35:09,349 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=73.9 pTM=0.631 ipTM=0.172 tol=2.82
2024-12-06 00:35:13,111 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=74 pTM=0.625 ipTM=0.16 tol=1.69
2024-12-06 00:35:16,870 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=73.9 pTM=0.63 ipTM=0.174 tol=1.39
2024-12-06 00:35:20,631 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=73.8 pTM=0.631 ipTM=0.164 tol=1.82
2024-12-06 00:35:20,631 alphafold2_multimer_v3_model_4_seed_000 took 116.7s (30 recycles)
2024-12-06 00:35:24,503 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.1 pTM=0.593 ipTM=0.157
2024-12-06 00:35:28,267 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=70.9 pTM=0.614 ipTM=0.152 tol=2.66
2024-12-06 00:35:32,031 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72.8 pTM=0.624 ipTM=0.153 tol=2.37
2024-12-06 00:35:35,788 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=72.6 pTM=0.621 ipTM=0.163 tol=1.75
2024-12-06 00:35:39,551 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=73.2 pTM=0.623 ipTM=0.15 tol=1.84
2024-12-06 00:35:43,316 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=73.2 pTM=0.621 ipTM=0.156 tol=1.75
2024-12-06 00:35:47,081 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.8 pTM=0.619 ipTM=0.16 tol=2.58
2024-12-06 00:35:50,839 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=73.2 pTM=0.62 ipTM=0.161 tol=1
2024-12-06 00:35:54,599 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=72.7 pTM=0.617 ipTM=0.162 tol=0.998
2024-12-06 00:35:58,366 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.6 pTM=0.617 ipTM=0.173 tol=0.442
2024-12-06 00:35:58,367 alphafold2_multimer_v3_model_5_seed_000 took 37.6s (9 recycles)
2024-12-06 00:35:58,482 reranking models by 'multimer' metric
2024-12-06 00:36:02,186 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 00:36:27,031 Relaxation took 28.5s
2024-12-06 00:36:27,032 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74 pTM=0.637 ipTM=0.211
2024-12-06 00:36:35,244 Relaxation took 8.2s
2024-12-06 00:36:35,244 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.4 pTM=0.633 ipTM=0.199
2024-12-06 00:36:50,803 Relaxation took 15.6s
2024-12-06 00:36:50,803 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.6 pTM=0.617 ipTM=0.173
2024-12-06 00:37:04,394 Relaxation took 13.6s
2024-12-06 00:37:04,394 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74.4 pTM=0.616 ipTM=0.17
2024-12-06 00:37:21,742 Relaxation took 17.3s
2024-12-06 00:37:21,742 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=73.8 pTM=0.631 ipTM=0.164
2024-12-06 00:37:22,652 Done