2024-12-06 02:41:56,571 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 02:41:56,903 Running on GPU
2024-12-06 02:42:01,245 Found 6 citations for tools or databases
2024-12-06 02:42:01,245 Query 1/1: FBXO2_SKP1 (length 459)
2024-12-06 02:42:01,610 Sleeping for 9s. Reason: PENDING
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2024-12-06 02:42:19,137 Sleeping for 9s. Reason: RUNNING
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2024-12-06 02:42:50,173 Sleeping for 8s. Reason: RUNNING
2024-12-06 02:42:58,429 Sleeping for 10s. Reason: RUNNING
2024-12-06 02:43:08,685 Sleeping for 10s. Reason: RUNNING
2024-12-06 02:43:25,569 Sleeping for 8s. Reason: PENDING
2024-12-06 02:43:33,829 Sleeping for 5s. Reason: PENDING
2024-12-06 02:43:39,086 Sleeping for 6s. Reason: PENDING
2024-12-06 02:43:45,345 Sleeping for 8s. Reason: PENDING
2024-12-06 02:43:53,605 Sleeping for 6s. Reason: RUNNING
2024-12-06 02:43:59,864 Sleeping for 8s. Reason: RUNNING
2024-12-06 02:44:08,126 Sleeping for 6s. Reason: RUNNING
2024-12-06 02:44:14,390 Sleeping for 7s. Reason: RUNNING
2024-12-06 02:44:21,646 Sleeping for 8s. Reason: RUNNING
2024-12-06 02:44:31,642 Setting max_seq=508, max_extra_seq=2048
2024-12-06 02:47:18,837 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=84.7 pTM=0.784 ipTM=0.879
2024-12-06 02:47:23,563 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=85.5 pTM=0.804 ipTM=0.886 tol=1.35
2024-12-06 02:47:28,279 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=85.4 pTM=0.799 ipTM=0.883 tol=0.887
2024-12-06 02:47:32,995 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=85.4 pTM=0.794 ipTM=0.885 tol=0.966
2024-12-06 02:47:37,706 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.2 pTM=0.79 ipTM=0.884 tol=1.99
2024-12-06 02:47:42,414 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.2 pTM=0.789 ipTM=0.884 tol=1.75
2024-12-06 02:47:47,112 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.1 pTM=0.786 ipTM=0.882 tol=1.96
2024-12-06 02:47:51,808 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85.1 pTM=0.785 ipTM=0.882 tol=3.06
2024-12-06 02:47:56,507 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=84.9 pTM=0.784 ipTM=0.882 tol=1.13
2024-12-06 02:48:01,204 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=85.1 pTM=0.786 ipTM=0.884 tol=1.09
2024-12-06 02:48:05,902 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=85.1 pTM=0.785 ipTM=0.882 tol=0.746
2024-12-06 02:48:10,603 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=85.2 pTM=0.787 ipTM=0.883 tol=2.2
2024-12-06 02:48:15,298 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=85 pTM=0.784 ipTM=0.882 tol=0.458
2024-12-06 02:48:15,299 alphafold2_multimer_v3_model_1_seed_000 took 218.4s (12 recycles)
2024-12-06 02:48:20,209 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.6 pTM=0.778 ipTM=0.881
2024-12-06 02:48:24,947 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=85.8 pTM=0.796 ipTM=0.893 tol=2.34
2024-12-06 02:48:29,673 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=85.3 pTM=0.786 ipTM=0.881 tol=1.21
2024-12-06 02:48:34,397 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=85.3 pTM=0.784 ipTM=0.887 tol=0.306
2024-12-06 02:48:34,397 alphafold2_multimer_v3_model_2_seed_000 took 18.9s (3 recycles)
2024-12-06 02:48:39,283 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=84.8 pTM=0.765 ipTM=0.879
2024-12-06 02:48:44,041 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=85.2 pTM=0.784 ipTM=0.882 tol=1.74
2024-12-06 02:48:48,779 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.3 pTM=0.784 ipTM=0.879 tol=1.42
2024-12-06 02:48:53,519 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=85.1 pTM=0.784 ipTM=0.88 tol=1.56
2024-12-06 02:48:58,247 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.2 pTM=0.778 ipTM=0.875 tol=1.01
2024-12-06 02:49:02,978 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.4 pTM=0.78 ipTM=0.879 tol=0.848
2024-12-06 02:49:07,709 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.3 pTM=0.775 ipTM=0.874 tol=0.758
2024-12-06 02:49:12,434 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=85.3 pTM=0.775 ipTM=0.876 tol=0.553
2024-12-06 02:49:17,160 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=85.4 pTM=0.775 ipTM=0.876 tol=0.472
2024-12-06 02:49:17,161 alphafold2_multimer_v3_model_3_seed_000 took 42.6s (8 recycles)
2024-12-06 02:49:22,036 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84.7 pTM=0.77 ipTM=0.869
2024-12-06 02:49:26,769 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=85.4 pTM=0.779 ipTM=0.882 tol=1.5
2024-12-06 02:49:31,498 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=85.8 pTM=0.78 ipTM=0.877 tol=2.11
2024-12-06 02:49:36,233 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85.6 pTM=0.778 ipTM=0.879 tol=1.93
2024-12-06 02:49:40,954 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=85.6 pTM=0.773 ipTM=0.875 tol=1.73
2024-12-06 02:49:45,681 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=85.5 pTM=0.775 ipTM=0.877 tol=1.44
2024-12-06 02:49:50,394 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=85.7 pTM=0.774 ipTM=0.873 tol=1.64
2024-12-06 02:49:55,118 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=85.5 pTM=0.772 ipTM=0.877 tol=0.792
2024-12-06 02:49:59,846 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=85.9 pTM=0.776 ipTM=0.876 tol=0.999
2024-12-06 02:50:04,584 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=85.7 pTM=0.777 ipTM=0.879 tol=1.06
2024-12-06 02:50:09,309 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=85.8 pTM=0.773 ipTM=0.874 tol=1.26
2024-12-06 02:50:14,031 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=85.5 pTM=0.771 ipTM=0.876 tol=1.37
2024-12-06 02:50:18,754 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=85.8 pTM=0.771 ipTM=0.873 tol=1.14
2024-12-06 02:50:23,483 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=85.5 pTM=0.774 ipTM=0.876 tol=1.3
2024-12-06 02:50:28,203 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=85.7 pTM=0.773 ipTM=0.873 tol=1.27
2024-12-06 02:50:32,931 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=85.6 pTM=0.774 ipTM=0.878 tol=1.09
2024-12-06 02:50:37,654 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=85.8 pTM=0.772 ipTM=0.873 tol=1.06
2024-12-06 02:50:42,386 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=85.7 pTM=0.774 ipTM=0.877 tol=1.04
2024-12-06 02:50:47,112 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=85.8 pTM=0.773 ipTM=0.876 tol=1.07
2024-12-06 02:50:51,838 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=85.6 pTM=0.772 ipTM=0.877 tol=1.61
2024-12-06 02:50:56,562 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=85.8 pTM=0.771 ipTM=0.874 tol=1.66
2024-12-06 02:51:01,290 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=85.7 pTM=0.772 ipTM=0.879 tol=1.27
2024-12-06 02:51:06,013 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=85.6 pTM=0.77 ipTM=0.873 tol=1.74
2024-12-06 02:51:10,734 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=85.4 pTM=0.77 ipTM=0.876 tol=1.49
2024-12-06 02:51:15,449 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=85.6 pTM=0.771 ipTM=0.873 tol=1.59
2024-12-06 02:51:20,176 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=85.5 pTM=0.769 ipTM=0.877 tol=1.61
2024-12-06 02:51:24,903 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=85.8 pTM=0.771 ipTM=0.873 tol=1.33
2024-12-06 02:51:29,670 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=85.6 pTM=0.77 ipTM=0.877 tol=1.81
2024-12-06 02:51:34,414 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=85.7 pTM=0.773 ipTM=0.873 tol=1.67
2024-12-06 02:51:39,151 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=85.4 pTM=0.772 ipTM=0.878 tol=1.38
2024-12-06 02:51:43,873 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=85.6 pTM=0.771 ipTM=0.872 tol=1.91
2024-12-06 02:51:43,873 alphafold2_multimer_v3_model_4_seed_000 took 146.6s (30 recycles)
2024-12-06 02:51:48,733 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=83.9 pTM=0.761 ipTM=0.875
2024-12-06 02:51:53,480 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=85.1 pTM=0.787 ipTM=0.882 tol=1.17
2024-12-06 02:51:58,224 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=85.2 pTM=0.785 ipTM=0.876 tol=1.92
2024-12-06 02:52:02,955 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=85.2 pTM=0.784 ipTM=0.879 tol=0.757
2024-12-06 02:52:07,677 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=85.2 pTM=0.777 ipTM=0.878 tol=1.32
2024-12-06 02:52:12,399 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.2 pTM=0.775 ipTM=0.879 tol=1.22
2024-12-06 02:52:17,116 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=85.1 pTM=0.774 ipTM=0.876 tol=1.28
2024-12-06 02:52:21,840 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.1 pTM=0.774 ipTM=0.878 tol=0.351
2024-12-06 02:52:21,840 alphafold2_multimer_v3_model_5_seed_000 took 37.8s (7 recycles)
2024-12-06 02:52:21,984 reranking models by 'multimer' metric
2024-12-06 02:52:23,671 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 02:52:35,887 Relaxation took 13.9s
2024-12-06 02:52:35,887 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=85.3 pTM=0.784 ipTM=0.887
2024-12-06 02:52:50,517 Relaxation took 14.6s
2024-12-06 02:52:50,517 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85 pTM=0.784 ipTM=0.882
2024-12-06 02:52:59,438 Relaxation took 8.9s
2024-12-06 02:52:59,438 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.1 pTM=0.774 ipTM=0.878
2024-12-06 02:53:08,001 Relaxation took 8.6s
2024-12-06 02:53:08,001 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.4 pTM=0.775 ipTM=0.876
2024-12-06 02:53:15,987 Relaxation took 8.0s
2024-12-06 02:53:15,987 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=85.6 pTM=0.771 ipTM=0.872
2024-12-06 02:53:16,973 Done