2024-12-06 03:23:10,311 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 03:23:11,795 Running on GPU
2024-12-06 03:23:16,177 Found 6 citations for tools or databases
2024-12-06 03:23:16,177 Query 1/1: FBXO2_VPS25 (length 472)
2024-12-06 03:23:16,465 Sleeping for 10s. Reason: PENDING
2024-12-06 03:23:26,724 Sleeping for 7s. Reason: RUNNING
2024-12-06 03:23:33,984 Sleeping for 5s. Reason: RUNNING
2024-12-06 03:23:39,241 Sleeping for 10s. Reason: RUNNING
2024-12-06 03:23:49,503 Sleeping for 9s. Reason: RUNNING
2024-12-06 03:23:58,770 Sleeping for 8s. Reason: RUNNING
2024-12-06 03:24:07,034 Sleeping for 7s. Reason: RUNNING
2024-12-06 03:24:14,298 Sleeping for 7s. Reason: RUNNING
2024-12-06 03:24:22,911 Sleeping for 8s. Reason: PENDING
2024-12-06 03:24:31,176 Sleeping for 9s. Reason: RUNNING
2024-12-06 03:24:40,436 Sleeping for 10s. Reason: RUNNING
2024-12-06 03:24:50,704 Sleeping for 7s. Reason: RUNNING
2024-12-06 03:24:57,971 Sleeping for 10s. Reason: RUNNING
2024-12-06 03:25:10,287 Setting max_seq=508, max_extra_seq=2048
2024-12-06 03:28:12,760 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=85.1 pTM=0.699 ipTM=0.568
2024-12-06 03:28:19,402 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.2 pTM=0.581 ipTM=0.281 tol=2.21
2024-12-06 03:28:26,033 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=84.6 pTM=0.625 ipTM=0.371 tol=3.53
2024-12-06 03:28:32,675 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=84.5 pTM=0.609 ipTM=0.339 tol=2.19
2024-12-06 03:28:39,297 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=84.7 pTM=0.633 ipTM=0.399 tol=2.22
2024-12-06 03:28:45,931 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=84.7 pTM=0.619 ipTM=0.374 tol=1.53
2024-12-06 03:28:52,554 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=84.2 pTM=0.595 ipTM=0.309 tol=0.879
2024-12-06 03:28:59,188 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85.6 pTM=0.671 ipTM=0.5 tol=1.77
2024-12-06 03:29:05,811 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=84.6 pTM=0.615 ipTM=0.357 tol=1.45
2024-12-06 03:29:12,432 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=84.2 pTM=0.619 ipTM=0.375 tol=0.802
2024-12-06 03:29:19,054 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=84.4 pTM=0.601 ipTM=0.326 tol=0.839
2024-12-06 03:29:25,686 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=85.4 pTM=0.645 ipTM=0.444 tol=1.21
2024-12-06 03:29:32,309 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=84.4 pTM=0.607 ipTM=0.342 tol=0.832
2024-12-06 03:29:38,938 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=84.2 pTM=0.606 ipTM=0.336 tol=0.786
2024-12-06 03:29:45,562 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=84.8 pTM=0.629 ipTM=0.408 tol=0.991
2024-12-06 03:29:52,192 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=84.5 pTM=0.624 ipTM=0.389 tol=1.44
2024-12-06 03:29:58,809 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=85.1 pTM=0.645 ipTM=0.441 tol=0.858
2024-12-06 03:30:05,440 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=84.8 pTM=0.61 ipTM=0.35 tol=1.37
2024-12-06 03:30:12,058 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=85.1 pTM=0.648 ipTM=0.452 tol=1.09
2024-12-06 03:30:18,683 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=84.4 pTM=0.604 ipTM=0.344 tol=1.23
2024-12-06 03:30:25,303 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=84.6 pTM=0.611 ipTM=0.35 tol=0.841
2024-12-06 03:30:31,930 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=84.8 pTM=0.645 ipTM=0.436 tol=1.46
2024-12-06 03:30:38,548 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=84.5 pTM=0.609 ipTM=0.352 tol=1.09
2024-12-06 03:30:45,170 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=85.1 pTM=0.661 ipTM=0.478 tol=1.08
2024-12-06 03:30:51,790 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=84.9 pTM=0.625 ipTM=0.385 tol=1.41
2024-12-06 03:30:58,421 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=85.1 pTM=0.629 ipTM=0.386 tol=0.575
2024-12-06 03:31:05,037 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=85 pTM=0.645 ipTM=0.438 tol=0.975
2024-12-06 03:31:11,666 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=84.8 pTM=0.618 ipTM=0.366 tol=0.788
2024-12-06 03:31:18,279 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=85.1 pTM=0.65 ipTM=0.448 tol=0.859
2024-12-06 03:31:24,909 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=85.1 pTM=0.626 ipTM=0.388 tol=1.27
2024-12-06 03:31:31,532 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=85.1 pTM=0.622 ipTM=0.371 tol=0.447
2024-12-06 03:31:31,532 alphafold2_multimer_v3_model_1_seed_000 took 360.0s (30 recycles)
2024-12-06 03:31:38,400 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=82.5 pTM=0.57 ipTM=0.241
2024-12-06 03:31:45,051 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=84.2 pTM=0.627 ipTM=0.386 tol=2.75
2024-12-06 03:31:51,692 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.6 pTM=0.572 ipTM=0.241 tol=1.92
2024-12-06 03:31:58,342 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.2 pTM=0.57 ipTM=0.222 tol=1.5
2024-12-06 03:32:04,981 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84 pTM=0.558 ipTM=0.194 tol=1.86
2024-12-06 03:32:11,633 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.6 pTM=0.565 ipTM=0.21 tol=2.86
2024-12-06 03:32:18,277 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=87 pTM=0.748 ipTM=0.7 tol=3.36
2024-12-06 03:32:24,936 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=87.4 pTM=0.757 ipTM=0.728 tol=0.862
2024-12-06 03:32:31,580 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=87.2 pTM=0.75 ipTM=0.704 tol=0.576
2024-12-06 03:32:38,235 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=87.2 pTM=0.756 ipTM=0.721 tol=1.19
2024-12-06 03:32:44,886 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=87.5 pTM=0.764 ipTM=0.736 tol=0.835
2024-12-06 03:32:51,541 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=87.4 pTM=0.761 ipTM=0.732 tol=0.281
2024-12-06 03:32:51,541 alphafold2_multimer_v3_model_2_seed_000 took 79.8s (11 recycles)
2024-12-06 03:32:58,404 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=83 pTM=0.624 ipTM=0.386
2024-12-06 03:33:05,052 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.4 pTM=0.592 ipTM=0.326 tol=2.78
2024-12-06 03:33:11,693 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.9 pTM=0.605 ipTM=0.329 tol=3.29
2024-12-06 03:33:18,339 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.8 pTM=0.595 ipTM=0.301 tol=1.25
2024-12-06 03:33:24,971 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=84 pTM=0.572 ipTM=0.239 tol=0.95
2024-12-06 03:33:31,619 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.2 pTM=0.581 ipTM=0.244 tol=1.19
2024-12-06 03:33:38,249 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.2 pTM=0.64 ipTM=0.435 tol=1.52
2024-12-06 03:33:44,890 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=84.4 pTM=0.578 ipTM=0.269 tol=1.91
2024-12-06 03:33:51,532 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=84.8 pTM=0.578 ipTM=0.233 tol=3.77
2024-12-06 03:33:58,183 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=86.9 pTM=0.763 ipTM=0.734 tol=2.57
2024-12-06 03:34:04,827 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=87.2 pTM=0.771 ipTM=0.752 tol=0.922
2024-12-06 03:34:11,487 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=87.5 pTM=0.778 ipTM=0.767 tol=0.724
2024-12-06 03:34:18,131 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=87.3 pTM=0.774 ipTM=0.756 tol=0.98
2024-12-06 03:34:24,787 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=87.4 pTM=0.776 ipTM=0.765 tol=0.562
2024-12-06 03:34:31,436 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=87.4 pTM=0.778 ipTM=0.767 tol=0.293
2024-12-06 03:34:31,437 alphafold2_multimer_v3_model_3_seed_000 took 99.7s (14 recycles)
2024-12-06 03:34:38,297 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84 pTM=0.669 ipTM=0.492
2024-12-06 03:34:44,952 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=84.1 pTM=0.595 ipTM=0.286 tol=3.07
2024-12-06 03:34:51,590 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=84 pTM=0.593 ipTM=0.265 tol=1.31
2024-12-06 03:34:58,242 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.8 pTM=0.575 ipTM=0.217 tol=1.37
2024-12-06 03:35:04,884 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.5 pTM=0.573 ipTM=0.217 tol=0.928
2024-12-06 03:35:11,528 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=85.6 pTM=0.678 ipTM=0.497 tol=2.5
2024-12-06 03:35:18,163 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.4 pTM=0.593 ipTM=0.274 tol=2.31
2024-12-06 03:35:24,816 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83.4 pTM=0.57 ipTM=0.209 tol=0.912
2024-12-06 03:35:31,455 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84.4 pTM=0.608 ipTM=0.315 tol=1.64
2024-12-06 03:35:38,105 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=83.6 pTM=0.561 ipTM=0.187 tol=2.15
2024-12-06 03:35:44,753 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.7 pTM=0.569 ipTM=0.211 tol=2.87
2024-12-06 03:35:51,407 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=86.9 pTM=0.731 ipTM=0.642 tol=3.71
2024-12-06 03:35:58,051 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=87.2 pTM=0.744 ipTM=0.678 tol=0.579
2024-12-06 03:36:04,708 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=87.4 pTM=0.745 ipTM=0.681 tol=0.261
2024-12-06 03:36:04,708 alphafold2_multimer_v3_model_4_seed_000 took 93.1s (13 recycles)
2024-12-06 03:36:11,580 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=81.6 pTM=0.559 ipTM=0.229
2024-12-06 03:36:18,246 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.9 pTM=0.565 ipTM=0.242 tol=2.65
2024-12-06 03:36:24,892 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=83.2 pTM=0.564 ipTM=0.219 tol=2
2024-12-06 03:36:31,556 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=83.2 pTM=0.559 ipTM=0.206 tol=1.04
2024-12-06 03:36:38,216 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=86.2 pTM=0.749 ipTM=0.715 tol=4.12
2024-12-06 03:36:44,877 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=86.4 pTM=0.75 ipTM=0.724 tol=0.743
2024-12-06 03:36:51,531 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=86.4 pTM=0.749 ipTM=0.719 tol=0.562
2024-12-06 03:36:58,193 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=86.6 pTM=0.754 ipTM=0.728 tol=0.276
2024-12-06 03:36:58,194 alphafold2_multimer_v3_model_5_seed_000 took 53.3s (7 recycles)
2024-12-06 03:36:58,414 reranking models by 'multimer' metric
2024-12-06 03:37:02,043 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 03:37:19,996 Relaxation took 21.6s
2024-12-06 03:37:19,996 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=87.4 pTM=0.778 ipTM=0.767
2024-12-06 03:37:31,976 Relaxation took 12.0s
2024-12-06 03:37:31,977 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87.4 pTM=0.761 ipTM=0.732
2024-12-06 03:37:43,821 Relaxation took 11.8s
2024-12-06 03:37:43,821 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=86.6 pTM=0.754 ipTM=0.728
2024-12-06 03:37:56,062 Relaxation took 12.2s
2024-12-06 03:37:56,062 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=87.4 pTM=0.745 ipTM=0.681
2024-12-06 03:38:15,343 Relaxation took 19.3s
2024-12-06 03:38:15,344 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85.1 pTM=0.622 ipTM=0.371
2024-12-06 03:38:16,645 Done