2024-12-06 04:44:15,967 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 04:44:16,279 Running on GPU
2024-12-06 04:44:19,606 Found 6 citations for tools or databases
2024-12-06 04:44:19,606 Query 1/1: FBXO45_SKP1 (length 449)
2024-12-06 04:44:19,880 Sleeping for 9s. Reason: PENDING
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2024-12-06 04:45:34,643 Sleeping for 10s. Reason: PENDING
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2024-12-06 04:47:25,018 Sleeping for 8s. Reason: RUNNING
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2024-12-06 04:48:06,311 Sleeping for 9s. Reason: RUNNING
2024-12-06 04:48:17,253 Setting max_seq=508, max_extra_seq=2048
2024-12-06 04:51:08,274 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=86.6 pTM=0.829 ipTM=0.891
2024-12-06 04:51:12,955 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=87.3 pTM=0.837 ipTM=0.887 tol=1.79
2024-12-06 04:51:17,632 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=87.4 pTM=0.838 ipTM=0.886 tol=1.01
2024-12-06 04:51:22,312 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=87.4 pTM=0.837 ipTM=0.884 tol=1.54
2024-12-06 04:51:26,984 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=87.2 pTM=0.835 ipTM=0.882 tol=0.882
2024-12-06 04:51:31,649 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=87.2 pTM=0.834 ipTM=0.881 tol=1.16
2024-12-06 04:51:36,321 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=87.3 pTM=0.836 ipTM=0.882 tol=3.26
2024-12-06 04:51:40,997 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=87.4 pTM=0.835 ipTM=0.882 tol=0.885
2024-12-06 04:51:45,667 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=87.2 pTM=0.834 ipTM=0.879 tol=2.68
2024-12-06 04:51:50,338 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=87.2 pTM=0.834 ipTM=0.879 tol=1.42
2024-12-06 04:51:55,010 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=87.3 pTM=0.835 ipTM=0.881 tol=0.714
2024-12-06 04:51:59,675 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=87.1 pTM=0.832 ipTM=0.876 tol=1.05
2024-12-06 04:52:04,337 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=87.1 pTM=0.832 ipTM=0.875 tol=1.12
2024-12-06 04:52:08,999 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=87.2 pTM=0.833 ipTM=0.881 tol=1.73
2024-12-06 04:52:13,670 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=87.3 pTM=0.834 ipTM=0.88 tol=1.47
2024-12-06 04:52:18,331 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=87.2 pTM=0.833 ipTM=0.879 tol=2.08
2024-12-06 04:52:22,993 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=87.2 pTM=0.831 ipTM=0.874 tol=0.882
2024-12-06 04:52:27,655 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=87.2 pTM=0.832 ipTM=0.875 tol=1.15
2024-12-06 04:52:32,324 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=87.2 pTM=0.833 ipTM=0.875 tol=1.54
2024-12-06 04:52:36,983 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=87.1 pTM=0.833 ipTM=0.876 tol=1.78
2024-12-06 04:52:41,645 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=87 pTM=0.831 ipTM=0.875 tol=0.519
2024-12-06 04:52:46,309 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=86.9 pTM=0.83 ipTM=0.87 tol=0.694
2024-12-06 04:52:50,975 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=87.2 pTM=0.833 ipTM=0.879 tol=0.67
2024-12-06 04:52:55,646 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=87.2 pTM=0.833 ipTM=0.88 tol=2.66
2024-12-06 04:53:00,303 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=86.9 pTM=0.831 ipTM=0.874 tol=2.59
2024-12-06 04:53:04,970 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=87.1 pTM=0.832 ipTM=0.877 tol=1.4
2024-12-06 04:53:09,642 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=87.1 pTM=0.833 ipTM=0.877 tol=0.875
2024-12-06 04:53:14,316 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=87.1 pTM=0.832 ipTM=0.873 tol=0.66
2024-12-06 04:53:18,997 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=87.4 pTM=0.835 ipTM=0.881 tol=0.666
2024-12-06 04:53:23,660 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=87.1 pTM=0.833 ipTM=0.88 tol=0.31
2024-12-06 04:53:23,660 alphafold2_multimer_v3_model_1_seed_000 took 302.8s (29 recycles)
2024-12-06 04:53:28,487 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=86.7 pTM=0.829 ipTM=0.896
2024-12-06 04:53:33,203 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=87.4 pTM=0.836 ipTM=0.889 tol=1.26
2024-12-06 04:53:37,907 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=87.3 pTM=0.836 ipTM=0.893 tol=1.06
2024-12-06 04:53:42,601 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=87.4 pTM=0.835 ipTM=0.896 tol=1.43
2024-12-06 04:53:47,309 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=87.5 pTM=0.836 ipTM=0.899 tol=0.55
2024-12-06 04:53:52,015 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=87.6 pTM=0.837 ipTM=0.901 tol=0.35
2024-12-06 04:53:52,015 alphafold2_multimer_v3_model_2_seed_000 took 28.2s (5 recycles)
2024-12-06 04:53:56,895 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.5 pTM=0.835 ipTM=0.915
2024-12-06 04:54:01,648 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=87.9 pTM=0.845 ipTM=0.916 tol=3.45
2024-12-06 04:54:06,394 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=87.9 pTM=0.845 ipTM=0.913 tol=0.593
2024-12-06 04:54:11,128 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=87.9 pTM=0.844 ipTM=0.911 tol=1.11
2024-12-06 04:54:15,861 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=87.9 pTM=0.843 ipTM=0.909 tol=0.585
2024-12-06 04:54:20,594 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=88 pTM=0.844 ipTM=0.912 tol=0.533
2024-12-06 04:54:25,324 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=88 pTM=0.843 ipTM=0.91 tol=0.364
2024-12-06 04:54:25,324 alphafold2_multimer_v3_model_3_seed_000 took 33.2s (6 recycles)
2024-12-06 04:54:30,174 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=86.9 pTM=0.831 ipTM=0.898
2024-12-06 04:54:34,919 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=87.9 pTM=0.844 ipTM=0.907 tol=2.84
2024-12-06 04:54:39,646 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=87.8 pTM=0.841 ipTM=0.903 tol=1.08
2024-12-06 04:54:44,366 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=87.8 pTM=0.84 ipTM=0.901 tol=0.873
2024-12-06 04:54:49,078 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=87.8 pTM=0.839 ipTM=0.9 tol=0.46
2024-12-06 04:54:49,079 alphafold2_multimer_v3_model_4_seed_000 took 23.6s (4 recycles)
2024-12-06 04:54:53,917 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=86.9 pTM=0.832 ipTM=0.908
2024-12-06 04:54:58,636 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=87.4 pTM=0.838 ipTM=0.906 tol=3.99
2024-12-06 04:55:03,358 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=87.6 pTM=0.841 ipTM=0.903 tol=1.24
2024-12-06 04:55:08,068 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=87.6 pTM=0.84 ipTM=0.901 tol=0.834
2024-12-06 04:55:12,770 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=87.4 pTM=0.838 ipTM=0.897 tol=1.24
2024-12-06 04:55:17,468 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=87.4 pTM=0.838 ipTM=0.897 tol=0.576
2024-12-06 04:55:22,176 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=87.6 pTM=0.841 ipTM=0.901 tol=0.439
2024-12-06 04:55:22,177 alphafold2_multimer_v3_model_5_seed_000 took 33.0s (6 recycles)
2024-12-06 04:55:22,313 reranking models by 'multimer' metric
2024-12-06 04:55:25,056 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 04:55:36,778 Relaxation took 14.5s
2024-12-06 04:55:36,778 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=88 pTM=0.843 ipTM=0.91
2024-12-06 04:55:44,460 Relaxation took 7.7s
2024-12-06 04:55:44,460 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=87.6 pTM=0.841 ipTM=0.901
2024-12-06 04:55:56,579 Relaxation took 12.1s
2024-12-06 04:55:56,579 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=87.8 pTM=0.839 ipTM=0.9
2024-12-06 04:56:04,087 Relaxation took 7.5s
2024-12-06 04:56:04,087 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87.6 pTM=0.837 ipTM=0.901
2024-12-06 04:56:12,704 Relaxation took 8.6s
2024-12-06 04:56:12,704 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=87.1 pTM=0.833 ipTM=0.88
2024-12-06 04:56:13,660 Done