2024-12-06 04:56:51,126 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 04:56:51,431 Running on GPU
2024-12-06 04:56:55,340 Found 6 citations for tools or databases
2024-12-06 04:56:55,340 Query 1/1: FBXO4_SKP1 (length 550)
2024-12-06 04:56:55,658 Sleeping for 5s. Reason: PENDING
2024-12-06 04:57:00,909 Sleeping for 10s. Reason: RUNNING
2024-12-06 04:57:11,168 Sleeping for 6s. Reason: RUNNING
2024-12-06 04:57:17,424 Sleeping for 10s. Reason: RUNNING
2024-12-06 04:57:27,680 Sleeping for 6s. Reason: RUNNING
2024-12-06 04:57:33,931 Sleeping for 10s. Reason: RUNNING
2024-12-06 04:57:44,195 Sleeping for 7s. Reason: RUNNING
2024-12-06 04:57:51,454 Sleeping for 5s. Reason: RUNNING
2024-12-06 04:57:56,706 Sleeping for 9s. Reason: RUNNING
2024-12-06 04:58:05,962 Sleeping for 6s. Reason: RUNNING
2024-12-06 04:58:12,218 Sleeping for 6s. Reason: RUNNING
2024-12-06 04:58:18,471 Sleeping for 7s. Reason: RUNNING
2024-12-06 04:58:25,731 Sleeping for 6s. Reason: RUNNING
2024-12-06 04:58:31,985 Sleeping for 5s. Reason: RUNNING
2024-12-06 04:58:38,777 Sleeping for 9s. Reason: PENDING
2024-12-06 04:58:48,033 Sleeping for 9s. Reason: RUNNING
2024-12-06 04:58:57,290 Sleeping for 6s. Reason: RUNNING
2024-12-06 04:59:03,547 Sleeping for 8s. Reason: RUNNING
2024-12-06 04:59:11,809 Sleeping for 9s. Reason: RUNNING
2024-12-06 04:59:21,078 Sleeping for 8s. Reason: RUNNING
2024-12-06 04:59:29,329 Sleeping for 6s. Reason: RUNNING
2024-12-06 04:59:37,396 Setting max_seq=508, max_extra_seq=2048
2024-12-06 05:02:11,753 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=76.3 pTM=0.758 ipTM=0.906
2024-12-06 05:02:18,251 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.8 pTM=0.763 ipTM=0.879 tol=2.13
2024-12-06 05:02:24,749 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.1 pTM=0.768 ipTM=0.879 tol=0.6
2024-12-06 05:02:31,248 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78 pTM=0.762 ipTM=0.882 tol=0.416
2024-12-06 05:02:31,248 alphafold2_multimer_v3_model_1_seed_000 took 168.8s (3 recycles)
2024-12-06 05:02:38,002 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.9 pTM=0.758 ipTM=0.911
2024-12-06 05:02:44,585 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.6 pTM=0.796 ipTM=0.904 tol=1.71
2024-12-06 05:02:51,151 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.2 pTM=0.783 ipTM=0.908 tol=0.505
2024-12-06 05:02:57,716 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.3 pTM=0.778 ipTM=0.903 tol=0.42
2024-12-06 05:02:57,716 alphafold2_multimer_v3_model_2_seed_000 took 26.3s (3 recycles)
2024-12-06 05:03:04,474 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.8 pTM=0.763 ipTM=0.906
2024-12-06 05:03:11,042 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.8 pTM=0.775 ipTM=0.9 tol=1.51
2024-12-06 05:03:17,587 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.3 pTM=0.767 ipTM=0.891 tol=0.786
2024-12-06 05:03:24,147 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.5 pTM=0.768 ipTM=0.894 tol=0.472
2024-12-06 05:03:24,147 alphafold2_multimer_v3_model_3_seed_000 took 26.2s (3 recycles)
2024-12-06 05:03:30,918 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77 pTM=0.744 ipTM=0.899
2024-12-06 05:03:37,497 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.8 pTM=0.77 ipTM=0.89 tol=1.74
2024-12-06 05:03:44,072 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79 pTM=0.763 ipTM=0.892 tol=0.565
2024-12-06 05:03:50,656 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.4 pTM=0.749 ipTM=0.89 tol=1.2
2024-12-06 05:03:57,230 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.4 pTM=0.747 ipTM=0.892 tol=0.763
2024-12-06 05:04:03,792 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.5 pTM=0.764 ipTM=0.892 tol=1.15
2024-12-06 05:04:10,361 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.7 pTM=0.748 ipTM=0.893 tol=0.396
2024-12-06 05:04:10,362 alphafold2_multimer_v3_model_4_seed_000 took 46.0s (6 recycles)
2024-12-06 05:04:17,143 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.6 pTM=0.755 ipTM=0.901
2024-12-06 05:04:23,733 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.1 pTM=0.775 ipTM=0.894 tol=2.63
2024-12-06 05:04:30,322 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.8 pTM=0.771 ipTM=0.898 tol=0.815
2024-12-06 05:04:36,902 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.3 pTM=0.766 ipTM=0.895 tol=0.864
2024-12-06 05:04:43,479 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.7 pTM=0.769 ipTM=0.896 tol=0.817
2024-12-06 05:04:50,050 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.5 pTM=0.763 ipTM=0.895 tol=0.286
2024-12-06 05:04:50,050 alphafold2_multimer_v3_model_5_seed_000 took 39.5s (5 recycles)
2024-12-06 05:04:50,251 reranking models by 'multimer' metric
2024-12-06 05:04:53,291 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 05:05:10,326 Relaxation took 20.1s
2024-12-06 05:05:10,327 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.3 pTM=0.778 ipTM=0.903
2024-12-06 05:05:24,393 Relaxation took 14.1s
2024-12-06 05:05:24,393 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.5 pTM=0.768 ipTM=0.894
2024-12-06 05:05:38,676 Relaxation took 14.3s
2024-12-06 05:05:38,676 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.5 pTM=0.763 ipTM=0.895
2024-12-06 05:05:57,279 Relaxation took 18.6s
2024-12-06 05:05:57,279 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.7 pTM=0.748 ipTM=0.893
2024-12-06 05:06:10,149 Relaxation took 12.9s
2024-12-06 05:06:10,150 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78 pTM=0.762 ipTM=0.882
2024-12-06 05:06:11,449 Done