2024-12-06 05:40:59,195 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 05:40:59,523 Running on GPU
2024-12-06 05:41:03,936 Found 6 citations for tools or databases
2024-12-06 05:41:03,937 Query 1/1: FBXO9_EEF2 (length 1305)
2024-12-06 05:41:04,244 Sleeping for 6s. Reason: PENDING
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2024-12-06 05:45:46,853 Sleeping for 9s. Reason: PENDING
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2024-12-06 05:49:28,318 Setting max_seq=508, max_extra_seq=2048
2024-12-06 05:52:59,892 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=75.5 pTM=0.581 ipTM=0.459
2024-12-06 05:53:43,709 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.9 pTM=0.596 ipTM=0.538 tol=7.12
2024-12-06 05:54:27,753 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.7 pTM=0.707 ipTM=0.654 tol=5.88
2024-12-06 05:55:11,864 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.2 pTM=0.739 ipTM=0.699 tol=1.9
2024-12-06 05:55:56,086 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=81.2 pTM=0.732 ipTM=0.68 tol=4.25
2024-12-06 05:56:40,330 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.2 pTM=0.739 ipTM=0.689 tol=2.07
2024-12-06 05:57:24,605 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=81.4 pTM=0.738 ipTM=0.69 tol=0.601
2024-12-06 05:58:08,898 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=81.8 pTM=0.747 ipTM=0.7 tol=0.816
2024-12-06 05:58:53,182 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=81.6 pTM=0.742 ipTM=0.694 tol=1.27
2024-12-06 05:59:37,453 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=81.9 pTM=0.747 ipTM=0.698 tol=1.11
2024-12-06 06:00:21,620 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=81.6 pTM=0.739 ipTM=0.689 tol=0.651
2024-12-06 06:01:05,751 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81.2 pTM=0.729 ipTM=0.682 tol=0.595
2024-12-06 06:01:49,882 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=81.1 pTM=0.723 ipTM=0.679 tol=0.528
2024-12-06 06:02:33,982 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=81.1 pTM=0.73 ipTM=0.687 tol=0.798
2024-12-06 06:03:18,213 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=81.2 pTM=0.731 ipTM=0.681 tol=0.593
2024-12-06 06:04:02,461 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=81.6 pTM=0.735 ipTM=0.689 tol=0.701
2024-12-06 06:04:46,718 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=81.4 pTM=0.732 ipTM=0.69 tol=0.688
2024-12-06 06:05:30,976 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=81.4 pTM=0.736 ipTM=0.694 tol=0.983
2024-12-06 06:06:15,254 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=81.4 pTM=0.734 ipTM=0.69 tol=0.769
2024-12-06 06:06:59,548 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=80.9 pTM=0.724 ipTM=0.68 tol=0.573
2024-12-06 06:07:43,861 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=81.5 pTM=0.737 ipTM=0.694 tol=0.713
2024-12-06 06:08:28,153 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=81.4 pTM=0.733 ipTM=0.688 tol=0.873
2024-12-06 06:09:12,431 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=81.2 pTM=0.73 ipTM=0.685 tol=0.435
2024-12-06 06:09:12,432 alphafold2_multimer_v3_model_1_seed_000 took 1179.1s (22 recycles)
2024-12-06 06:09:57,762 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=76.3 pTM=0.637 ipTM=0.575
2024-12-06 06:10:42,197 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.7 pTM=0.59 ipTM=0.522 tol=4.36
2024-12-06 06:11:26,687 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=77.2 pTM=0.557 ipTM=0.456 tol=4.54
2024-12-06 06:12:11,178 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.4 pTM=0.55 ipTM=0.454 tol=3.5
2024-12-06 06:12:55,673 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.1 pTM=0.565 ipTM=0.457 tol=4.24
2024-12-06 06:13:40,086 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.4 pTM=0.712 ipTM=0.647 tol=8.66
2024-12-06 06:14:24,469 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.8 pTM=0.719 ipTM=0.652 tol=2.79
2024-12-06 06:15:08,848 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.9 pTM=0.726 ipTM=0.675 tol=0.396
2024-12-06 06:15:08,849 alphafold2_multimer_v3_model_2_seed_000 took 355.4s (7 recycles)
2024-12-06 06:15:54,267 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74 pTM=0.525 ipTM=0.43
2024-12-06 06:16:38,734 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.9 pTM=0.486 ipTM=0.446 tol=6.76
2024-12-06 06:17:23,172 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75.5 pTM=0.497 ipTM=0.447 tol=4.76
2024-12-06 06:18:07,604 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.8 pTM=0.512 ipTM=0.471 tol=3.84
2024-12-06 06:18:52,006 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.7 pTM=0.686 ipTM=0.605 tol=7.09
2024-12-06 06:19:36,381 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.2 pTM=0.701 ipTM=0.656 tol=2.36
2024-12-06 06:20:20,786 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.8 pTM=0.724 ipTM=0.689 tol=2.08
2024-12-06 06:21:05,148 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.6 pTM=0.719 ipTM=0.685 tol=1.19
2024-12-06 06:21:49,471 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.8 pTM=0.724 ipTM=0.696 tol=0.761
2024-12-06 06:22:33,827 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.6 pTM=0.713 ipTM=0.682 tol=1.23
2024-12-06 06:23:18,196 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.9 pTM=0.722 ipTM=0.693 tol=1.34
2024-12-06 06:24:02,541 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.8 pTM=0.711 ipTM=0.682 tol=0.492
2024-12-06 06:24:02,542 alphafold2_multimer_v3_model_3_seed_000 took 532.7s (11 recycles)
2024-12-06 06:24:47,959 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.6 pTM=0.549 ipTM=0.455
2024-12-06 06:25:32,398 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.7 pTM=0.579 ipTM=0.51 tol=4.41
2024-12-06 06:26:16,875 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.3 pTM=0.575 ipTM=0.498 tol=2.34
2024-12-06 06:27:01,310 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.2 pTM=0.572 ipTM=0.519 tol=2.17
2024-12-06 06:27:45,757 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.1 pTM=0.561 ipTM=0.492 tol=2.01
2024-12-06 06:28:30,220 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.1 pTM=0.583 ipTM=0.526 tol=1.11
2024-12-06 06:29:14,721 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.4 pTM=0.573 ipTM=0.516 tol=1.93
2024-12-06 06:29:59,210 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=77.1 pTM=0.588 ipTM=0.539 tol=1.71
2024-12-06 06:30:43,650 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.4 pTM=0.573 ipTM=0.514 tol=1.31
2024-12-06 06:31:28,096 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=77.5 pTM=0.59 ipTM=0.544 tol=1.17
2024-12-06 06:32:12,532 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=77.1 pTM=0.556 ipTM=0.498 tol=1.51
2024-12-06 06:32:56,928 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77.1 pTM=0.586 ipTM=0.539 tol=1.6
2024-12-06 06:33:41,359 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=76.6 pTM=0.552 ipTM=0.494 tol=1.65
2024-12-06 06:34:25,790 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=77.3 pTM=0.588 ipTM=0.538 tol=0.824
2024-12-06 06:35:10,225 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=76.8 pTM=0.555 ipTM=0.497 tol=1.31
2024-12-06 06:35:54,691 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=77.3 pTM=0.586 ipTM=0.541 tol=1.62
2024-12-06 06:36:39,107 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=80.1 pTM=0.735 ipTM=0.683 tol=8.92
2024-12-06 06:37:23,465 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=80.6 pTM=0.747 ipTM=0.716 tol=1.87
2024-12-06 06:38:07,770 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=80.9 pTM=0.745 ipTM=0.724 tol=0.951
2024-12-06 06:38:52,038 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=80.5 pTM=0.746 ipTM=0.729 tol=0.868
2024-12-06 06:39:36,326 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=80.8 pTM=0.743 ipTM=0.727 tol=0.927
2024-12-06 06:40:20,657 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=81.2 pTM=0.762 ipTM=0.744 tol=1.23
2024-12-06 06:41:05,080 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=81 pTM=0.746 ipTM=0.731 tol=1.62
2024-12-06 06:41:49,492 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=81.3 pTM=0.762 ipTM=0.748 tol=1.89
2024-12-06 06:42:33,915 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=80.9 pTM=0.744 ipTM=0.729 tol=0.941
2024-12-06 06:43:18,311 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=81.1 pTM=0.756 ipTM=0.74 tol=1.58
2024-12-06 06:44:02,735 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.9 pTM=0.741 ipTM=0.726 tol=0.911
2024-12-06 06:44:47,120 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=81.1 pTM=0.756 ipTM=0.742 tol=0.994
2024-12-06 06:45:31,507 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=81 pTM=0.742 ipTM=0.728 tol=1.64
2024-12-06 06:46:15,934 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=81.2 pTM=0.763 ipTM=0.748 tol=2.07
2024-12-06 06:47:00,343 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=81.2 pTM=0.751 ipTM=0.735 tol=2.08
2024-12-06 06:47:00,344 alphafold2_multimer_v3_model_4_seed_000 took 1376.8s (30 recycles)
2024-12-06 06:47:45,708 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.2 pTM=0.543 ipTM=0.37
2024-12-06 06:48:30,047 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=73.7 pTM=0.487 ipTM=0.311 tol=7.74
2024-12-06 06:49:14,455 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.1 pTM=0.486 ipTM=0.298 tol=3.71
2024-12-06 06:49:58,856 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=73.8 pTM=0.484 ipTM=0.323 tol=14.8
2024-12-06 06:50:43,203 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=74.6 pTM=0.5 ipTM=0.353 tol=2.64
2024-12-06 06:51:27,607 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=74.7 pTM=0.5 ipTM=0.404 tol=2.22
2024-12-06 06:52:11,967 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.6 pTM=0.511 ipTM=0.451 tol=8.73
2024-12-06 06:52:56,298 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.2 pTM=0.504 ipTM=0.462 tol=3.81
2024-12-06 06:53:40,552 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.8 pTM=0.683 ipTM=0.632 tol=7.35
2024-12-06 06:54:24,781 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=77.8 pTM=0.663 ipTM=0.621 tol=1.24
2024-12-06 06:55:09,045 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.4 pTM=0.674 ipTM=0.638 tol=0.561
2024-12-06 06:55:53,275 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.1 pTM=0.668 ipTM=0.632 tol=0.664
2024-12-06 06:56:37,553 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=77.7 pTM=0.66 ipTM=0.622 tol=0.938
2024-12-06 06:57:21,853 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=77.8 pTM=0.659 ipTM=0.621 tol=0.589
2024-12-06 06:58:06,142 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77.6 pTM=0.66 ipTM=0.624 tol=0.479
2024-12-06 06:58:06,143 alphafold2_multimer_v3_model_5_seed_000 took 664.8s (14 recycles)
2024-12-06 06:58:07,163 reranking models by 'multimer' metric
2024-12-06 06:58:11,064 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 06:59:24,906 Relaxation took 77.7s
2024-12-06 06:59:24,906 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=81.2 pTM=0.751 ipTM=0.735
2024-12-06 07:00:34,753 Relaxation took 69.8s
2024-12-06 07:00:34,754 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.2 pTM=0.73 ipTM=0.685
2024-12-06 07:01:55,618 Relaxation took 80.9s
2024-12-06 07:01:55,618 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.8 pTM=0.711 ipTM=0.682
2024-12-06 07:02:33,488 Relaxation took 37.9s
2024-12-06 07:02:33,488 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.9 pTM=0.726 ipTM=0.675
2024-12-06 07:04:12,622 Relaxation took 99.1s
2024-12-06 07:04:12,622 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.6 pTM=0.66 ipTM=0.624
2024-12-06 07:04:15,375 Done