2024-12-06 07:10:01,832 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 07:10:02,144 Running on GPU
2024-12-06 07:10:05,498 Found 6 citations for tools or databases
2024-12-06 07:10:05,498 Query 1/1: FEM1B_ALDH1B1 (length 1144)
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2024-12-06 07:22:33,035 Setting max_seq=508, max_extra_seq=2048
2024-12-06 07:24:50,856 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=90.9 pTM=0.521 ipTM=0.142
2024-12-06 07:25:17,273 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=90.8 pTM=0.521 ipTM=0.162 tol=7.64
2024-12-06 07:25:43,752 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=90.9 pTM=0.526 ipTM=0.175 tol=7.5
2024-12-06 07:26:10,271 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=90.9 pTM=0.527 ipTM=0.196 tol=2.23
2024-12-06 07:26:36,869 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=91.1 pTM=0.53 ipTM=0.21 tol=1.14
2024-12-06 07:27:03,500 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=91.1 pTM=0.53 ipTM=0.218 tol=1.42
2024-12-06 07:27:30,147 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=91 pTM=0.53 ipTM=0.232 tol=1.44
2024-12-06 07:27:56,838 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=91.1 pTM=0.529 ipTM=0.233 tol=1.17
2024-12-06 07:28:23,526 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=91 pTM=0.53 ipTM=0.226 tol=0.733
2024-12-06 07:28:50,262 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=90.9 pTM=0.526 ipTM=0.218 tol=0.866
2024-12-06 07:29:16,999 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=91 pTM=0.527 ipTM=0.215 tol=0.669
2024-12-06 07:29:43,726 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=90.9 pTM=0.527 ipTM=0.219 tol=1.86
2024-12-06 07:30:10,461 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=90.8 pTM=0.526 ipTM=0.214 tol=1.5
2024-12-06 07:30:37,196 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=90.8 pTM=0.526 ipTM=0.215 tol=0.422
2024-12-06 07:30:37,197 alphafold2_multimer_v3_model_1_seed_000 took 480.8s (13 recycles)
2024-12-06 07:31:04,800 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=91.6 pTM=0.526 ipTM=0.175
2024-12-06 07:31:31,579 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=91.4 pTM=0.528 ipTM=0.267 tol=8.67
2024-12-06 07:31:58,396 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=91.4 pTM=0.528 ipTM=0.197 tol=3.62
2024-12-06 07:32:25,209 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=91.6 pTM=0.527 ipTM=0.157 tol=1.58
2024-12-06 07:32:52,034 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=91.6 pTM=0.529 ipTM=0.16 tol=1.28
2024-12-06 07:33:18,814 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=91.8 pTM=0.528 ipTM=0.169 tol=1.57
2024-12-06 07:33:45,588 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=91.6 pTM=0.528 ipTM=0.168 tol=1.49
2024-12-06 07:34:12,342 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=91.8 pTM=0.528 ipTM=0.186 tol=0.812
2024-12-06 07:34:39,082 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=91.6 pTM=0.528 ipTM=0.2 tol=0.537
2024-12-06 07:35:05,856 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=91.8 pTM=0.528 ipTM=0.197 tol=1.04
2024-12-06 07:35:32,661 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=91.7 pTM=0.528 ipTM=0.192 tol=1.16
2024-12-06 07:35:59,500 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=91.6 pTM=0.528 ipTM=0.189 tol=0.818
2024-12-06 07:36:26,351 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=91.6 pTM=0.526 ipTM=0.193 tol=1.28
2024-12-06 07:36:53,211 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=91.6 pTM=0.526 ipTM=0.202 tol=0.599
2024-12-06 07:37:20,054 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=91.6 pTM=0.53 ipTM=0.209 tol=1.06
2024-12-06 07:37:46,889 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=91.6 pTM=0.528 ipTM=0.179 tol=0.603
2024-12-06 07:38:13,754 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=91.6 pTM=0.527 ipTM=0.166 tol=1.04
2024-12-06 07:38:40,580 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=91.8 pTM=0.526 ipTM=0.178 tol=1.57
2024-12-06 07:39:07,389 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=91.5 pTM=0.525 ipTM=0.166 tol=1.59
2024-12-06 07:39:34,215 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=91.6 pTM=0.528 ipTM=0.171 tol=0.927
2024-12-06 07:40:00,997 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=91.4 pTM=0.528 ipTM=0.172 tol=0.973
2024-12-06 07:40:27,801 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=91.6 pTM=0.528 ipTM=0.198 tol=1.27
2024-12-06 07:40:54,590 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=91.4 pTM=0.526 ipTM=0.199 tol=0.587
2024-12-06 07:41:21,366 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=91.6 pTM=0.528 ipTM=0.198 tol=0.932
2024-12-06 07:41:48,148 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=91.4 pTM=0.526 ipTM=0.179 tol=1.15
2024-12-06 07:42:14,947 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=91.7 pTM=0.524 ipTM=0.171 tol=2.53
2024-12-06 07:42:41,706 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=91.4 pTM=0.526 ipTM=0.175 tol=1.6
2024-12-06 07:43:08,479 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=91.4 pTM=0.527 ipTM=0.193 tol=0.955
2024-12-06 07:43:35,237 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=91.5 pTM=0.529 ipTM=0.203 tol=0.618
2024-12-06 07:44:02,017 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=91.6 pTM=0.527 ipTM=0.186 tol=0.735
2024-12-06 07:44:28,793 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=91.8 pTM=0.527 ipTM=0.174 tol=1.96
2024-12-06 07:44:28,794 alphafold2_multimer_v3_model_2_seed_000 took 830.8s (30 recycles)
2024-12-06 07:44:56,243 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=90.7 pTM=0.526 ipTM=0.167
2024-12-06 07:45:23,039 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=91.3 pTM=0.535 ipTM=0.226 tol=5.22
2024-12-06 07:45:49,822 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=91.1 pTM=0.53 ipTM=0.436 tol=3.33
2024-12-06 07:46:16,545 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=91.1 pTM=0.529 ipTM=0.369 tol=2.7
2024-12-06 07:46:43,296 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=91.3 pTM=0.534 ipTM=0.371 tol=0.785
2024-12-06 07:47:10,023 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=91.3 pTM=0.532 ipTM=0.37 tol=0.552
2024-12-06 07:47:36,750 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=91.2 pTM=0.531 ipTM=0.369 tol=0.324
2024-12-06 07:47:36,751 alphafold2_multimer_v3_model_3_seed_000 took 187.2s (6 recycles)
2024-12-06 07:48:04,131 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=89.7 pTM=0.522 ipTM=0.158
2024-12-06 07:48:30,843 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=90.2 pTM=0.532 ipTM=0.182 tol=11.5
2024-12-06 07:48:57,613 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=90.5 pTM=0.534 ipTM=0.168 tol=3.06
2024-12-06 07:49:24,360 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=90.4 pTM=0.533 ipTM=0.165 tol=1.74
2024-12-06 07:49:51,138 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=90.6 pTM=0.535 ipTM=0.166 tol=0.591
2024-12-06 07:50:17,902 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=90.6 pTM=0.535 ipTM=0.168 tol=0.558
2024-12-06 07:50:44,607 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=90.5 pTM=0.535 ipTM=0.175 tol=1.13
2024-12-06 07:51:11,325 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=90.6 pTM=0.535 ipTM=0.194 tol=0.516
2024-12-06 07:51:38,023 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=90.6 pTM=0.535 ipTM=0.184 tol=1.14
2024-12-06 07:52:04,712 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=90.6 pTM=0.535 ipTM=0.181 tol=0.474
2024-12-06 07:52:04,713 alphafold2_multimer_v3_model_4_seed_000 took 267.2s (9 recycles)
2024-12-06 07:52:32,039 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=89.1 pTM=0.513 ipTM=0.152
2024-12-06 07:52:58,744 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=90.4 pTM=0.525 ipTM=0.225 tol=6.83
2024-12-06 07:53:25,409 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=90.6 pTM=0.525 ipTM=0.217 tol=4.47
2024-12-06 07:53:52,080 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=90.9 pTM=0.528 ipTM=0.337 tol=1.98
2024-12-06 07:54:18,776 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=90.9 pTM=0.534 ipTM=0.381 tol=3.2
2024-12-06 07:54:45,416 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=90.9 pTM=0.533 ipTM=0.386 tol=1.3
2024-12-06 07:55:12,065 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=91 pTM=0.534 ipTM=0.366 tol=1.41
2024-12-06 07:55:38,742 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=91.2 pTM=0.533 ipTM=0.355 tol=0.658
2024-12-06 07:56:05,433 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=91 pTM=0.532 ipTM=0.345 tol=0.864
2024-12-06 07:56:32,148 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=91.1 pTM=0.532 ipTM=0.351 tol=0.528
2024-12-06 07:56:58,845 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=91.1 pTM=0.531 ipTM=0.343 tol=0.732
2024-12-06 07:57:25,600 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=90.9 pTM=0.53 ipTM=0.337 tol=0.277
2024-12-06 07:57:25,601 alphafold2_multimer_v3_model_5_seed_000 took 320.1s (11 recycles)
2024-12-06 07:57:26,384 reranking models by 'multimer' metric
2024-12-06 07:57:29,722 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 07:58:14,570 Relaxation took 48.2s
2024-12-06 07:58:14,570 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=91.2 pTM=0.531 ipTM=0.369
2024-12-06 07:59:24,365 Relaxation took 69.8s
2024-12-06 07:59:24,365 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=90.9 pTM=0.53 ipTM=0.337
2024-12-06 08:00:04,154 Relaxation took 39.8s
2024-12-06 08:00:04,154 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=90.8 pTM=0.526 ipTM=0.215
2024-12-06 08:00:53,822 Relaxation took 49.7s
2024-12-06 08:00:53,822 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=90.6 pTM=0.535 ipTM=0.181
2024-12-06 08:01:33,980 Relaxation took 40.2s
2024-12-06 08:01:33,980 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=91.8 pTM=0.527 ipTM=0.174
2024-12-06 08:01:36,217 Done