2024-12-06 07:30:12,090 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 07:30:12,392 Running on GPU
2024-12-06 07:30:15,922 Found 6 citations for tools or databases
2024-12-06 07:30:15,922 Query 1/1: FEM1B_CAMKMT (length 950)
2024-12-06 07:30:16,211 Sleeping for 6s. Reason: PENDING
2024-12-06 07:30:22,469 Sleeping for 7s. Reason: RUNNING
2024-12-06 07:30:29,734 Sleeping for 10s. Reason: RUNNING
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2024-12-06 07:30:51,515 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:31:00,771 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:31:10,033 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:31:19,295 Sleeping for 5s. Reason: RUNNING
2024-12-06 07:31:24,553 Sleeping for 7s. Reason: RUNNING
2024-12-06 07:31:31,809 Sleeping for 7s. Reason: RUNNING
2024-12-06 07:31:39,067 Sleeping for 8s. Reason: RUNNING
2024-12-06 07:31:47,325 Sleeping for 5s. Reason: RUNNING
2024-12-06 07:31:52,578 Sleeping for 10s. Reason: RUNNING
2024-12-06 07:32:02,845 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:32:12,102 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:32:21,375 Sleeping for 10s. Reason: RUNNING
2024-12-06 07:32:32,972 Sleeping for 7s. Reason: PENDING
2024-12-06 07:32:40,228 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:32:49,491 Sleeping for 8s. Reason: RUNNING
2024-12-06 07:32:57,749 Sleeping for 6s. Reason: RUNNING
2024-12-06 07:33:04,007 Sleeping for 7s. Reason: RUNNING
2024-12-06 07:33:11,261 Sleeping for 6s. Reason: RUNNING
2024-12-06 07:33:17,516 Sleeping for 7s. Reason: RUNNING
2024-12-06 07:33:24,774 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:33:34,033 Sleeping for 8s. Reason: RUNNING
2024-12-06 07:33:42,295 Sleeping for 9s. Reason: RUNNING
2024-12-06 07:33:51,576 Sleeping for 6s. Reason: RUNNING
2024-12-06 07:34:00,142 Setting max_seq=508, max_extra_seq=2048
2024-12-06 07:36:44,692 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=84.8 pTM=0.605 ipTM=0.183
2024-12-06 07:37:05,116 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=85.3 pTM=0.602 ipTM=0.208 tol=3.28
2024-12-06 07:37:25,582 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=85.6 pTM=0.604 ipTM=0.204 tol=3.09
2024-12-06 07:37:46,097 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=85.8 pTM=0.606 ipTM=0.235 tol=2.02
2024-12-06 07:38:06,664 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.7 pTM=0.604 ipTM=0.238 tol=1.76
2024-12-06 07:38:27,239 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.4 pTM=0.605 ipTM=0.23 tol=0.888
2024-12-06 07:38:47,826 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.2 pTM=0.603 ipTM=0.234 tol=1.35
2024-12-06 07:39:08,447 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85.1 pTM=0.607 ipTM=0.232 tol=0.379
2024-12-06 07:39:08,448 alphafold2_multimer_v3_model_1_seed_000 took 303.3s (7 recycles)
2024-12-06 07:39:29,666 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=83.4 pTM=0.626 ipTM=0.194
2024-12-06 07:39:50,328 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.8 pTM=0.62 ipTM=0.203 tol=5
2024-12-06 07:40:11,005 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=83.8 pTM=0.616 ipTM=0.184 tol=2.96
2024-12-06 07:40:31,692 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.1 pTM=0.616 ipTM=0.194 tol=3.04
2024-12-06 07:40:52,369 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.2 pTM=0.612 ipTM=0.195 tol=2.42
2024-12-06 07:41:13,053 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.3 pTM=0.609 ipTM=0.2 tol=2
2024-12-06 07:41:33,743 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.7 pTM=0.608 ipTM=0.199 tol=1.5
2024-12-06 07:41:54,432 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.8 pTM=0.608 ipTM=0.204 tol=0.999
2024-12-06 07:42:15,127 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.8 pTM=0.607 ipTM=0.206 tol=0.708
2024-12-06 07:42:35,806 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=84.8 pTM=0.608 ipTM=0.205 tol=1.08
2024-12-06 07:42:56,483 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=84.8 pTM=0.608 ipTM=0.206 tol=1.02
2024-12-06 07:43:17,160 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=84.6 pTM=0.611 ipTM=0.207 tol=1.78
2024-12-06 07:43:37,840 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=84.6 pTM=0.61 ipTM=0.205 tol=1.88
2024-12-06 07:43:58,518 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=84.8 pTM=0.611 ipTM=0.208 tol=0.69
2024-12-06 07:44:19,198 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=84.9 pTM=0.613 ipTM=0.212 tol=0.708
2024-12-06 07:44:39,863 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=84.8 pTM=0.61 ipTM=0.213 tol=0.919
2024-12-06 07:45:00,546 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=85.1 pTM=0.608 ipTM=0.206 tol=0.542
2024-12-06 07:45:21,207 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=85.2 pTM=0.609 ipTM=0.208 tol=0.74
2024-12-06 07:45:41,880 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=85.2 pTM=0.608 ipTM=0.203 tol=0.741
2024-12-06 07:46:02,558 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=85.3 pTM=0.606 ipTM=0.215 tol=2.71
2024-12-06 07:46:23,241 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=85.4 pTM=0.605 ipTM=0.216 tol=1.56
2024-12-06 07:46:43,936 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=85.7 pTM=0.606 ipTM=0.203 tol=1.5
2024-12-06 07:47:04,641 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=85.8 pTM=0.606 ipTM=0.211 tol=2.18
2024-12-06 07:47:25,347 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=85.8 pTM=0.607 ipTM=0.204 tol=1.22
2024-12-06 07:47:46,063 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=85.8 pTM=0.608 ipTM=0.203 tol=0.857
2024-12-06 07:48:06,753 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=85.5 pTM=0.606 ipTM=0.197 tol=1.33
2024-12-06 07:48:27,441 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=85.2 pTM=0.609 ipTM=0.196 tol=1.68
2024-12-06 07:48:48,120 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=85.1 pTM=0.608 ipTM=0.197 tol=2.15
2024-12-06 07:49:08,802 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=85.2 pTM=0.605 ipTM=0.201 tol=1.08
2024-12-06 07:49:29,488 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=85.3 pTM=0.606 ipTM=0.201 tol=0.962
2024-12-06 07:49:50,183 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=85.6 pTM=0.604 ipTM=0.201 tol=1.94
2024-12-06 07:49:50,183 alphafold2_multimer_v3_model_2_seed_000 took 641.2s (30 recycles)
2024-12-06 07:50:11,366 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=82.4 pTM=0.602 ipTM=0.183
2024-12-06 07:50:31,985 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=83.1 pTM=0.609 ipTM=0.234 tol=18.5
2024-12-06 07:50:52,676 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=82.4 pTM=0.61 ipTM=0.165 tol=17.5
2024-12-06 07:51:13,321 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=82.4 pTM=0.607 ipTM=0.157 tol=0.995
2024-12-06 07:51:33,965 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=82.8 pTM=0.608 ipTM=0.162 tol=6.3
2024-12-06 07:51:54,636 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=82.8 pTM=0.612 ipTM=0.194 tol=3.46
2024-12-06 07:52:15,309 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=82.9 pTM=0.613 ipTM=0.207 tol=0.959
2024-12-06 07:52:35,957 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=82.8 pTM=0.614 ipTM=0.217 tol=3.3
2024-12-06 07:52:56,623 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=82.8 pTM=0.618 ipTM=0.211 tol=1.56
2024-12-06 07:53:17,287 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=82.8 pTM=0.621 ipTM=0.208 tol=1.16
2024-12-06 07:53:37,965 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=82.9 pTM=0.616 ipTM=0.2 tol=1.82
2024-12-06 07:53:58,608 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=82.6 pTM=0.62 ipTM=0.212 tol=1.92
2024-12-06 07:54:19,260 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=82.8 pTM=0.622 ipTM=0.225 tol=0.541
2024-12-06 07:54:39,914 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=82.8 pTM=0.622 ipTM=0.22 tol=0.254
2024-12-06 07:54:39,915 alphafold2_multimer_v3_model_3_seed_000 took 289.2s (13 recycles)
2024-12-06 07:55:01,113 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=81.5 pTM=0.591 ipTM=0.222
2024-12-06 07:55:21,792 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.8 pTM=0.605 ipTM=0.228 tol=5.07
2024-12-06 07:55:42,465 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.1 pTM=0.604 ipTM=0.188 tol=2.46
2024-12-06 07:56:03,141 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=82.2 pTM=0.607 ipTM=0.203 tol=3.53
2024-12-06 07:56:23,806 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.4 pTM=0.607 ipTM=0.208 tol=2.65
2024-12-06 07:56:44,466 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=82.4 pTM=0.608 ipTM=0.196 tol=2.1
2024-12-06 07:57:05,116 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=82.2 pTM=0.606 ipTM=0.208 tol=1.43
2024-12-06 07:57:25,749 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=82.1 pTM=0.607 ipTM=0.217 tol=1.39
2024-12-06 07:57:46,395 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=82.1 pTM=0.607 ipTM=0.214 tol=0.512
2024-12-06 07:58:07,023 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=81.8 pTM=0.607 ipTM=0.21 tol=1.58
2024-12-06 07:58:27,673 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=82.1 pTM=0.611 ipTM=0.199 tol=1.52
2024-12-06 07:58:48,316 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=81.9 pTM=0.609 ipTM=0.204 tol=1.62
2024-12-06 07:59:08,949 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=81.9 pTM=0.61 ipTM=0.211 tol=1.42
2024-12-06 07:59:29,589 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=81.8 pTM=0.606 ipTM=0.207 tol=1.79
2024-12-06 07:59:50,237 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=82.1 pTM=0.61 ipTM=0.207 tol=1.63
2024-12-06 08:00:10,869 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=81.7 pTM=0.605 ipTM=0.199 tol=3.24
2024-12-06 08:00:31,503 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=81.6 pTM=0.612 ipTM=0.201 tol=2.92
2024-12-06 08:00:52,144 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=81.8 pTM=0.607 ipTM=0.192 tol=1.03
2024-12-06 08:01:12,782 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=81.6 pTM=0.607 ipTM=0.192 tol=1.36
2024-12-06 08:01:33,426 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=81.8 pTM=0.606 ipTM=0.187 tol=3.42
2024-12-06 08:01:54,060 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=81.7 pTM=0.612 ipTM=0.201 tol=5.3
2024-12-06 08:02:14,688 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=81.8 pTM=0.607 ipTM=0.185 tol=1.27
2024-12-06 08:02:35,333 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=81.8 pTM=0.606 ipTM=0.187 tol=1.24
2024-12-06 08:02:55,967 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=81.6 pTM=0.604 ipTM=0.179 tol=1.31
2024-12-06 08:03:16,606 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=81.8 pTM=0.607 ipTM=0.19 tol=0.628
2024-12-06 08:03:37,217 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=81.5 pTM=0.601 ipTM=0.181 tol=0.436
2024-12-06 08:03:37,218 alphafold2_multimer_v3_model_4_seed_000 took 536.7s (25 recycles)
2024-12-06 08:03:58,407 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=81.9 pTM=0.612 ipTM=0.23
2024-12-06 08:04:19,049 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.2 pTM=0.614 ipTM=0.224 tol=1.91
2024-12-06 08:04:39,709 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=82.4 pTM=0.619 ipTM=0.237 tol=1.53
2024-12-06 08:05:00,369 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.5 pTM=0.614 ipTM=0.211 tol=1.72
2024-12-06 08:05:21,012 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.6 pTM=0.618 ipTM=0.22 tol=0.549
2024-12-06 08:05:41,684 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82.8 pTM=0.616 ipTM=0.203 tol=1.1
2024-12-06 08:06:02,358 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=82.7 pTM=0.618 ipTM=0.209 tol=0.728
2024-12-06 08:06:23,031 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=82.8 pTM=0.615 ipTM=0.197 tol=0.795
2024-12-06 08:06:43,701 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=82.8 pTM=0.617 ipTM=0.2 tol=0.41
2024-12-06 08:06:43,701 alphafold2_multimer_v3_model_5_seed_000 took 185.9s (8 recycles)
2024-12-06 08:06:44,258 reranking models by 'multimer' metric
2024-12-06 08:06:47,890 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 08:16:06,790 Relaxation took 562.5s
2024-12-06 08:16:06,791 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85.1 pTM=0.607 ipTM=0.232
2024-12-06 08:18:01,721 Relaxation took 114.9s
2024-12-06 08:18:01,721 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=82.8 pTM=0.622 ipTM=0.22
2024-12-06 08:18:58,182 Relaxation took 56.5s
2024-12-06 08:18:58,182 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=82.8 pTM=0.617 ipTM=0.2
2024-12-06 08:20:24,927 Relaxation took 86.7s
2024-12-06 08:20:24,927 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=85.6 pTM=0.604 ipTM=0.201
2024-12-06 08:22:10,933 Relaxation took 106.0s
2024-12-06 08:22:10,933 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=81.5 pTM=0.601 ipTM=0.181
2024-12-06 08:22:12,635 Done