2024-12-06 08:18:08,725 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 08:18:09,085 Running on GPU
2024-12-06 08:18:12,752 Found 6 citations for tools or databases
2024-12-06 08:18:12,752 Query 1/1: HDAC4_YWHAG (length 1331)
2024-12-06 08:18:13,066 Sleeping for 10s. Reason: PENDING
2024-12-06 08:18:23,325 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:18:33,592 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:18:38,856 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:18:49,116 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:18:55,377 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:19:05,634 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:19:12,892 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:19:20,151 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:19:29,403 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:19:38,665 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:19:44,927 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:19:53,183 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:19:59,437 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:20:07,696 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:20:15,950 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:20:22,208 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:20:27,472 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:20:36,730 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:20:47,219 Sleeping for 10s. Reason: PENDING
2024-12-06 08:20:57,487 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:21:06,749 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:21:15,009 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:21:23,265 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:21:28,524 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:21:38,789 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:21:46,048 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:21:56,313 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:22:02,571 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:22:08,832 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:22:25,373 Setting max_seq=508, max_extra_seq=2048
2024-12-06 08:26:40,089 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=53.5 pTM=0.412 ipTM=0.774
2024-12-06 08:27:28,552 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=54.4 pTM=0.398 ipTM=0.615 tol=15.1
2024-12-06 08:28:17,206 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=54.6 pTM=0.403 ipTM=0.455 tol=11.6
2024-12-06 08:29:05,983 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=54.6 pTM=0.404 ipTM=0.534 tol=8.38
2024-12-06 08:29:54,856 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=54.7 pTM=0.403 ipTM=0.53 tol=8.6
2024-12-06 08:30:43,762 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=54.7 pTM=0.405 ipTM=0.464 tol=7.89
2024-12-06 08:31:32,699 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=54.6 pTM=0.406 ipTM=0.521 tol=8
2024-12-06 08:32:21,633 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=54.6 pTM=0.407 ipTM=0.486 tol=5.51
2024-12-06 08:33:10,572 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54.7 pTM=0.406 ipTM=0.498 tol=6.45
2024-12-06 08:33:59,505 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=54.6 pTM=0.407 ipTM=0.525 tol=5.5
2024-12-06 08:34:48,437 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=54.6 pTM=0.406 ipTM=0.453 tol=6.07
2024-12-06 08:35:37,318 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=54.7 pTM=0.406 ipTM=0.52 tol=5.86
2024-12-06 08:36:26,168 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=54.7 pTM=0.406 ipTM=0.535 tol=5.89
2024-12-06 08:37:15,014 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.7 pTM=0.406 ipTM=0.465 tol=8.83
2024-12-06 08:38:03,907 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.6 pTM=0.406 ipTM=0.467 tol=8.38
2024-12-06 08:38:52,728 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=54.7 pTM=0.408 ipTM=0.504 tol=9.42
2024-12-06 08:39:41,518 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=54.5 pTM=0.409 ipTM=0.458 tol=8.21
2024-12-06 08:40:30,325 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=54.5 pTM=0.409 ipTM=0.5 tol=5
2024-12-06 08:41:19,124 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54.5 pTM=0.409 ipTM=0.475 tol=7.89
2024-12-06 08:42:07,934 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.3 pTM=0.408 ipTM=0.486 tol=6.94
2024-12-06 08:42:56,760 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.5 pTM=0.409 ipTM=0.507 tol=2.95
2024-12-06 08:43:45,568 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=54.5 pTM=0.408 ipTM=0.439 tol=8.1
2024-12-06 08:44:34,390 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.5 pTM=0.409 ipTM=0.498 tol=2.24
2024-12-06 08:45:23,218 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54.5 pTM=0.409 ipTM=0.505 tol=2.96
2024-12-06 08:46:12,052 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=54.5 pTM=0.408 ipTM=0.502 tol=6.78
2024-12-06 08:47:00,883 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54.4 pTM=0.408 ipTM=0.493 tol=3.67
2024-12-06 08:47:49,740 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=54.5 pTM=0.41 ipTM=0.489 tol=7.44
2024-12-06 08:48:38,565 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=54.3 pTM=0.408 ipTM=0.491 tol=6.91
2024-12-06 08:49:27,311 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=54.5 pTM=0.409 ipTM=0.534 tol=2.34
2024-12-06 08:50:16,039 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54.5 pTM=0.409 ipTM=0.464 tol=6.91
2024-12-06 08:51:04,726 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=54.5 pTM=0.409 ipTM=0.516 tol=6.91
2024-12-06 08:51:04,728 alphafold2_multimer_v3_model_1_seed_000 took 1712.6s (30 recycles)
2024-12-06 08:51:54,807 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=55.3 pTM=0.412 ipTM=0.844
2024-12-06 08:52:43,662 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=55.7 pTM=0.411 ipTM=0.853 tol=23.3
2024-12-06 08:53:32,480 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=56.1 pTM=0.409 ipTM=0.78 tol=15.2
2024-12-06 08:54:21,309 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=55.4 pTM=0.406 ipTM=0.625 tol=12
2024-12-06 08:55:10,117 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=55.2 pTM=0.406 ipTM=0.456 tol=8.8
2024-12-06 08:55:59,017 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55.5 pTM=0.41 ipTM=0.633 tol=7.75
2024-12-06 08:56:47,890 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=55.5 pTM=0.408 ipTM=0.65 tol=5.52
2024-12-06 08:57:36,724 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=55.3 pTM=0.406 ipTM=0.565 tol=8.98
2024-12-06 08:58:25,575 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=55.4 pTM=0.407 ipTM=0.659 tol=7.44
2024-12-06 08:59:14,392 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=55.7 pTM=0.407 ipTM=0.677 tol=6.48
2024-12-06 09:00:03,208 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=55.4 pTM=0.405 ipTM=0.556 tol=6.9
2024-12-06 09:00:52,024 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=55.3 pTM=0.406 ipTM=0.552 tol=5.14
2024-12-06 09:01:40,871 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=55.9 pTM=0.406 ipTM=0.72 tol=4.23
2024-12-06 09:02:29,690 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=55.5 pTM=0.404 ipTM=0.483 tol=5.58
2024-12-06 09:03:18,522 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=55.4 pTM=0.406 ipTM=0.451 tol=4.8
2024-12-06 09:04:07,361 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=55.9 pTM=0.408 ipTM=0.738 tol=5.41
2024-12-06 09:04:56,176 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=55.9 pTM=0.408 ipTM=0.688 tol=5.9
2024-12-06 09:05:45,012 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=55.6 pTM=0.406 ipTM=0.503 tol=4.15
2024-12-06 09:06:33,828 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=55.5 pTM=0.406 ipTM=0.421 tol=5.94
2024-12-06 09:07:22,630 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=55.5 pTM=0.407 ipTM=0.625 tol=3.17
2024-12-06 09:08:11,446 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=55.5 pTM=0.406 ipTM=0.526 tol=3.5
2024-12-06 09:09:00,253 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=55.4 pTM=0.406 ipTM=0.469 tol=2.73
2024-12-06 09:09:49,093 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=55.6 pTM=0.407 ipTM=0.673 tol=3.35
2024-12-06 09:10:37,913 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=55.8 pTM=0.407 ipTM=0.695 tol=5.83
2024-12-06 09:11:26,737 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=55.6 pTM=0.408 ipTM=0.665 tol=3.13
2024-12-06 09:12:15,561 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.6 pTM=0.407 ipTM=0.637 tol=7.55
2024-12-06 09:13:04,388 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=55.7 pTM=0.408 ipTM=0.603 tol=3.01
2024-12-06 09:13:53,192 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=55.4 pTM=0.406 ipTM=0.44 tol=5.74
2024-12-06 09:14:42,032 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=55.5 pTM=0.407 ipTM=0.536 tol=4.16
2024-12-06 09:15:30,871 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=55.8 pTM=0.406 ipTM=0.67 tol=3.43
2024-12-06 09:16:19,715 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=55.6 pTM=0.406 ipTM=0.49 tol=5.04
2024-12-06 09:16:19,716 alphafold2_multimer_v3_model_2_seed_000 took 1513.6s (30 recycles)
2024-12-06 09:17:09,889 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=53.9 pTM=0.422 ipTM=0.338
2024-12-06 09:17:58,857 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=55.1 pTM=0.41 ipTM=0.813 tol=18.2
2024-12-06 09:18:47,817 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=54.9 pTM=0.412 ipTM=0.625 tol=19.4
2024-12-06 09:19:36,831 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=54.6 pTM=0.415 ipTM=0.49 tol=11.4
2024-12-06 09:20:25,808 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=54.9 pTM=0.418 ipTM=0.522 tol=9.35
2024-12-06 09:21:14,776 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.2 pTM=0.423 ipTM=0.492 tol=9.26
2024-12-06 09:22:03,742 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.1 pTM=0.417 ipTM=0.577 tol=11.8
2024-12-06 09:22:52,715 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55 pTM=0.421 ipTM=0.488 tol=6.36
2024-12-06 09:23:41,641 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=55 pTM=0.416 ipTM=0.59 tol=7.29
2024-12-06 09:24:30,583 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55 pTM=0.415 ipTM=0.465 tol=10.8
2024-12-06 09:25:19,484 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=54.8 pTM=0.411 ipTM=0.533 tol=10.7
2024-12-06 09:26:08,405 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.1 pTM=0.413 ipTM=0.482 tol=7.22
2024-12-06 09:26:57,292 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=54.9 pTM=0.413 ipTM=0.474 tol=6.55
2024-12-06 09:27:46,218 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.1 pTM=0.413 ipTM=0.481 tol=5.56
2024-12-06 09:28:35,129 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.2 pTM=0.412 ipTM=0.505 tol=7.99
2024-12-06 09:29:24,059 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55.2 pTM=0.413 ipTM=0.533 tol=5.28
2024-12-06 09:30:12,937 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.2 pTM=0.415 ipTM=0.516 tol=6.31
2024-12-06 09:31:01,874 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.2 pTM=0.414 ipTM=0.563 tol=5.09
2024-12-06 09:31:50,781 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=55.1 pTM=0.41 ipTM=0.5 tol=9.02
2024-12-06 09:32:39,740 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.3 pTM=0.415 ipTM=0.513 tol=9.6
2024-12-06 09:33:28,635 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=55.1 pTM=0.415 ipTM=0.529 tol=6.02
2024-12-06 09:34:17,535 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=55.2 pTM=0.417 ipTM=0.512 tol=3.66
2024-12-06 09:35:06,416 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=55.1 pTM=0.413 ipTM=0.551 tol=4.35
2024-12-06 09:35:55,329 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55.2 pTM=0.416 ipTM=0.51 tol=4.39
2024-12-06 09:36:44,202 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.2 pTM=0.415 ipTM=0.589 tol=4.89
2024-12-06 09:37:33,118 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.1 pTM=0.418 ipTM=0.547 tol=4.43
2024-12-06 09:38:22,070 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.1 pTM=0.417 ipTM=0.519 tol=4.41
2024-12-06 09:39:11,005 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55.2 pTM=0.418 ipTM=0.572 tol=2.8
2024-12-06 09:39:59,905 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55 pTM=0.42 ipTM=0.571 tol=2.94
2024-12-06 09:40:48,850 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.2 pTM=0.418 ipTM=0.446 tol=4.21
2024-12-06 09:41:37,795 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.2 pTM=0.42 ipTM=0.612 tol=3.29
2024-12-06 09:41:37,796 alphafold2_multimer_v3_model_3_seed_000 took 1516.7s (30 recycles)
2024-12-06 09:42:28,014 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=52.4 pTM=0.419 ipTM=0.289
2024-12-06 09:43:17,014 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=53.6 pTM=0.404 ipTM=0.795 tol=21.7
2024-12-06 09:44:06,119 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=53.8 pTM=0.398 ipTM=0.789 tol=20.8
2024-12-06 09:44:55,251 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=53.7 pTM=0.394 ipTM=0.72 tol=13.1
2024-12-06 09:45:44,354 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=53.2 pTM=0.399 ipTM=0.5 tol=16.4
2024-12-06 09:46:33,540 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=53.5 pTM=0.394 ipTM=0.414 tol=12.5
2024-12-06 09:47:22,617 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=53.2 pTM=0.398 ipTM=0.437 tol=9.02
2024-12-06 09:48:11,686 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=53.3 pTM=0.396 ipTM=0.482 tol=9.98
2024-12-06 09:49:00,750 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=53.2 pTM=0.395 ipTM=0.451 tol=10.3
2024-12-06 09:49:49,792 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=53.3 pTM=0.395 ipTM=0.453 tol=8.62
2024-12-06 09:50:38,868 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=53.2 pTM=0.395 ipTM=0.5 tol=11.4
2024-12-06 09:51:27,930 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=53.4 pTM=0.394 ipTM=0.461 tol=9.47
2024-12-06 09:52:16,888 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=53.1 pTM=0.396 ipTM=0.464 tol=10.4
2024-12-06 09:53:05,899 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=53.3 pTM=0.394 ipTM=0.397 tol=8.59
2024-12-06 09:53:54,863 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=53.1 pTM=0.395 ipTM=0.358 tol=10.4
2024-12-06 09:54:43,824 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=52.9 pTM=0.395 ipTM=0.397 tol=8.46
2024-12-06 09:55:32,794 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=53 pTM=0.397 ipTM=0.421 tol=8.73
2024-12-06 09:56:21,808 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=53.2 pTM=0.395 ipTM=0.448 tol=7.48
2024-12-06 09:57:10,758 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=53.1 pTM=0.397 ipTM=0.431 tol=7.7
2024-12-06 09:57:59,738 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=53.2 pTM=0.395 ipTM=0.397 tol=9.01
2024-12-06 09:58:48,702 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=53.1 pTM=0.397 ipTM=0.442 tol=8.01
2024-12-06 09:59:37,746 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=53.3 pTM=0.395 ipTM=0.459 tol=9.17
2024-12-06 10:00:26,733 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=52.9 pTM=0.396 ipTM=0.505 tol=8.92
2024-12-06 10:01:15,705 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=53.2 pTM=0.395 ipTM=0.429 tol=8.09
2024-12-06 10:02:04,654 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=53 pTM=0.396 ipTM=0.447 tol=7.53
2024-12-06 10:02:53,649 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=53.2 pTM=0.395 ipTM=0.463 tol=7.49
2024-12-06 10:03:42,622 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=53.1 pTM=0.396 ipTM=0.443 tol=7.21
2024-12-06 10:04:31,634 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=53.2 pTM=0.396 ipTM=0.391 tol=7.15
2024-12-06 10:05:20,614 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=53 pTM=0.397 ipTM=0.455 tol=7.96
2024-12-06 10:06:09,625 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=53.3 pTM=0.395 ipTM=0.465 tol=9.29
2024-12-06 10:06:58,576 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=53 pTM=0.396 ipTM=0.488 tol=9.6
2024-12-06 10:06:58,577 alphafold2_multimer_v3_model_4_seed_000 took 1519.4s (30 recycles)
2024-12-06 10:07:48,794 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=53.7 pTM=0.421 ipTM=0.293
2024-12-06 10:08:37,828 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=54.7 pTM=0.405 ipTM=0.78 tol=17.3
2024-12-06 10:09:26,841 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=55.3 pTM=0.414 ipTM=0.732 tol=13.3
2024-12-06 10:10:15,873 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=55.2 pTM=0.401 ipTM=0.671 tol=9.47
2024-12-06 10:11:04,891 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=55 pTM=0.412 ipTM=0.517 tol=12.3
2024-12-06 10:11:53,938 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=55.1 pTM=0.403 ipTM=0.372 tol=9.73
2024-12-06 10:12:42,956 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=55.4 pTM=0.409 ipTM=0.636 tol=8.84
2024-12-06 10:13:32,016 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=55.2 pTM=0.405 ipTM=0.583 tol=6.2
2024-12-06 10:14:21,024 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=55.1 pTM=0.409 ipTM=0.489 tol=7.64
2024-12-06 10:15:10,056 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=55.1 pTM=0.404 ipTM=0.531 tol=8.69
2024-12-06 10:15:59,079 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55.4 pTM=0.409 ipTM=0.593 tol=8.88
2024-12-06 10:16:48,133 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55.3 pTM=0.403 ipTM=0.49 tol=10.3
2024-12-06 10:17:37,155 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.2 pTM=0.41 ipTM=0.491 tol=7.96
2024-12-06 10:18:26,157 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=55.2 pTM=0.404 ipTM=0.44 tol=6.57
2024-12-06 10:19:15,138 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.4 pTM=0.407 ipTM=0.526 tol=6.03
2024-12-06 10:20:04,132 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.4 pTM=0.404 ipTM=0.499 tol=6.11
2024-12-06 10:20:53,157 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.3 pTM=0.409 ipTM=0.452 tol=7.31
2024-12-06 10:21:42,237 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.5 pTM=0.404 ipTM=0.524 tol=11.1
2024-12-06 10:22:31,275 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=55.5 pTM=0.408 ipTM=0.548 tol=5.82
2024-12-06 10:23:20,328 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=55.4 pTM=0.404 ipTM=0.457 tol=8.99
2024-12-06 10:24:09,351 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.3 pTM=0.408 ipTM=0.519 tol=12.7
2024-12-06 10:24:58,369 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55.3 pTM=0.404 ipTM=0.505 tol=4.5
2024-12-06 10:25:47,374 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.3 pTM=0.406 ipTM=0.513 tol=3.41
2024-12-06 10:26:36,383 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.3 pTM=0.406 ipTM=0.496 tol=4.52
2024-12-06 10:27:25,434 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.5 pTM=0.408 ipTM=0.532 tol=3.55
2024-12-06 10:28:14,454 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.3 pTM=0.406 ipTM=0.462 tol=2.61
2024-12-06 10:29:03,468 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.4 pTM=0.406 ipTM=0.524 tol=4.19
2024-12-06 10:29:52,483 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=55.3 pTM=0.406 ipTM=0.504 tol=4.05
2024-12-06 10:30:41,539 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.5 pTM=0.407 ipTM=0.592 tol=4.34
2024-12-06 10:31:30,564 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.4 pTM=0.406 ipTM=0.437 tol=2.98
2024-12-06 10:32:19,587 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.3 pTM=0.405 ipTM=0.521 tol=3.71
2024-12-06 10:32:19,588 alphafold2_multimer_v3_model_5_seed_000 took 1519.7s (30 recycles)
2024-12-06 10:32:20,931 reranking models by 'multimer' metric
2024-12-06 10:32:24,942 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 10:36:13,976 Relaxation took 233.0s
2024-12-06 10:36:13,976 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.2 pTM=0.42 ipTM=0.612
2024-12-06 10:39:20,124 Relaxation took 186.1s
2024-12-06 10:39:20,124 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.3 pTM=0.405 ipTM=0.521
2024-12-06 10:44:36,156 Relaxation took 316.0s
2024-12-06 10:44:36,156 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=54.5 pTM=0.409 ipTM=0.516
2024-12-06 10:48:13,738 Relaxation took 217.6s
2024-12-06 10:48:13,738 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=55.6 pTM=0.406 ipTM=0.49
2024-12-06 10:53:17,977 Relaxation took 304.2s
2024-12-06 10:53:17,977 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=53 pTM=0.396 ipTM=0.488
2024-12-06 10:53:21,417 Done