2024-12-06 08:36:44,510 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 08:36:44,822 Running on GPU
2024-12-06 08:36:48,760 Found 6 citations for tools or databases
2024-12-06 08:36:48,760 Query 1/1: HECTD1_RAD51 (length 2949)
2024-12-06 08:36:49,027 Sleeping for 10s. Reason: PENDING
2024-12-06 08:36:59,295 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:37:09,555 Sleeping for 9s. Reason: RUNNING
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2024-12-06 08:37:54,843 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:38:04,103 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:38:09,358 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:38:14,613 Sleeping for 7s. Reason: RUNNING
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2024-12-06 08:38:31,142 Sleeping for 6s. Reason: RUNNING
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2024-12-06 08:40:01,454 Sleeping for 8s. Reason: RUNNING
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2024-12-06 08:40:18,970 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:40:28,234 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:40:35,485 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:40:45,746 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:40:51,006 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:40:59,265 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:41:09,525 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:41:15,785 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:41:22,044 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:41:29,294 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:41:34,552 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:41:42,811 Sleeping for 8s. Reason: RUNNING
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2024-12-06 08:42:31,353 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:42:39,610 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:42:47,864 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:42:54,120 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:43:03,378 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:43:11,638 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:43:18,897 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:43:24,152 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:43:32,412 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:43:41,470 Sleeping for 5s. Reason: PENDING
2024-12-06 08:43:46,727 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:43:55,987 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:44:04,242 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:44:14,507 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:44:22,764 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:44:29,019 Sleeping for 9s. Reason: RUNNING
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2024-12-06 08:44:48,532 Sleeping for 9s. Reason: RUNNING
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2024-12-06 08:45:15,568 Sleeping for 9s. Reason: RUNNING
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2024-12-06 08:45:31,086 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:45:40,367 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:45:47,621 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:45:56,883 Sleeping for 8s. Reason: RUNNING
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2024-12-06 08:46:13,405 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:46:18,664 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:46:24,929 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:46:35,190 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:46:44,455 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:46:51,724 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:46:56,981 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:47:06,242 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:47:13,495 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:47:20,749 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:47:27,003 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:47:36,270 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:47:41,532 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:47:51,788 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:48:00,193 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:48:09,449 Sleeping for 10s. Reason: RUNNING
2024-12-06 08:48:19,719 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:48:28,983 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:48:37,240 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:48:43,496 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:48:48,755 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:48:58,010 Sleeping for 6s. Reason: RUNNING
2024-12-06 08:49:04,262 Sleeping for 7s. Reason: RUNNING
2024-12-06 08:49:11,515 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:49:16,766 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:49:22,020 Sleeping for 5s. Reason: RUNNING
2024-12-06 08:49:27,269 Sleeping for 9s. Reason: RUNNING
2024-12-06 08:49:36,526 Sleeping for 8s. Reason: RUNNING
2024-12-06 08:49:56,881 Setting max_seq=508, max_extra_seq=2048
2024-12-06 09:01:47,265 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=63.4 pTM=0.511 ipTM=0.299
2024-12-06 09:10:10,800 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=64.2 pTM=0.524 ipTM=0.301 tol=8.57
2024-12-06 09:18:34,308 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=64.2 pTM=0.532 ipTM=0.284 tol=7.15
2024-12-06 09:26:57,772 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=64.5 pTM=0.538 ipTM=0.271 tol=4.5
2024-12-06 09:35:21,027 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=64.4 pTM=0.541 ipTM=0.28 tol=3.2
2024-12-06 09:43:44,511 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=64.5 pTM=0.535 ipTM=0.28 tol=3.54
2024-12-06 09:52:08,016 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=64.4 pTM=0.537 ipTM=0.271 tol=3.02
2024-12-06 10:00:31,507 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=64.7 pTM=0.538 ipTM=0.273 tol=2.21
2024-12-06 10:08:55,003 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=64.6 pTM=0.531 ipTM=0.271 tol=4.84
2024-12-06 10:17:18,468 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=64.7 pTM=0.532 ipTM=0.273 tol=4.79
2024-12-06 10:25:41,996 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=64.8 pTM=0.535 ipTM=0.271 tol=3.43
2024-12-06 10:34:05,555 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=64.7 pTM=0.533 ipTM=0.274 tol=4.11
2024-12-06 10:42:29,006 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=64.8 pTM=0.531 ipTM=0.269 tol=2.56
2024-12-06 10:50:52,543 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=64.9 pTM=0.533 ipTM=0.273 tol=2.97
2024-12-06 10:59:16,096 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=64.8 pTM=0.532 ipTM=0.27 tol=4.06
2024-12-06 11:07:39,560 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=64.9 pTM=0.537 ipTM=0.267 tol=4.01
2024-12-06 11:16:03,059 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=64.8 pTM=0.53 ipTM=0.263 tol=2.97
2024-12-06 11:24:26,683 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=64.8 pTM=0.529 ipTM=0.264 tol=3.37
2024-12-06 11:32:50,134 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=64.8 pTM=0.532 ipTM=0.263 tol=2.92
2024-12-06 11:41:13,733 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=64.6 pTM=0.529 ipTM=0.267 tol=4.12
2024-12-06 11:49:37,217 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=64.7 pTM=0.528 ipTM=0.266 tol=5.64
2024-12-06 11:58:00,840 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=64.8 pTM=0.531 ipTM=0.266 tol=2.79
2024-12-06 12:06:24,385 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=64.7 pTM=0.528 ipTM=0.269 tol=3.53
2024-12-06 12:14:47,893 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=64.7 pTM=0.53 ipTM=0.274 tol=4.59
2024-12-06 12:23:11,452 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=64.5 pTM=0.531 ipTM=0.267 tol=5.06
2024-12-06 12:31:34,935 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=64.6 pTM=0.528 ipTM=0.27 tol=5.53
2024-12-06 12:39:58,420 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=64.7 pTM=0.532 ipTM=0.268 tol=3.53
2024-12-06 12:48:21,928 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=64.8 pTM=0.531 ipTM=0.27 tol=2.49
2024-12-06 12:56:45,499 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=64.7 pTM=0.534 ipTM=0.276 tol=5.04
2024-12-06 13:05:08,899 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=64.8 pTM=0.531 ipTM=0.275 tol=5.08
2024-12-06 13:13:32,403 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=64.7 pTM=0.534 ipTM=0.275 tol=2.39
2024-12-06 13:13:32,407 alphafold2_multimer_v3_model_1_seed_000 took 15811.4s (30 recycles)
2024-12-06 13:22:00,867 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=63.1 pTM=0.526 ipTM=0.316
2024-12-06 13:30:24,429 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=64.4 pTM=0.539 ipTM=0.354 tol=11.3
2024-12-06 13:38:47,917 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=64.6 pTM=0.532 ipTM=0.358 tol=6.19
2024-12-06 13:47:11,572 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=64.7 pTM=0.536 ipTM=0.335 tol=4.8
2024-12-06 13:55:35,191 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=64.6 pTM=0.535 ipTM=0.328 tol=5.55
2024-12-06 14:03:58,839 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=64.8 pTM=0.529 ipTM=0.309 tol=5.14
2024-12-06 14:12:22,452 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=64.8 pTM=0.529 ipTM=0.304 tol=4.3
2024-12-06 14:20:46,159 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=65 pTM=0.532 ipTM=0.305 tol=4.47
2024-12-06 14:29:09,739 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=65 pTM=0.53 ipTM=0.306 tol=5.51
2024-12-06 14:37:33,394 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=64.9 pTM=0.529 ipTM=0.303 tol=4.49
2024-12-06 14:45:56,937 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=65 pTM=0.533 ipTM=0.3 tol=2.59
2024-12-06 14:54:20,545 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=64.9 pTM=0.532 ipTM=0.3 tol=2.66
2024-12-06 15:02:44,045 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=65.2 pTM=0.532 ipTM=0.306 tol=2
2024-12-06 15:11:07,675 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=65.2 pTM=0.533 ipTM=0.316 tol=3.08
2024-12-06 15:19:31,299 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=65.2 pTM=0.534 ipTM=0.325 tol=2.85
2024-12-06 15:27:54,880 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=65.1 pTM=0.534 ipTM=0.323 tol=2.12
2024-12-06 15:36:18,433 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=65.1 pTM=0.532 ipTM=0.326 tol=2.39
2024-12-06 15:44:42,079 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=65.1 pTM=0.531 ipTM=0.323 tol=3.22
2024-12-06 15:53:05,737 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=65.1 pTM=0.532 ipTM=0.325 tol=3.16
2024-12-06 16:01:29,415 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=65.1 pTM=0.532 ipTM=0.324 tol=3.06
2024-12-06 16:09:52,967 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=65.1 pTM=0.531 ipTM=0.323 tol=2.51
2024-12-06 16:18:16,645 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=65 pTM=0.531 ipTM=0.324 tol=2.03
2024-12-06 16:26:40,324 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=65 pTM=0.53 ipTM=0.323 tol=2.47
2024-12-06 16:35:03,927 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=65.1 pTM=0.533 ipTM=0.323 tol=2.85
2024-12-06 16:43:27,565 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=64.9 pTM=0.531 ipTM=0.321 tol=2.1
2024-12-06 16:51:51,236 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=64.9 pTM=0.531 ipTM=0.321 tol=1.87
2024-12-06 17:00:14,887 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=64.9 pTM=0.533 ipTM=0.321 tol=2.11
2024-12-06 17:08:38,562 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=65.1 pTM=0.534 ipTM=0.321 tol=2.14
2024-12-06 17:17:02,232 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=65.1 pTM=0.536 ipTM=0.323 tol=2.58
2024-12-06 17:25:25,917 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=65.1 pTM=0.535 ipTM=0.32 tol=2.93
2024-12-06 17:33:49,534 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=64.9 pTM=0.535 ipTM=0.325 tol=1.99
2024-12-06 17:33:49,538 alphafold2_multimer_v3_model_2_seed_000 took 15612.2s (30 recycles)
2024-12-06 17:42:18,745 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=64.9 pTM=0.521 ipTM=0.282
2024-12-06 17:50:42,608 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=66.2 pTM=0.535 ipTM=0.262 tol=11
2024-12-06 17:59:06,235 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=66.4 pTM=0.564 ipTM=0.29 tol=10.2
2024-12-06 18:07:29,876 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=66.7 pTM=0.581 ipTM=0.299 tol=4.98
2024-12-06 18:15:53,367 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=66.8 pTM=0.583 ipTM=0.305 tol=5.82
2024-12-06 18:24:16,746 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=66.9 pTM=0.583 ipTM=0.305 tol=5.02
2024-12-06 18:32:40,200 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67 pTM=0.587 ipTM=0.308 tol=5.21
2024-12-06 18:41:03,621 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=67.1 pTM=0.591 ipTM=0.319 tol=3
2024-12-06 18:49:26,982 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.2 pTM=0.591 ipTM=0.32 tol=2.84
2024-12-06 18:57:50,460 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=67.1 pTM=0.59 ipTM=0.316 tol=3.7
2024-12-06 19:06:13,874 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=67.2 pTM=0.594 ipTM=0.324 tol=5.49
2024-12-06 19:14:37,156 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=67.1 pTM=0.592 ipTM=0.32 tol=6.45
2024-12-06 19:23:00,520 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.1 pTM=0.59 ipTM=0.324 tol=4.58
2024-12-06 19:31:23,833 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=67.4 pTM=0.593 ipTM=0.325 tol=3.25
2024-12-06 19:39:47,043 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=67.3 pTM=0.593 ipTM=0.329 tol=4
2024-12-06 19:48:10,255 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=67.2 pTM=0.596 ipTM=0.339 tol=3.47
2024-12-06 19:56:33,539 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=67.3 pTM=0.595 ipTM=0.342 tol=3.4
2024-12-06 20:04:56,735 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=67.3 pTM=0.595 ipTM=0.343 tol=3.2
2024-12-06 20:13:20,008 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=67.3 pTM=0.597 ipTM=0.336 tol=3.84
2024-12-06 20:21:43,290 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=67.3 pTM=0.594 ipTM=0.342 tol=3.09
2024-12-06 20:30:06,455 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=67.4 pTM=0.597 ipTM=0.346 tol=2.57
2024-12-06 20:38:29,765 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=67.2 pTM=0.592 ipTM=0.335 tol=2.44
2024-12-06 20:46:53,032 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=67.4 pTM=0.596 ipTM=0.339 tol=2.62
2024-12-06 20:55:16,292 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=67.3 pTM=0.597 ipTM=0.346 tol=5.1
2024-12-06 21:03:39,533 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=67.4 pTM=0.6 ipTM=0.366 tol=3.57
2024-12-06 21:12:02,734 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67.4 pTM=0.598 ipTM=0.377 tol=3.6
2024-12-06 21:20:25,959 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67.4 pTM=0.601 ipTM=0.361 tol=4.28
2024-12-06 21:28:49,145 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=67.4 pTM=0.599 ipTM=0.361 tol=3.21
2024-12-06 21:37:12,384 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=67.3 pTM=0.601 ipTM=0.368 tol=2.98
2024-12-06 21:45:35,665 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=67.4 pTM=0.598 ipTM=0.36 tol=3.46
2024-12-06 21:53:58,963 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=67.4 pTM=0.595 ipTM=0.344 tol=3.12
2024-12-06 21:53:58,969 alphafold2_multimer_v3_model_3_seed_000 took 15604.5s (30 recycles)
2024-12-06 22:02:27,639 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=62.8 pTM=0.543 ipTM=0.386
2024-12-06 22:10:51,115 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=63.7 pTM=0.577 ipTM=0.331 tol=9.38
2024-12-06 22:19:14,566 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=64.3 pTM=0.597 ipTM=0.341 tol=7.9
2024-12-06 22:27:37,927 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=64.7 pTM=0.608 ipTM=0.337 tol=5.87
2024-12-06 22:36:01,265 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=64.8 pTM=0.61 ipTM=0.331 tol=4.41
2024-12-06 22:44:24,507 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=65 pTM=0.612 ipTM=0.33 tol=3.99
2024-12-06 22:52:47,798 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=65.1 pTM=0.615 ipTM=0.328 tol=4.52
2024-12-06 23:01:11,042 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=65 pTM=0.617 ipTM=0.326 tol=6.38
2024-12-06 23:09:34,309 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=65.1 pTM=0.619 ipTM=0.332 tol=5.04
2024-12-06 23:17:57,507 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=65.1 pTM=0.618 ipTM=0.33 tol=6.64
2024-12-06 23:26:20,717 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=65.2 pTM=0.622 ipTM=0.334 tol=6.91
2024-12-06 23:34:43,951 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=65.1 pTM=0.622 ipTM=0.334 tol=3.45
2024-12-06 23:43:07,170 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=65.1 pTM=0.62 ipTM=0.333 tol=3.24
2024-12-06 23:51:30,475 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=65.2 pTM=0.62 ipTM=0.329 tol=4.51
2024-12-06 23:59:53,770 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=65.1 pTM=0.621 ipTM=0.327 tol=6.15
2024-12-07 00:08:17,038 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=65.1 pTM=0.619 ipTM=0.328 tol=3.47
2024-12-07 00:16:40,368 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=64.9 pTM=0.617 ipTM=0.327 tol=2.59
2024-12-07 00:25:03,638 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=65.2 pTM=0.622 ipTM=0.328 tol=2.51
2024-12-07 00:33:26,916 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=65 pTM=0.62 ipTM=0.331 tol=2.45
2024-12-07 00:41:50,241 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.1 pTM=0.623 ipTM=0.335 tol=6.18
2024-12-07 00:50:13,588 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=65.1 pTM=0.621 ipTM=0.328 tol=5.85
2024-12-07 00:58:36,931 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=65 pTM=0.618 ipTM=0.328 tol=3.17
2024-12-07 01:07:00,217 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=65.1 pTM=0.619 ipTM=0.329 tol=5.18
2024-12-07 01:15:23,485 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=65.1 pTM=0.62 ipTM=0.334 tol=5.66
2024-12-07 01:23:46,769 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=65 pTM=0.621 ipTM=0.331 tol=6.03
2024-12-07 01:32:09,991 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=65 pTM=0.619 ipTM=0.331 tol=2.51
2024-12-07 01:40:33,276 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=65.1 pTM=0.621 ipTM=0.33 tol=5.22
2024-12-07 01:48:56,613 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=65.1 pTM=0.621 ipTM=0.331 tol=5.24
2024-12-07 01:57:19,798 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=65 pTM=0.621 ipTM=0.33 tol=4.72
2024-12-07 02:05:42,930 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=65.1 pTM=0.621 ipTM=0.332 tol=2.97
2024-12-07 02:14:06,218 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=65.1 pTM=0.622 ipTM=0.332 tol=2.59
2024-12-07 02:14:06,223 alphafold2_multimer_v3_model_4_seed_000 took 15602.3s (30 recycles)
2024-12-07 02:22:34,973 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=62.7 pTM=0.495 ipTM=0.345
2024-12-07 02:30:58,339 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=64.3 pTM=0.514 ipTM=0.304 tol=8.23
2024-12-07 02:39:21,613 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=64.9 pTM=0.525 ipTM=0.328 tol=4.91
2024-12-07 02:47:44,805 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=65.1 pTM=0.541 ipTM=0.342 tol=6.37
2024-12-07 02:56:07,955 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=65.4 pTM=0.545 ipTM=0.317 tol=3.54
2024-12-07 03:04:31,182 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=65.4 pTM=0.549 ipTM=0.329 tol=2.71
2024-12-07 03:12:54,302 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=65.6 pTM=0.556 ipTM=0.323 tol=3.38
2024-12-07 03:21:17,401 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=65.9 pTM=0.56 ipTM=0.326 tol=1.64
2024-12-07 03:29:40,498 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=65.8 pTM=0.563 ipTM=0.331 tol=3.49
2024-12-07 03:38:03,652 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=65.9 pTM=0.563 ipTM=0.327 tol=2.88
2024-12-07 03:46:26,624 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=65.8 pTM=0.565 ipTM=0.333 tol=3.04
2024-12-07 03:54:49,643 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=66.1 pTM=0.567 ipTM=0.334 tol=2.96
2024-12-07 04:03:12,740 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=66 pTM=0.566 ipTM=0.333 tol=3.74
2024-12-07 04:11:35,691 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=66 pTM=0.568 ipTM=0.337 tol=2.76
2024-12-07 04:19:58,788 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=65.9 pTM=0.569 ipTM=0.338 tol=2.16
2024-12-07 04:28:21,849 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=66 pTM=0.571 ipTM=0.336 tol=3.61
2024-12-07 04:36:45,019 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=65.9 pTM=0.567 ipTM=0.33 tol=3.57
2024-12-07 04:45:08,100 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=65.9 pTM=0.567 ipTM=0.334 tol=2.95
2024-12-07 04:53:31,162 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=66.1 pTM=0.572 ipTM=0.332 tol=3.57
2024-12-07 05:01:54,326 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=65.9 pTM=0.573 ipTM=0.33 tol=3.82
2024-12-07 05:10:17,489 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=66.1 pTM=0.573 ipTM=0.32 tol=2.86
2024-12-07 05:18:40,667 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=65.9 pTM=0.568 ipTM=0.328 tol=3.04
2024-12-07 05:27:03,739 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=65.9 pTM=0.571 ipTM=0.336 tol=3.04
2024-12-07 05:35:26,901 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=66 pTM=0.572 ipTM=0.335 tol=3.09
2024-12-07 05:43:50,065 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=66 pTM=0.572 ipTM=0.333 tol=3.91
2024-12-07 05:52:13,211 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=65.9 pTM=0.569 ipTM=0.326 tol=3.13
2024-12-07 06:00:36,354 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=65.9 pTM=0.573 ipTM=0.331 tol=1.95
2024-12-07 06:08:59,475 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=66 pTM=0.573 ipTM=0.332 tol=3.08
2024-12-07 06:17:22,576 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=65.9 pTM=0.576 ipTM=0.336 tol=1.64
2024-12-07 06:25:45,633 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=65.9 pTM=0.573 ipTM=0.336 tol=1.56
2024-12-07 06:34:08,671 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=65.9 pTM=0.574 ipTM=0.329 tol=3.32
2024-12-07 06:34:08,675 alphafold2_multimer_v3_model_5_seed_000 took 15597.5s (30 recycles)
2024-12-07 06:34:13,611 reranking models by 'multimer' metric
2024-12-07 06:34:17,860 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 06:48:03,226 Relaxation took 829.6s
2024-12-07 06:48:03,226 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=67.4 pTM=0.595 ipTM=0.344
2024-12-07 07:02:01,082 Relaxation took 837.9s
2024-12-07 07:02:01,082 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=65.1 pTM=0.622 ipTM=0.332
2024-12-07 07:12:21,287 Relaxation took 620.2s
2024-12-07 07:12:21,288 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=65.9 pTM=0.574 ipTM=0.329
2024-12-07 07:24:46,124 Relaxation took 744.8s
2024-12-07 07:24:46,125 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=64.9 pTM=0.535 ipTM=0.325
2024-12-07 07:33:14,592 Relaxation took 508.5s
2024-12-07 07:33:14,592 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=64.7 pTM=0.534 ipTM=0.275
2024-12-07 07:33:24,974 Done