2024-12-06 10:38:07,988 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 10:38:09,624 Running on GPU
2024-12-06 10:38:14,915 Found 6 citations for tools or databases
2024-12-06 10:38:14,915 Query 1/1: HERC4_ALOXE3 (length 1768)
2024-12-06 10:38:15,218 Sleeping for 7s. Reason: PENDING
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2024-12-06 10:45:19,719 Setting max_seq=508, max_extra_seq=2048
2024-12-06 10:49:46,683 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=83.7 pTM=0.553 ipTM=0.208
2024-12-06 10:51:07,373 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=84.1 pTM=0.537 ipTM=0.205 tol=2.4
2024-12-06 10:52:28,107 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=84.7 pTM=0.537 ipTM=0.211 tol=6.76
2024-12-06 10:53:48,784 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=85.2 pTM=0.539 ipTM=0.227 tol=3.8
2024-12-06 10:55:09,315 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85 pTM=0.552 ipTM=0.255 tol=2.78
2024-12-06 10:56:29,920 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.2 pTM=0.536 ipTM=0.323 tol=11.2
2024-12-06 10:57:50,500 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.7 pTM=0.531 ipTM=0.308 tol=6.2
2024-12-06 10:59:11,142 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85.4 pTM=0.528 ipTM=0.246 tol=1.6
2024-12-06 11:00:31,627 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=86.1 pTM=0.548 ipTM=0.342 tol=3.78
2024-12-06 11:01:52,073 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=86.4 pTM=0.571 ipTM=0.467 tol=0.762
2024-12-06 11:03:12,478 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=86.7 pTM=0.613 ipTM=0.583 tol=0.61
2024-12-06 11:04:32,885 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=87.2 pTM=0.653 ipTM=0.658 tol=0.391
2024-12-06 11:04:32,887 alphafold2_multimer_v3_model_1_seed_000 took 1128.4s (11 recycles)
2024-12-06 11:05:56,352 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.1 pTM=0.571 ipTM=0.22
2024-12-06 11:07:17,342 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=84.4 pTM=0.555 ipTM=0.204 tol=8.75
2024-12-06 11:08:37,985 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=86.3 pTM=0.569 ipTM=0.509 tol=18.6
2024-12-06 11:09:58,591 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=86.3 pTM=0.583 ipTM=0.553 tol=1.46
2024-12-06 11:11:19,133 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=86.2 pTM=0.579 ipTM=0.539 tol=0.444
2024-12-06 11:11:19,135 alphafold2_multimer_v3_model_2_seed_000 took 403.6s (4 recycles)
2024-12-06 11:12:42,325 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=84.2 pTM=0.563 ipTM=0.218
2024-12-06 11:14:02,704 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=85.8 pTM=0.567 ipTM=0.529 tol=17.9
2024-12-06 11:15:23,058 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.6 pTM=0.557 ipTM=0.377 tol=4.25
2024-12-06 11:16:43,379 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=86.1 pTM=0.566 ipTM=0.564 tol=3.93
2024-12-06 11:18:03,712 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.9 pTM=0.556 ipTM=0.43 tol=0.723
2024-12-06 11:19:24,095 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.8 pTM=0.555 ipTM=0.488 tol=0.924
2024-12-06 11:20:44,505 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.9 pTM=0.558 ipTM=0.42 tol=0.829
2024-12-06 11:22:04,915 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=86.1 pTM=0.562 ipTM=0.516 tol=0.761
2024-12-06 11:23:25,336 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=86.1 pTM=0.565 ipTM=0.5 tol=0.868
2024-12-06 11:24:45,736 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=86.4 pTM=0.579 ipTM=0.575 tol=0.361
2024-12-06 11:24:45,738 alphafold2_multimer_v3_model_3_seed_000 took 804.0s (9 recycles)
2024-12-06 11:26:09,206 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=83.6 pTM=0.553 ipTM=0.202
2024-12-06 11:27:29,939 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=84.6 pTM=0.54 ipTM=0.226 tol=16.9
2024-12-06 11:28:50,621 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=85.4 pTM=0.539 ipTM=0.352 tol=4.47
2024-12-06 11:30:11,555 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.8 pTM=0.535 ipTM=0.195 tol=17.3
2024-12-06 11:31:32,483 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=84.1 pTM=0.529 ipTM=0.19 tol=5.56
2024-12-06 11:32:53,394 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.4 pTM=0.533 ipTM=0.195 tol=3.27
2024-12-06 11:34:14,284 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.1 pTM=0.527 ipTM=0.198 tol=1.73
2024-12-06 11:35:35,036 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.9 pTM=0.537 ipTM=0.215 tol=15.1
2024-12-06 11:36:55,832 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84.3 pTM=0.535 ipTM=0.206 tol=3.65
2024-12-06 11:38:16,459 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=85.4 pTM=0.55 ipTM=0.3 tol=5.75
2024-12-06 11:39:37,068 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=85.3 pTM=0.552 ipTM=0.379 tol=1.17
2024-12-06 11:40:57,623 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=85.7 pTM=0.566 ipTM=0.358 tol=1.01
2024-12-06 11:42:18,154 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=85.5 pTM=0.562 ipTM=0.397 tol=0.466
2024-12-06 11:42:18,155 alphafold2_multimer_v3_model_4_seed_000 took 1049.8s (12 recycles)
2024-12-06 11:43:41,575 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.7 pTM=0.542 ipTM=0.209
2024-12-06 11:45:01,982 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=85.2 pTM=0.586 ipTM=0.547 tol=20
2024-12-06 11:46:22,377 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=85.2 pTM=0.562 ipTM=0.439 tol=1.59
2024-12-06 11:47:42,793 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=86 pTM=0.578 ipTM=0.535 tol=1.07
2024-12-06 11:49:03,183 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=86.3 pTM=0.59 ipTM=0.554 tol=0.43
2024-12-06 11:49:03,184 alphafold2_multimer_v3_model_5_seed_000 took 402.4s (4 recycles)
2024-12-06 11:49:05,802 reranking models by 'multimer' metric
2024-12-06 11:49:11,290 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 11:51:21,523 Relaxation took 135.7s
2024-12-06 11:51:21,524 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=87.2 pTM=0.653 ipTM=0.658
2024-12-06 11:53:13,616 Relaxation took 112.1s
2024-12-06 11:53:13,616 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=86.4 pTM=0.579 ipTM=0.575
2024-12-06 11:55:08,398 Relaxation took 114.8s
2024-12-06 11:55:08,398 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=86.3 pTM=0.59 ipTM=0.554
2024-12-06 11:57:22,396 Relaxation took 134.0s
2024-12-06 11:57:22,397 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=86.2 pTM=0.579 ipTM=0.539
2024-12-06 11:59:28,681 Relaxation took 126.3s
2024-12-06 11:59:28,681 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=85.5 pTM=0.562 ipTM=0.397
2024-12-06 11:59:34,332 Done