2024-12-06 10:58:12,908 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 10:58:13,226 Running on GPU
2024-12-06 10:58:17,701 Found 6 citations for tools or databases
2024-12-06 10:58:17,701 Query 1/1: HERC4_NLRX1 (length 2032)
2024-12-06 10:58:18,002 Sleeping for 8s. Reason: PENDING
2024-12-06 10:58:26,258 Sleeping for 9s. Reason: RUNNING
2024-12-06 10:58:35,525 Sleeping for 10s. Reason: RUNNING
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2024-12-06 11:00:07,121 Sleeping for 7s. Reason: RUNNING
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2024-12-06 11:01:28,729 Sleeping for 5s. Reason: RUNNING
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2024-12-06 11:01:48,497 Sleeping for 9s. Reason: RUNNING
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2024-12-06 11:02:44,332 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:02:51,596 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:02:58,848 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:03:06,100 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:03:13,354 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:03:20,612 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:03:28,877 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:03:39,288 Sleeping for 8s. Reason: RUNNING
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2024-12-06 11:04:02,065 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:04:14,655 Sleeping for 10s. Reason: PENDING
2024-12-06 11:04:24,914 Sleeping for 9s. Reason: PENDING
2024-12-06 11:04:34,170 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:04:43,428 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:04:51,685 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:04:59,951 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:05:07,215 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:05:12,468 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:05:20,726 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:05:27,981 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:05:37,241 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:05:46,499 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:05:53,772 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:06:01,025 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:06:11,284 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:06:20,553 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:06:26,807 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:06:36,061 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:06:46,314 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:06:52,569 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:06:59,835 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:07:10,092 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:07:18,364 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:07:25,626 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:07:32,889 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:07:49,600 Setting max_seq=508, max_extra_seq=2048
2024-12-06 11:12:30,209 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.6 pTM=0.508 ipTM=0.201
2024-12-06 11:15:10,753 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.8 pTM=0.486 ipTM=0.186 tol=6.62
2024-12-06 11:17:51,414 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=76.6 pTM=0.483 ipTM=0.183 tol=8.73
2024-12-06 11:20:31,933 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=76.4 pTM=0.485 ipTM=0.196 tol=10.3
2024-12-06 11:23:12,301 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=76.9 pTM=0.49 ipTM=0.205 tol=5.39
2024-12-06 11:25:52,698 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.2 pTM=0.491 ipTM=0.2 tol=4
2024-12-06 11:28:33,107 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=77.6 pTM=0.49 ipTM=0.198 tol=4.76
2024-12-06 11:31:13,541 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=77.6 pTM=0.496 ipTM=0.197 tol=4.02
2024-12-06 11:33:53,985 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=77.8 pTM=0.49 ipTM=0.195 tol=4.8
2024-12-06 11:36:34,460 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=77.7 pTM=0.489 ipTM=0.197 tol=5.02
2024-12-06 11:39:14,905 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=77.8 pTM=0.491 ipTM=0.198 tol=2.51
2024-12-06 11:41:55,335 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=77.7 pTM=0.49 ipTM=0.198 tol=1.13
2024-12-06 11:44:35,743 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=77.8 pTM=0.49 ipTM=0.197 tol=1.19
2024-12-06 11:47:16,195 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=77.6 pTM=0.491 ipTM=0.2 tol=1.37
2024-12-06 11:49:56,630 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=77.8 pTM=0.492 ipTM=0.198 tol=1.73
2024-12-06 11:52:37,029 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=77.7 pTM=0.489 ipTM=0.198 tol=0.874
2024-12-06 11:55:17,417 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=77.8 pTM=0.491 ipTM=0.198 tol=0.909
2024-12-06 11:57:57,824 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=77.7 pTM=0.491 ipTM=0.2 tol=1.81
2024-12-06 12:00:38,272 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=77.9 pTM=0.49 ipTM=0.199 tol=1.9
2024-12-06 12:03:18,672 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=77.9 pTM=0.495 ipTM=0.201 tol=1.72
2024-12-06 12:05:59,081 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=77.6 pTM=0.491 ipTM=0.198 tol=1.71
2024-12-06 12:08:39,484 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=77.7 pTM=0.491 ipTM=0.199 tol=1.25
2024-12-06 12:11:19,876 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=77.6 pTM=0.489 ipTM=0.197 tol=2.46
2024-12-06 12:14:00,274 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=77.4 pTM=0.489 ipTM=0.197 tol=1.76
2024-12-06 12:16:40,706 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=77.6 pTM=0.488 ipTM=0.197 tol=1.65
2024-12-06 12:19:21,125 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=77.6 pTM=0.491 ipTM=0.198 tol=2.12
2024-12-06 12:22:01,518 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=77.5 pTM=0.489 ipTM=0.198 tol=1.86
2024-12-06 12:24:41,953 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=77.3 pTM=0.487 ipTM=0.198 tol=1.47
2024-12-06 12:27:22,359 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=77.4 pTM=0.489 ipTM=0.198 tol=1.75
2024-12-06 12:30:02,787 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=77.3 pTM=0.486 ipTM=0.196 tol=1.62
2024-12-06 12:32:43,233 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=78 pTM=0.491 ipTM=0.197 tol=1.45
2024-12-06 12:32:43,235 alphafold2_multimer_v3_model_1_seed_000 took 5088.8s (30 recycles)
2024-12-06 12:35:26,436 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.3 pTM=0.514 ipTM=0.191
2024-12-06 12:38:07,169 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.5 pTM=0.504 ipTM=0.194 tol=7.39
2024-12-06 12:40:47,877 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=77.6 pTM=0.505 ipTM=0.193 tol=3.88
2024-12-06 12:43:28,550 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.1 pTM=0.504 ipTM=0.191 tol=4.07
2024-12-06 12:46:09,256 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.3 pTM=0.503 ipTM=0.191 tol=4.93
2024-12-06 12:48:49,913 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.6 pTM=0.506 ipTM=0.191 tol=1.55
2024-12-06 12:51:30,576 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.9 pTM=0.507 ipTM=0.192 tol=1.25
2024-12-06 12:54:11,226 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=79 pTM=0.506 ipTM=0.192 tol=1.57
2024-12-06 12:56:51,890 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=79.4 pTM=0.51 ipTM=0.193 tol=1.04
2024-12-06 12:59:32,498 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=79.3 pTM=0.51 ipTM=0.192 tol=1.5
2024-12-06 13:02:13,085 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=79.4 pTM=0.51 ipTM=0.192 tol=1.6
2024-12-06 13:04:53,689 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=79.3 pTM=0.509 ipTM=0.192 tol=0.943
2024-12-06 13:07:34,279 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=79.3 pTM=0.508 ipTM=0.191 tol=1.23
2024-12-06 13:10:14,857 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=79.2 pTM=0.509 ipTM=0.19 tol=1.2
2024-12-06 13:12:55,447 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=79.4 pTM=0.51 ipTM=0.191 tol=1.61
2024-12-06 13:15:36,006 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=79.2 pTM=0.508 ipTM=0.191 tol=0.728
2024-12-06 13:18:16,608 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=78.8 pTM=0.508 ipTM=0.191 tol=6.57
2024-12-06 13:20:57,202 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=79.4 pTM=0.511 ipTM=0.193 tol=6.15
2024-12-06 13:23:37,816 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=79.2 pTM=0.507 ipTM=0.192 tol=1.96
2024-12-06 13:26:18,449 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=79.2 pTM=0.509 ipTM=0.193 tol=1.06
2024-12-06 13:28:59,064 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=79.3 pTM=0.51 ipTM=0.193 tol=3.14
2024-12-06 13:31:39,678 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=79.4 pTM=0.511 ipTM=0.192 tol=2.35
2024-12-06 13:34:20,263 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=79.2 pTM=0.508 ipTM=0.191 tol=1.66
2024-12-06 13:37:00,879 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=79.1 pTM=0.508 ipTM=0.191 tol=1.71
2024-12-06 13:39:41,486 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=79.2 pTM=0.508 ipTM=0.191 tol=1.51
2024-12-06 13:42:22,121 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=79.3 pTM=0.508 ipTM=0.191 tol=1.3
2024-12-06 13:45:02,745 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=79.1 pTM=0.506 ipTM=0.19 tol=1.54
2024-12-06 13:47:43,377 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=79.1 pTM=0.507 ipTM=0.19 tol=1.32
2024-12-06 13:50:23,969 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=78.9 pTM=0.506 ipTM=0.189 tol=0.734
2024-12-06 13:53:04,607 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=78.9 pTM=0.506 ipTM=0.19 tol=0.75
2024-12-06 13:55:45,247 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=79.2 pTM=0.507 ipTM=0.189 tol=1.04
2024-12-06 13:55:45,249 alphafold2_multimer_v3_model_2_seed_000 took 4979.6s (30 recycles)
2024-12-06 13:58:28,295 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.4 pTM=0.509 ipTM=0.188
2024-12-06 14:01:08,843 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.6 pTM=0.502 ipTM=0.185 tol=9.55
2024-12-06 14:03:49,460 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.8 pTM=0.504 ipTM=0.184 tol=15.4
2024-12-06 14:06:29,940 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.7 pTM=0.507 ipTM=0.197 tol=21.7
2024-12-06 14:09:10,522 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=77.1 pTM=0.51 ipTM=0.184 tol=11.3
2024-12-06 14:11:50,951 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.4 pTM=0.512 ipTM=0.199 tol=7.61
2024-12-06 14:14:31,231 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=77.6 pTM=0.512 ipTM=0.213 tol=3.34
2024-12-06 14:17:11,579 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=77.6 pTM=0.512 ipTM=0.204 tol=1.94
2024-12-06 14:19:52,076 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=77.7 pTM=0.511 ipTM=0.191 tol=3.39
2024-12-06 14:22:32,503 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=77.6 pTM=0.51 ipTM=0.199 tol=3.38
2024-12-06 14:25:12,830 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=77.6 pTM=0.514 ipTM=0.212 tol=2.72
2024-12-06 14:27:53,198 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=77.6 pTM=0.512 ipTM=0.204 tol=2.01
2024-12-06 14:30:33,648 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=77.6 pTM=0.509 ipTM=0.191 tol=3.87
2024-12-06 14:33:13,920 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=77.6 pTM=0.513 ipTM=0.211 tol=4.38
2024-12-06 14:35:54,304 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=77.6 pTM=0.509 ipTM=0.195 tol=3.56
2024-12-06 14:38:34,693 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=77.4 pTM=0.508 ipTM=0.194 tol=2.61
2024-12-06 14:41:15,299 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=77.9 pTM=0.509 ipTM=0.184 tol=8.89
2024-12-06 14:43:55,640 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=77.6 pTM=0.509 ipTM=0.202 tol=10.6
2024-12-06 14:46:36,229 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=77.6 pTM=0.505 ipTM=0.183 tol=8.11
2024-12-06 14:49:16,626 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=77.3 pTM=0.508 ipTM=0.197 tol=6.96
2024-12-06 14:51:57,227 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=77.5 pTM=0.507 ipTM=0.185 tol=14.4
2024-12-06 14:54:37,490 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=77.6 pTM=0.512 ipTM=0.217 tol=17.9
2024-12-06 14:57:18,030 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=77.6 pTM=0.508 ipTM=0.185 tol=14.2
2024-12-06 14:59:58,424 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=77.6 pTM=0.509 ipTM=0.201 tol=11.9
2024-12-06 15:02:39,006 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=77.4 pTM=0.508 ipTM=0.186 tol=12.4
2024-12-06 15:05:19,428 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=77.6 pTM=0.509 ipTM=0.199 tol=12.1
2024-12-06 15:08:00,010 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=77.4 pTM=0.507 ipTM=0.185 tol=12.5
2024-12-06 15:10:40,413 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=77.2 pTM=0.508 ipTM=0.201 tol=11.9
2024-12-06 15:13:20,997 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=77.4 pTM=0.509 ipTM=0.185 tol=11.8
2024-12-06 15:16:01,389 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=77.4 pTM=0.51 ipTM=0.203 tol=13.6
2024-12-06 15:18:42,010 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=77.2 pTM=0.505 ipTM=0.183 tol=15.6
2024-12-06 15:18:42,012 alphafold2_multimer_v3_model_3_seed_000 took 4974.3s (30 recycles)
2024-12-06 15:21:25,004 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.4 pTM=0.519 ipTM=0.2
2024-12-06 15:24:05,596 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77 pTM=0.507 ipTM=0.195 tol=10.2
2024-12-06 15:26:46,129 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.4 pTM=0.507 ipTM=0.196 tol=7.5
2024-12-06 15:29:26,457 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.3 pTM=0.505 ipTM=0.202 tol=20.3
2024-12-06 15:32:06,733 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.4 pTM=0.507 ipTM=0.218 tol=3.28
2024-12-06 15:34:46,879 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.7 pTM=0.515 ipTM=0.241 tol=4.42
2024-12-06 15:37:27,048 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.7 pTM=0.512 ipTM=0.228 tol=3.4
2024-12-06 15:40:07,201 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=77.8 pTM=0.517 ipTM=0.237 tol=2.89
2024-12-06 15:42:47,439 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.5 pTM=0.513 ipTM=0.226 tol=2.06
2024-12-06 15:45:27,628 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=77.7 pTM=0.516 ipTM=0.234 tol=2.53
2024-12-06 15:48:07,856 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=77.8 pTM=0.515 ipTM=0.225 tol=3.17
2024-12-06 15:50:48,070 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77.6 pTM=0.512 ipTM=0.23 tol=3.32
2024-12-06 15:53:28,321 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=77.4 pTM=0.51 ipTM=0.223 tol=2.6
2024-12-06 15:56:08,607 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=77.5 pTM=0.513 ipTM=0.224 tol=3.32
2024-12-06 15:58:48,863 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=77.6 pTM=0.512 ipTM=0.229 tol=3.23
2024-12-06 16:01:29,123 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=77.6 pTM=0.511 ipTM=0.221 tol=3.14
2024-12-06 16:04:09,333 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=77.6 pTM=0.515 ipTM=0.229 tol=3.68
2024-12-06 16:06:49,591 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=77.6 pTM=0.511 ipTM=0.222 tol=1.99
2024-12-06 16:09:29,811 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=77.6 pTM=0.511 ipTM=0.229 tol=2.2
2024-12-06 16:12:10,060 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=77.3 pTM=0.51 ipTM=0.219 tol=1.06
2024-12-06 16:14:50,272 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=77.4 pTM=0.51 ipTM=0.229 tol=2.08
2024-12-06 16:17:30,504 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=77.4 pTM=0.511 ipTM=0.222 tol=2.49
2024-12-06 16:20:10,689 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=77.5 pTM=0.512 ipTM=0.23 tol=2.57
2024-12-06 16:22:50,927 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=77.4 pTM=0.512 ipTM=0.221 tol=2.72
2024-12-06 16:25:31,112 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=77.6 pTM=0.512 ipTM=0.232 tol=3.03
2024-12-06 16:28:11,292 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=77.4 pTM=0.512 ipTM=0.229 tol=3.81
2024-12-06 16:30:51,521 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=77.5 pTM=0.511 ipTM=0.228 tol=2.77
2024-12-06 16:33:31,780 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=77.1 pTM=0.506 ipTM=0.216 tol=1.01
2024-12-06 16:36:11,995 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=77.3 pTM=0.512 ipTM=0.235 tol=1.24
2024-12-06 16:38:52,229 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=77.3 pTM=0.511 ipTM=0.223 tol=1.26
2024-12-06 16:41:32,492 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=77.4 pTM=0.509 ipTM=0.226 tol=1.25
2024-12-06 16:41:32,494 alphafold2_multimer_v3_model_4_seed_000 took 4968.1s (30 recycles)
2024-12-06 16:44:15,399 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.2 pTM=0.51 ipTM=0.201
2024-12-06 16:46:55,875 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=75.5 pTM=0.507 ipTM=0.197 tol=6.89
2024-12-06 16:49:36,379 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.3 pTM=0.51 ipTM=0.195 tol=2.98
2024-12-06 16:52:16,835 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.2 pTM=0.508 ipTM=0.2 tol=3.24
2024-12-06 16:54:57,187 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.5 pTM=0.514 ipTM=0.21 tol=4.78
2024-12-06 16:57:37,615 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76.4 pTM=0.514 ipTM=0.205 tol=3.46
2024-12-06 17:00:17,997 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=76.8 pTM=0.514 ipTM=0.208 tol=2.75
2024-12-06 17:02:58,329 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.9 pTM=0.506 ipTM=0.199 tol=6.26
2024-12-06 17:05:38,711 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.9 pTM=0.505 ipTM=0.2 tol=2.3
2024-12-06 17:08:19,072 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.8 pTM=0.51 ipTM=0.201 tol=2.75
2024-12-06 17:10:59,414 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=76.8 pTM=0.507 ipTM=0.2 tol=1.86
2024-12-06 17:13:39,748 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=76.7 pTM=0.505 ipTM=0.203 tol=1.23
2024-12-06 17:16:20,122 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76.8 pTM=0.508 ipTM=0.202 tol=2.16
2024-12-06 17:19:00,462 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=76.6 pTM=0.503 ipTM=0.201 tol=3.37
2024-12-06 17:21:40,826 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=76.6 pTM=0.504 ipTM=0.199 tol=2.01
2024-12-06 17:24:21,187 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=76.8 pTM=0.509 ipTM=0.201 tol=1.7
2024-12-06 17:27:01,504 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=76.6 pTM=0.501 ipTM=0.2 tol=5.19
2024-12-06 17:29:41,926 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=76.8 pTM=0.503 ipTM=0.197 tol=3.41
2024-12-06 17:32:22,367 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=76.8 pTM=0.503 ipTM=0.197 tol=2.26
2024-12-06 17:35:02,780 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=76.7 pTM=0.504 ipTM=0.196 tol=2.2
2024-12-06 17:37:43,181 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=76.7 pTM=0.501 ipTM=0.198 tol=3.02
2024-12-06 17:40:23,622 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=76.8 pTM=0.508 ipTM=0.199 tol=3.83
2024-12-06 17:43:03,993 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=76.8 pTM=0.506 ipTM=0.199 tol=2.3
2024-12-06 17:45:44,402 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=76.7 pTM=0.503 ipTM=0.198 tol=2.02
2024-12-06 17:48:24,787 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=76.6 pTM=0.503 ipTM=0.198 tol=2.5
2024-12-06 17:51:05,210 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=76.8 pTM=0.509 ipTM=0.2 tol=3.82
2024-12-06 17:53:45,555 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=76.6 pTM=0.505 ipTM=0.198 tol=3.29
2024-12-06 17:56:25,934 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=76.4 pTM=0.506 ipTM=0.2 tol=2.79
2024-12-06 17:59:06,331 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=76.6 pTM=0.504 ipTM=0.197 tol=2.57
2024-12-06 18:01:46,739 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=76.5 pTM=0.501 ipTM=0.198 tol=2.78
2024-12-06 18:04:27,164 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=76.7 pTM=0.505 ipTM=0.197 tol=2.11
2024-12-06 18:04:27,167 alphafold2_multimer_v3_model_5_seed_000 took 4972.3s (30 recycles)
2024-12-06 18:04:29,552 reranking models by 'multimer' metric
2024-12-06 18:04:34,315 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 18:07:36,260 Relaxation took 186.7s
2024-12-06 18:07:36,260 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=77.4 pTM=0.509 ipTM=0.226
2024-12-06 18:12:02,731 Relaxation took 266.5s
2024-12-06 18:12:02,731 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.7 pTM=0.505 ipTM=0.197
2024-12-06 18:14:06,130 Relaxation took 123.4s
2024-12-06 18:14:06,130 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78 pTM=0.491 ipTM=0.197
2024-12-06 18:17:46,820 Relaxation took 220.7s
2024-12-06 18:17:46,821 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.2 pTM=0.507 ipTM=0.189
2024-12-06 18:22:32,674 Relaxation took 285.9s
2024-12-06 18:22:32,674 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=77.2 pTM=0.505 ipTM=0.183
2024-12-06 18:22:37,678 Done