2024-12-06 11:15:56,995 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 11:15:57,303 Running on GPU
2024-12-06 11:16:00,833 Found 6 citations for tools or databases
2024-12-06 11:16:00,833 Query 1/1: HERC5_CCDC59 (length 1265)
2024-12-06 11:16:01,132 Sleeping for 10s. Reason: PENDING
2024-12-06 11:16:11,398 Sleeping for 10s. Reason: RUNNING
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2024-12-06 11:17:18,475 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:17:27,735 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:17:33,994 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:17:40,246 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:17:49,515 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:17:55,775 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:18:02,027 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:18:12,285 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:18:20,540 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:18:25,793 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:18:32,053 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:18:40,311 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:18:48,573 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:18:58,839 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:19:04,092 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:19:11,345 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:19:22,622 Sleeping for 10s. Reason: PENDING
2024-12-06 11:19:32,880 Sleeping for 8s. Reason: PENDING
2024-12-06 11:19:41,145 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:19:46,396 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:19:52,804 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:19:59,061 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:20:09,320 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:20:16,570 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:20:23,827 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:20:32,086 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:20:38,339 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:20:46,592 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:20:52,846 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:21:03,110 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:21:13,369 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:21:19,621 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:21:28,892 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:21:39,151 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:21:44,405 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:21:55,201 Setting max_seq=508, max_extra_seq=2048
2024-12-06 11:25:23,867 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.2 pTM=0.727 ipTM=0.171
2024-12-06 11:26:05,005 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.2 pTM=0.74 ipTM=0.194 tol=9.74
2024-12-06 11:26:46,367 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.7 pTM=0.738 ipTM=0.197 tol=5.61
2024-12-06 11:27:27,844 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=75.6 pTM=0.735 ipTM=0.2 tol=4.68
2024-12-06 11:28:09,350 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.4 pTM=0.734 ipTM=0.201 tol=2.6
2024-12-06 11:28:50,860 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.8 pTM=0.736 ipTM=0.206 tol=2.54
2024-12-06 11:29:32,349 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=75.6 pTM=0.733 ipTM=0.208 tol=3.53
2024-12-06 11:30:13,849 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.8 pTM=0.735 ipTM=0.21 tol=2.95
2024-12-06 11:30:55,338 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.6 pTM=0.733 ipTM=0.209 tol=1.71
2024-12-06 11:31:36,856 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.8 pTM=0.737 ipTM=0.21 tol=2.49
2024-12-06 11:32:18,345 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=75.7 pTM=0.737 ipTM=0.209 tol=3.04
2024-12-06 11:32:59,811 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=75.7 pTM=0.736 ipTM=0.21 tol=3.42
2024-12-06 11:33:41,261 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=75.8 pTM=0.733 ipTM=0.212 tol=1.79
2024-12-06 11:34:22,730 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=75.6 pTM=0.731 ipTM=0.211 tol=1.31
2024-12-06 11:35:04,199 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=75.5 pTM=0.733 ipTM=0.208 tol=1.57
2024-12-06 11:35:45,690 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=75.7 pTM=0.733 ipTM=0.211 tol=3.67
2024-12-06 11:36:27,185 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=75.4 pTM=0.729 ipTM=0.209 tol=2.79
2024-12-06 11:37:08,636 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=75.2 pTM=0.727 ipTM=0.211 tol=1.4
2024-12-06 11:37:50,138 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=75.6 pTM=0.733 ipTM=0.21 tol=1.76
2024-12-06 11:38:31,660 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=75.6 pTM=0.734 ipTM=0.209 tol=0.963
2024-12-06 11:39:13,159 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=75.4 pTM=0.731 ipTM=0.206 tol=0.99
2024-12-06 11:39:54,666 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=75.4 pTM=0.729 ipTM=0.208 tol=4.27
2024-12-06 11:40:36,211 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=75.5 pTM=0.732 ipTM=0.213 tol=4.1
2024-12-06 11:41:17,744 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=75.5 pTM=0.734 ipTM=0.21 tol=1.43
2024-12-06 11:41:59,292 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=75.3 pTM=0.732 ipTM=0.207 tol=1.74
2024-12-06 11:42:40,848 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=75.5 pTM=0.734 ipTM=0.209 tol=0.955
2024-12-06 11:43:22,399 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=75.6 pTM=0.732 ipTM=0.21 tol=1.96
2024-12-06 11:44:03,896 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=75.4 pTM=0.73 ipTM=0.21 tol=1.91
2024-12-06 11:44:45,374 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=75.6 pTM=0.735 ipTM=0.212 tol=2.14
2024-12-06 11:45:26,834 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=75.5 pTM=0.734 ipTM=0.21 tol=3.3
2024-12-06 11:46:08,237 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=75.2 pTM=0.723 ipTM=0.205 tol=3.28
2024-12-06 11:46:08,238 alphafold2_multimer_v3_model_1_seed_000 took 1447.8s (30 recycles)
2024-12-06 11:46:50,782 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.4 pTM=0.733 ipTM=0.213
2024-12-06 11:47:32,397 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=75.2 pTM=0.743 ipTM=0.216 tol=9.91
2024-12-06 11:48:13,973 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.7 pTM=0.744 ipTM=0.226 tol=6.12
2024-12-06 11:48:55,537 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.7 pTM=0.742 ipTM=0.225 tol=5.75
2024-12-06 11:49:37,081 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.8 pTM=0.745 ipTM=0.235 tol=3.73
2024-12-06 11:50:18,620 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75.8 pTM=0.743 ipTM=0.233 tol=4.33
2024-12-06 11:51:00,111 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=75.8 pTM=0.743 ipTM=0.235 tol=3.82
2024-12-06 11:51:41,636 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.8 pTM=0.742 ipTM=0.239 tol=2.51
2024-12-06 11:52:23,099 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.6 pTM=0.739 ipTM=0.241 tol=2.68
2024-12-06 11:53:04,632 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=75.9 pTM=0.744 ipTM=0.237 tol=3.63
2024-12-06 11:53:46,142 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=75.9 pTM=0.742 ipTM=0.239 tol=2.61
2024-12-06 11:54:27,722 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=75.9 pTM=0.743 ipTM=0.236 tol=2.93
2024-12-06 11:55:09,308 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=76 pTM=0.742 ipTM=0.241 tol=2.38
2024-12-06 11:55:50,800 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=75.8 pTM=0.736 ipTM=0.232 tol=2.26
2024-12-06 11:56:32,291 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=75.7 pTM=0.741 ipTM=0.241 tol=1.82
2024-12-06 11:57:13,769 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=75.8 pTM=0.741 ipTM=0.234 tol=2.94
2024-12-06 11:57:55,234 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=75.6 pTM=0.735 ipTM=0.24 tol=2.19
2024-12-06 11:58:36,773 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=75.6 pTM=0.735 ipTM=0.236 tol=2.58
2024-12-06 11:59:18,309 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=75.7 pTM=0.74 ipTM=0.244 tol=1.68
2024-12-06 11:59:59,853 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=75.6 pTM=0.74 ipTM=0.238 tol=2.72
2024-12-06 12:00:41,337 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=75.4 pTM=0.735 ipTM=0.238 tol=2.24
2024-12-06 12:01:22,851 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=75.6 pTM=0.735 ipTM=0.23 tol=2.84
2024-12-06 12:02:04,365 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=75.5 pTM=0.74 ipTM=0.238 tol=1.92
2024-12-06 12:02:45,929 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=75.4 pTM=0.739 ipTM=0.235 tol=2.44
2024-12-06 12:03:27,468 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=75.4 pTM=0.74 ipTM=0.24 tol=2.56
2024-12-06 12:04:09,049 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=75.5 pTM=0.739 ipTM=0.234 tol=3.66
2024-12-06 12:04:50,613 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=75.6 pTM=0.739 ipTM=0.238 tol=2.57
2024-12-06 12:05:32,214 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=75.6 pTM=0.74 ipTM=0.232 tol=4.04
2024-12-06 12:06:13,780 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=75.6 pTM=0.739 ipTM=0.238 tol=2.14
2024-12-06 12:06:55,310 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=75.6 pTM=0.74 ipTM=0.238 tol=3.42
2024-12-06 12:07:36,803 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=75.4 pTM=0.73 ipTM=0.233 tol=2.14
2024-12-06 12:07:36,804 alphafold2_multimer_v3_model_2_seed_000 took 1287.6s (30 recycles)
2024-12-06 12:08:19,348 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.4 pTM=0.723 ipTM=0.207
2024-12-06 12:09:00,949 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.4 pTM=0.734 ipTM=0.248 tol=9.1
2024-12-06 12:09:42,540 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75.4 pTM=0.731 ipTM=0.221 tol=4.52
2024-12-06 12:10:24,095 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=75.8 pTM=0.729 ipTM=0.262 tol=4.22
2024-12-06 12:11:05,685 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=75.8 pTM=0.732 ipTM=0.22 tol=5.2
2024-12-06 12:11:47,297 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.2 pTM=0.734 ipTM=0.229 tol=4.91
2024-12-06 12:12:28,874 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=75.9 pTM=0.731 ipTM=0.218 tol=3.19
2024-12-06 12:13:10,485 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=76.2 pTM=0.734 ipTM=0.228 tol=2.89
2024-12-06 12:13:52,040 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=76.1 pTM=0.731 ipTM=0.225 tol=1.33
2024-12-06 12:14:33,583 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=75.8 pTM=0.728 ipTM=0.225 tol=2.16
2024-12-06 12:15:15,139 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=75.9 pTM=0.728 ipTM=0.232 tol=1.85
2024-12-06 12:15:56,765 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=75.9 pTM=0.729 ipTM=0.232 tol=1.96
2024-12-06 12:16:38,343 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=75.8 pTM=0.725 ipTM=0.231 tol=1.29
2024-12-06 12:17:19,897 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=75.6 pTM=0.723 ipTM=0.228 tol=1.34
2024-12-06 12:18:01,437 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=75.9 pTM=0.726 ipTM=0.235 tol=2.09
2024-12-06 12:18:42,968 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=75.8 pTM=0.725 ipTM=0.225 tol=1.29
2024-12-06 12:19:24,471 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=75.7 pTM=0.722 ipTM=0.232 tol=1.32
2024-12-06 12:20:06,024 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=75.7 pTM=0.724 ipTM=0.226 tol=2.79
2024-12-06 12:20:47,578 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=75.7 pTM=0.728 ipTM=0.224 tol=2.9
2024-12-06 12:21:29,157 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=76.1 pTM=0.732 ipTM=0.233 tol=1.23
2024-12-06 12:22:10,675 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=75.7 pTM=0.724 ipTM=0.222 tol=1.21
2024-12-06 12:22:52,230 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=75.9 pTM=0.728 ipTM=0.217 tol=1.47
2024-12-06 12:23:33,697 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=75.6 pTM=0.723 ipTM=0.224 tol=1.51
2024-12-06 12:24:15,220 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=75.9 pTM=0.729 ipTM=0.217 tol=1.38
2024-12-06 12:24:56,757 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=75.9 pTM=0.732 ipTM=0.226 tol=1.08
2024-12-06 12:25:38,276 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=76 pTM=0.73 ipTM=0.233 tol=0.886
2024-12-06 12:26:19,794 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=75.8 pTM=0.724 ipTM=0.218 tol=1.47
2024-12-06 12:27:01,311 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=75.8 pTM=0.725 ipTM=0.214 tol=1.44
2024-12-06 12:27:42,841 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=75.8 pTM=0.727 ipTM=0.228 tol=1.88
2024-12-06 12:28:24,340 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=75.7 pTM=0.723 ipTM=0.239 tol=2.1
2024-12-06 12:29:05,898 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=75.8 pTM=0.726 ipTM=0.226 tol=1.85
2024-12-06 12:29:05,899 alphafold2_multimer_v3_model_3_seed_000 took 1288.1s (30 recycles)
2024-12-06 12:29:48,451 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=73.4 pTM=0.737 ipTM=0.209
2024-12-06 12:30:30,060 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.9 pTM=0.747 ipTM=0.213 tol=8.81
2024-12-06 12:31:11,685 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.4 pTM=0.743 ipTM=0.209 tol=8.31
2024-12-06 12:31:53,277 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.2 pTM=0.736 ipTM=0.204 tol=2.56
2024-12-06 12:32:34,864 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.4 pTM=0.737 ipTM=0.201 tol=3.49
2024-12-06 12:33:16,449 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.8 pTM=0.74 ipTM=0.208 tol=4.16
2024-12-06 12:33:58,005 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.5 pTM=0.735 ipTM=0.199 tol=4.41
2024-12-06 12:34:39,546 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.6 pTM=0.738 ipTM=0.21 tol=4.89
2024-12-06 12:35:21,073 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.5 pTM=0.735 ipTM=0.193 tol=4.31
2024-12-06 12:36:02,636 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.8 pTM=0.74 ipTM=0.209 tol=4.18
2024-12-06 12:36:44,163 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.5 pTM=0.734 ipTM=0.193 tol=4.34
2024-12-06 12:37:25,689 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.6 pTM=0.737 ipTM=0.206 tol=1.83
2024-12-06 12:38:07,199 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.6 pTM=0.734 ipTM=0.199 tol=1.97
2024-12-06 12:38:48,701 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=75.5 pTM=0.734 ipTM=0.206 tol=4.61
2024-12-06 12:39:30,270 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75.8 pTM=0.738 ipTM=0.197 tol=3.12
2024-12-06 12:40:11,811 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=75.6 pTM=0.738 ipTM=0.212 tol=2.25
2024-12-06 12:40:53,309 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=75.5 pTM=0.733 ipTM=0.2 tol=1.51
2024-12-06 12:41:34,773 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=75.1 pTM=0.73 ipTM=0.208 tol=1.38
2024-12-06 12:42:16,261 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=75.4 pTM=0.733 ipTM=0.198 tol=1.62
2024-12-06 12:42:57,725 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=75.6 pTM=0.737 ipTM=0.206 tol=3.39
2024-12-06 12:43:39,179 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=75.2 pTM=0.729 ipTM=0.193 tol=3.71
2024-12-06 12:44:20,657 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=75.6 pTM=0.738 ipTM=0.209 tol=2.04
2024-12-06 12:45:02,172 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=75.6 pTM=0.735 ipTM=0.197 tol=1.94
2024-12-06 12:45:43,648 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=75.6 pTM=0.737 ipTM=0.211 tol=4.23
2024-12-06 12:46:25,147 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=75.6 pTM=0.736 ipTM=0.205 tol=1.98
2024-12-06 12:47:06,660 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=75.5 pTM=0.736 ipTM=0.209 tol=2.28
2024-12-06 12:47:48,147 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=75.4 pTM=0.732 ipTM=0.2 tol=2.62
2024-12-06 12:48:29,671 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=75.5 pTM=0.737 ipTM=0.219 tol=2.83
2024-12-06 12:49:11,187 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=75.4 pTM=0.735 ipTM=0.209 tol=1.87
2024-12-06 12:49:52,711 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=75.4 pTM=0.735 ipTM=0.217 tol=3.21
2024-12-06 12:50:34,237 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=75.3 pTM=0.729 ipTM=0.205 tol=3.68
2024-12-06 12:50:34,239 alphafold2_multimer_v3_model_4_seed_000 took 1287.4s (30 recycles)
2024-12-06 12:51:16,749 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.2 pTM=0.724 ipTM=0.195
2024-12-06 12:51:58,470 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.8 pTM=0.739 ipTM=0.206 tol=5.68
2024-12-06 12:52:40,167 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75 pTM=0.736 ipTM=0.206 tol=4.3
2024-12-06 12:53:21,808 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.9 pTM=0.732 ipTM=0.2 tol=2.08
2024-12-06 12:54:03,501 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.2 pTM=0.734 ipTM=0.202 tol=4.12
2024-12-06 12:54:45,134 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.1 pTM=0.731 ipTM=0.201 tol=3.92
2024-12-06 12:55:26,733 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.1 pTM=0.732 ipTM=0.203 tol=5.6
2024-12-06 12:56:08,385 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.1 pTM=0.73 ipTM=0.196 tol=4.06
2024-12-06 12:56:49,991 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=75.1 pTM=0.73 ipTM=0.208 tol=4.68
2024-12-06 12:57:31,582 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=74.9 pTM=0.73 ipTM=0.199 tol=2.8
2024-12-06 12:58:13,185 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=74.8 pTM=0.727 ipTM=0.195 tol=2.89
2024-12-06 12:58:54,817 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=74.9 pTM=0.727 ipTM=0.195 tol=3.97
2024-12-06 12:59:36,380 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=74.9 pTM=0.724 ipTM=0.195 tol=3.01
2024-12-06 13:00:17,993 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=74.9 pTM=0.724 ipTM=0.193 tol=3.12
2024-12-06 13:00:59,624 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=75.1 pTM=0.729 ipTM=0.199 tol=3.8
2024-12-06 13:01:41,219 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=74.8 pTM=0.725 ipTM=0.192 tol=2.75
2024-12-06 13:02:22,743 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=74.8 pTM=0.72 ipTM=0.194 tol=3.92
2024-12-06 13:03:04,285 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=74.8 pTM=0.723 ipTM=0.191 tol=2.63
2024-12-06 13:03:45,816 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=74.7 pTM=0.724 ipTM=0.192 tol=1.92
2024-12-06 13:04:27,346 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=75.2 pTM=0.729 ipTM=0.194 tol=4.16
2024-12-06 13:05:08,784 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=74.7 pTM=0.718 ipTM=0.195 tol=4.89
2024-12-06 13:05:50,263 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=75 pTM=0.726 ipTM=0.197 tol=2.66
2024-12-06 13:06:31,687 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=74.9 pTM=0.726 ipTM=0.216 tol=6.53
2024-12-06 13:07:13,177 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=74.9 pTM=0.727 ipTM=0.202 tol=2.43
2024-12-06 13:07:54,691 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=75 pTM=0.728 ipTM=0.214 tol=2.19
2024-12-06 13:08:36,194 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=75 pTM=0.727 ipTM=0.206 tol=3.48
2024-12-06 13:09:17,723 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=75.2 pTM=0.73 ipTM=0.228 tol=4.59
2024-12-06 13:09:59,326 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=75.1 pTM=0.727 ipTM=0.226 tol=4.93
2024-12-06 13:10:40,904 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=74.9 pTM=0.725 ipTM=0.215 tol=4.17
2024-12-06 13:11:22,456 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=75 pTM=0.726 ipTM=0.239 tol=2.26
2024-12-06 13:12:03,973 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=75.2 pTM=0.725 ipTM=0.215 tol=1.04
2024-12-06 13:12:03,974 alphafold2_multimer_v3_model_5_seed_000 took 1288.8s (30 recycles)
2024-12-06 13:12:04,924 reranking models by 'multimer' metric
2024-12-06 13:12:09,008 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 13:13:55,264 Relaxation took 110.3s
2024-12-06 13:13:55,264 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.4 pTM=0.73 ipTM=0.233
2024-12-06 13:16:00,193 Relaxation took 124.9s
2024-12-06 13:16:00,193 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=75.8 pTM=0.726 ipTM=0.226
2024-12-06 13:18:16,115 Relaxation took 135.9s
2024-12-06 13:18:16,115 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=75.2 pTM=0.725 ipTM=0.215
2024-12-06 13:20:29,270 Relaxation took 133.2s
2024-12-06 13:20:29,270 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.3 pTM=0.729 ipTM=0.205
2024-12-06 13:22:36,923 Relaxation took 127.7s
2024-12-06 13:22:36,923 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75.2 pTM=0.723 ipTM=0.205
2024-12-06 13:22:39,508 Done