2024-12-06 11:20:22,463 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 11:20:22,770 Running on GPU
2024-12-06 11:20:26,434 Found 6 citations for tools or databases
2024-12-06 11:20:26,434 Query 1/1: HERC5_OASL (length 1538)
2024-12-06 11:20:26,732 Sleeping for 10s. Reason: PENDING
2024-12-06 11:20:36,990 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:20:43,244 Sleeping for 9s. Reason: RUNNING
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2024-12-06 11:22:11,099 Sleeping for 5s. Reason: RUNNING
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2024-12-06 11:22:26,656 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:22:36,914 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:22:44,180 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:22:54,444 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:23:03,711 Sleeping for 9s. Reason: RUNNING
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2024-12-06 11:23:20,227 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:23:30,492 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:23:35,766 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:23:41,029 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:23:46,282 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:23:53,537 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:24:04,959 Sleeping for 7s. Reason: PENDING
2024-12-06 11:24:12,220 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:24:21,481 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:24:27,741 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:24:38,002 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:24:44,265 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:24:53,522 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:25:03,787 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:25:09,038 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:25:15,298 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:25:20,550 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:25:27,804 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:25:33,057 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:25:40,317 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:25:47,576 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:25:56,839 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:26:05,102 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:26:15,355 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:26:23,611 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:26:37,964 Setting max_seq=508, max_extra_seq=2048
2024-12-06 11:30:27,510 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=81.8 pTM=0.647 ipTM=0.32
2024-12-06 11:31:37,628 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.1 pTM=0.618 ipTM=0.19 tol=8.33
2024-12-06 11:32:48,047 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.1 pTM=0.614 ipTM=0.192 tol=9.36
2024-12-06 11:33:58,704 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.2 pTM=0.615 ipTM=0.187 tol=13.8
2024-12-06 11:35:09,175 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.4 pTM=0.616 ipTM=0.188 tol=13.8
2024-12-06 11:36:19,687 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=83.5 pTM=0.616 ipTM=0.194 tol=2.81
2024-12-06 11:37:30,142 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=83.3 pTM=0.614 ipTM=0.196 tol=1.5
2024-12-06 11:38:40,556 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=83.6 pTM=0.617 ipTM=0.2 tol=1.62
2024-12-06 11:39:51,029 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83.4 pTM=0.615 ipTM=0.2 tol=1.58
2024-12-06 11:41:01,544 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=83.6 pTM=0.619 ipTM=0.203 tol=2.28
2024-12-06 11:42:11,945 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=83.6 pTM=0.614 ipTM=0.201 tol=1.84
2024-12-06 11:43:22,356 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=83.7 pTM=0.621 ipTM=0.206 tol=1.48
2024-12-06 11:44:32,866 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=83.5 pTM=0.615 ipTM=0.203 tol=0.986
2024-12-06 11:45:43,364 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=83.4 pTM=0.621 ipTM=0.212 tol=1.85
2024-12-06 11:46:53,846 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=83.4 pTM=0.62 ipTM=0.21 tol=1.56
2024-12-06 11:48:04,262 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=83.6 pTM=0.62 ipTM=0.211 tol=1.15
2024-12-06 11:49:14,691 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=83.4 pTM=0.617 ipTM=0.207 tol=0.837
2024-12-06 11:50:25,287 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=83.2 pTM=0.62 ipTM=0.213 tol=1.36
2024-12-06 11:51:35,754 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=83.2 pTM=0.616 ipTM=0.21 tol=0.693
2024-12-06 11:52:46,129 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=83.4 pTM=0.623 ipTM=0.219 tol=2.67
2024-12-06 11:53:56,607 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=83.2 pTM=0.622 ipTM=0.215 tol=0.852
2024-12-06 11:55:07,058 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=83.1 pTM=0.622 ipTM=0.215 tol=1.19
2024-12-06 11:56:17,545 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=83.2 pTM=0.624 ipTM=0.217 tol=1.03
2024-12-06 11:57:28,035 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=83.6 pTM=0.625 ipTM=0.22 tol=1.77
2024-12-06 11:58:38,411 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=83.4 pTM=0.628 ipTM=0.223 tol=1.41
2024-12-06 11:59:48,806 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=83.4 pTM=0.623 ipTM=0.214 tol=1.55
2024-12-06 12:00:59,251 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=83.4 pTM=0.619 ipTM=0.209 tol=1.1
2024-12-06 12:02:09,666 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=83.5 pTM=0.62 ipTM=0.217 tol=0.886
2024-12-06 12:03:20,155 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=83.3 pTM=0.622 ipTM=0.215 tol=1.38
2024-12-06 12:04:30,512 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=83.5 pTM=0.624 ipTM=0.217 tol=1.7
2024-12-06 12:05:40,818 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=83.2 pTM=0.621 ipTM=0.216 tol=1.46
2024-12-06 12:05:40,819 alphafold2_multimer_v3_model_1_seed_000 took 2337.7s (30 recycles)
2024-12-06 12:06:52,676 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80.2 pTM=0.618 ipTM=0.196
2024-12-06 12:08:03,175 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.4 pTM=0.634 ipTM=0.211 tol=8.03
2024-12-06 12:09:13,759 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.1 pTM=0.628 ipTM=0.215 tol=10
2024-12-06 12:10:24,373 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.1 pTM=0.63 ipTM=0.212 tol=6.03
2024-12-06 12:11:35,032 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.4 pTM=0.632 ipTM=0.215 tol=3.43
2024-12-06 12:12:45,624 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.5 pTM=0.629 ipTM=0.213 tol=0.749
2024-12-06 12:13:56,262 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.2 pTM=0.626 ipTM=0.212 tol=2.67
2024-12-06 12:15:06,954 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.4 pTM=0.628 ipTM=0.211 tol=0.582
2024-12-06 12:16:17,603 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.4 pTM=0.626 ipTM=0.21 tol=3.72
2024-12-06 12:17:28,244 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=84.6 pTM=0.629 ipTM=0.233 tol=1.44
2024-12-06 12:18:38,783 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=84.4 pTM=0.626 ipTM=0.216 tol=1.6
2024-12-06 12:19:49,354 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=84.7 pTM=0.63 ipTM=0.213 tol=3.72
2024-12-06 12:20:59,916 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=84.5 pTM=0.627 ipTM=0.237 tol=3.02
2024-12-06 12:22:10,512 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=84.6 pTM=0.629 ipTM=0.223 tol=1.3
2024-12-06 12:23:21,060 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=84.5 pTM=0.629 ipTM=0.217 tol=1.51
2024-12-06 12:24:31,679 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=84.4 pTM=0.628 ipTM=0.22 tol=3.96
2024-12-06 12:25:42,298 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=84.5 pTM=0.628 ipTM=0.221 tol=2.75
2024-12-06 12:26:52,910 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=84.4 pTM=0.627 ipTM=0.217 tol=1.93
2024-12-06 12:28:03,478 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=84.5 pTM=0.627 ipTM=0.218 tol=2.5
2024-12-06 12:29:14,028 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=84.6 pTM=0.626 ipTM=0.22 tol=2.23
2024-12-06 12:30:24,606 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=84.2 pTM=0.626 ipTM=0.212 tol=2.72
2024-12-06 12:31:35,192 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=84.2 pTM=0.625 ipTM=0.222 tol=3.36
2024-12-06 12:32:45,778 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=84.5 pTM=0.627 ipTM=0.24 tol=1.33
2024-12-06 12:33:56,348 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=84.5 pTM=0.628 ipTM=0.233 tol=0.779
2024-12-06 12:35:06,905 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=84.4 pTM=0.627 ipTM=0.214 tol=0.906
2024-12-06 12:36:17,485 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=84.5 pTM=0.628 ipTM=0.228 tol=2.04
2024-12-06 12:37:28,120 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=84.5 pTM=0.627 ipTM=0.235 tol=1.55
2024-12-06 12:38:38,701 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=84.6 pTM=0.626 ipTM=0.228 tol=1.4
2024-12-06 12:39:49,212 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=84.4 pTM=0.627 ipTM=0.219 tol=1.18
2024-12-06 12:40:59,579 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=84.8 pTM=0.628 ipTM=0.246 tol=2.13
2024-12-06 12:42:09,965 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=84.7 pTM=0.628 ipTM=0.249 tol=0.998
2024-12-06 12:42:09,966 alphafold2_multimer_v3_model_2_seed_000 took 2187.8s (30 recycles)
2024-12-06 12:43:21,839 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=80.4 pTM=0.609 ipTM=0.188
2024-12-06 12:44:32,358 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=82.1 pTM=0.623 ipTM=0.196 tol=6.58
2024-12-06 12:45:42,964 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=83.4 pTM=0.623 ipTM=0.198 tol=5.74
2024-12-06 12:46:53,404 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=83.9 pTM=0.623 ipTM=0.2 tol=1.65
2024-12-06 12:48:04,003 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=84 pTM=0.62 ipTM=0.196 tol=3.66
2024-12-06 12:49:14,598 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.1 pTM=0.621 ipTM=0.2 tol=3.11
2024-12-06 12:50:25,127 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=84.2 pTM=0.62 ipTM=0.198 tol=3.43
2024-12-06 12:51:35,642 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=84.2 pTM=0.623 ipTM=0.202 tol=3.56
2024-12-06 12:52:46,220 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=84.2 pTM=0.62 ipTM=0.2 tol=3.71
2024-12-06 12:53:56,706 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=84.3 pTM=0.62 ipTM=0.202 tol=2.82
2024-12-06 12:55:07,282 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=84.4 pTM=0.618 ipTM=0.197 tol=5.44
2024-12-06 12:56:17,853 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=84.2 pTM=0.613 ipTM=0.204 tol=7.82
2024-12-06 12:57:28,477 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=84.1 pTM=0.615 ipTM=0.202 tol=3.22
2024-12-06 12:58:39,061 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=84.1 pTM=0.612 ipTM=0.208 tol=3.7
2024-12-06 12:59:49,528 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=84.1 pTM=0.607 ipTM=0.2 tol=6.05
2024-12-06 13:01:00,086 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=84.2 pTM=0.614 ipTM=0.214 tol=7.19
2024-12-06 13:02:10,573 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=84.1 pTM=0.611 ipTM=0.198 tol=4.56
2024-12-06 13:03:21,032 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=84.1 pTM=0.605 ipTM=0.193 tol=5.11
2024-12-06 13:04:31,491 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=84.1 pTM=0.609 ipTM=0.198 tol=2.62
2024-12-06 13:05:41,990 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=84.2 pTM=0.612 ipTM=0.224 tol=2.51
2024-12-06 13:06:52,575 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=83.8 pTM=0.609 ipTM=0.204 tol=2.39
2024-12-06 13:08:03,060 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=84.1 pTM=0.608 ipTM=0.193 tol=5.41
2024-12-06 13:09:13,583 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=83.9 pTM=0.61 ipTM=0.209 tol=2.78
2024-12-06 13:10:24,132 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=83.9 pTM=0.612 ipTM=0.216 tol=2.34
2024-12-06 13:11:34,701 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=84.1 pTM=0.612 ipTM=0.208 tol=2.11
2024-12-06 13:12:45,325 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=84 pTM=0.611 ipTM=0.206 tol=2.07
2024-12-06 13:13:55,889 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=83.9 pTM=0.61 ipTM=0.198 tol=2.74
2024-12-06 13:15:06,332 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=84.2 pTM=0.605 ipTM=0.183 tol=9.07
2024-12-06 13:16:16,870 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=83.9 pTM=0.61 ipTM=0.201 tol=9.36
2024-12-06 13:17:27,335 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=84.1 pTM=0.615 ipTM=0.202 tol=2.98
2024-12-06 13:18:37,715 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=84 pTM=0.605 ipTM=0.193 tol=13
2024-12-06 13:18:37,717 alphafold2_multimer_v3_model_3_seed_000 took 2186.3s (30 recycles)
2024-12-06 13:19:49,504 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=80.9 pTM=0.62 ipTM=0.187
2024-12-06 13:21:00,057 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=84 pTM=0.631 ipTM=0.181 tol=8.39
2024-12-06 13:22:10,583 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=83.8 pTM=0.627 ipTM=0.182 tol=5.43
2024-12-06 13:23:21,062 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=84 pTM=0.628 ipTM=0.187 tol=3.33
2024-12-06 13:24:31,556 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=84.1 pTM=0.625 ipTM=0.183 tol=5.14
2024-12-06 13:25:42,038 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.2 pTM=0.625 ipTM=0.184 tol=3.84
2024-12-06 13:26:52,553 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.1 pTM=0.623 ipTM=0.183 tol=4.08
2024-12-06 13:28:02,997 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.2 pTM=0.625 ipTM=0.186 tol=5.96
2024-12-06 13:29:13,581 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84.2 pTM=0.621 ipTM=0.181 tol=4.91
2024-12-06 13:30:24,163 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84.2 pTM=0.625 ipTM=0.187 tol=5.08
2024-12-06 13:31:34,784 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=84.6 pTM=0.624 ipTM=0.182 tol=3.62
2024-12-06 13:32:45,334 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=84.6 pTM=0.628 ipTM=0.188 tol=3.82
2024-12-06 13:33:55,921 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=84.3 pTM=0.62 ipTM=0.181 tol=4.58
2024-12-06 13:35:06,595 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=84.4 pTM=0.625 ipTM=0.186 tol=3.85
2024-12-06 13:36:17,153 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=84.3 pTM=0.622 ipTM=0.182 tol=3.39
2024-12-06 13:37:27,600 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=84.3 pTM=0.623 ipTM=0.188 tol=4.03
2024-12-06 13:38:38,107 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=84.4 pTM=0.622 ipTM=0.18 tol=3.1
2024-12-06 13:39:48,594 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=84.3 pTM=0.624 ipTM=0.188 tol=2.98
2024-12-06 13:40:59,213 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=84.5 pTM=0.622 ipTM=0.184 tol=3.39
2024-12-06 13:42:09,713 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=84.4 pTM=0.625 ipTM=0.19 tol=4.04
2024-12-06 13:43:20,123 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=84.4 pTM=0.623 ipTM=0.187 tol=2.82
2024-12-06 13:44:30,523 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=84.2 pTM=0.625 ipTM=0.19 tol=2.39
2024-12-06 13:45:41,005 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=84.5 pTM=0.623 ipTM=0.183 tol=3.55
2024-12-06 13:46:51,595 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=84.4 pTM=0.625 ipTM=0.189 tol=4.11
2024-12-06 13:48:02,217 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=84.6 pTM=0.623 ipTM=0.183 tol=4.4
2024-12-06 13:49:12,817 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=84.2 pTM=0.624 ipTM=0.192 tol=4.25
2024-12-06 13:50:23,415 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=84.3 pTM=0.622 ipTM=0.185 tol=4.02
2024-12-06 13:51:34,022 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=84.4 pTM=0.624 ipTM=0.188 tol=4.18
2024-12-06 13:52:44,637 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=84.6 pTM=0.623 ipTM=0.183 tol=6.01
2024-12-06 13:53:55,242 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=84.3 pTM=0.624 ipTM=0.191 tol=4.53
2024-12-06 13:55:05,891 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=84.2 pTM=0.619 ipTM=0.182 tol=3.63
2024-12-06 13:55:05,893 alphafold2_multimer_v3_model_4_seed_000 took 2186.8s (30 recycles)
2024-12-06 13:56:17,929 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=80.6 pTM=0.607 ipTM=0.185
2024-12-06 13:57:28,551 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.1 pTM=0.621 ipTM=0.21 tol=4.43
2024-12-06 13:58:39,179 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=82.2 pTM=0.62 ipTM=0.198 tol=4.01
2024-12-06 13:59:49,768 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.7 pTM=0.621 ipTM=0.213 tol=3.3
2024-12-06 14:01:00,221 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.7 pTM=0.622 ipTM=0.209 tol=1.12
2024-12-06 14:02:10,608 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82.8 pTM=0.621 ipTM=0.21 tol=1.33
2024-12-06 14:03:21,025 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=82.8 pTM=0.621 ipTM=0.207 tol=1.62
2024-12-06 14:04:31,450 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=83.1 pTM=0.622 ipTM=0.206 tol=1.88
2024-12-06 14:05:41,818 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=82.9 pTM=0.621 ipTM=0.206 tol=2.18
2024-12-06 14:06:52,196 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=82.8 pTM=0.622 ipTM=0.204 tol=1.72
2024-12-06 14:08:02,452 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=82.9 pTM=0.62 ipTM=0.204 tol=1.48
2024-12-06 14:09:12,726 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=82.8 pTM=0.623 ipTM=0.207 tol=1.61
2024-12-06 14:10:23,030 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=82.4 pTM=0.619 ipTM=0.205 tol=2.29
2024-12-06 14:11:33,402 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=82.5 pTM=0.622 ipTM=0.206 tol=1.47
2024-12-06 14:12:43,868 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=82.4 pTM=0.619 ipTM=0.205 tol=0.671
2024-12-06 14:13:54,329 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=82.8 pTM=0.621 ipTM=0.204 tol=0.914
2024-12-06 14:15:04,807 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=82.5 pTM=0.615 ipTM=0.199 tol=2.06
2024-12-06 14:16:15,328 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=82.5 pTM=0.615 ipTM=0.197 tol=1.18
2024-12-06 14:17:25,820 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=82.5 pTM=0.612 ipTM=0.19 tol=6.24
2024-12-06 14:18:36,253 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=82.8 pTM=0.615 ipTM=0.212 tol=2.74
2024-12-06 14:19:46,658 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=82.5 pTM=0.611 ipTM=0.206 tol=3.95
2024-12-06 14:20:57,023 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=82.5 pTM=0.614 ipTM=0.205 tol=1.47
2024-12-06 14:22:07,363 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=82.9 pTM=0.614 ipTM=0.213 tol=1.35
2024-12-06 14:23:17,697 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=82.7 pTM=0.615 ipTM=0.215 tol=1.71
2024-12-06 14:24:28,056 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=82.6 pTM=0.615 ipTM=0.206 tol=3.18
2024-12-06 14:25:38,412 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=82.6 pTM=0.613 ipTM=0.21 tol=4.7
2024-12-06 14:26:48,800 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=82.5 pTM=0.611 ipTM=0.206 tol=1.41
2024-12-06 14:27:59,191 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=82.8 pTM=0.61 ipTM=0.211 tol=1.59
2024-12-06 14:29:09,608 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=82.7 pTM=0.612 ipTM=0.211 tol=1.13
2024-12-06 14:30:19,968 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=82.6 pTM=0.609 ipTM=0.21 tol=2.58
2024-12-06 14:31:30,319 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=82.6 pTM=0.607 ipTM=0.217 tol=1.28
2024-12-06 14:31:30,321 alphafold2_multimer_v3_model_5_seed_000 took 2183.0s (30 recycles)
2024-12-06 14:31:31,705 reranking models by 'multimer' metric
2024-12-06 14:31:34,635 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 14:32:42,067 Relaxation took 70.4s
2024-12-06 14:32:42,067 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.7 pTM=0.628 ipTM=0.249
2024-12-06 14:34:32,881 Relaxation took 110.8s
2024-12-06 14:34:32,881 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.2 pTM=0.621 ipTM=0.216
2024-12-06 14:36:52,341 Relaxation took 139.5s
2024-12-06 14:36:52,341 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=82.6 pTM=0.607 ipTM=0.217
2024-12-06 14:38:43,459 Relaxation took 111.1s
2024-12-06 14:38:43,459 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=84 pTM=0.605 ipTM=0.193
2024-12-06 14:40:53,650 Relaxation took 130.2s
2024-12-06 14:40:53,650 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=84.2 pTM=0.619 ipTM=0.182
2024-12-06 14:40:57,170 Done