2024-12-06 11:27:26,306 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 11:27:26,647 Running on GPU
2024-12-06 11:27:31,607 Found 6 citations for tools or databases
2024-12-06 11:27:31,607 Query 1/1: HERC5_PDCD11 (length 2895)
2024-12-06 11:27:31,908 Sleeping for 10s. Reason: PENDING
2024-12-06 11:27:42,168 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:27:47,422 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:27:54,689 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:28:03,949 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:28:09,218 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:28:14,476 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:28:21,734 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:28:28,998 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:28:36,257 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:28:43,518 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:28:50,777 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:28:56,037 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:29:02,300 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:29:09,559 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:29:15,819 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:29:22,082 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:29:31,348 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:29:38,609 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:29:43,866 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:29:49,121 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:29:57,384 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:30:05,645 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:30:10,903 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:30:21,164 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:30:29,425 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:30:35,678 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:30:41,936 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:30:49,192 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:30:55,451 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:31:02,705 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:31:08,965 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:31:17,227 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:31:22,480 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:31:27,731 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:31:34,994 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:31:42,249 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:31:52,511 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:31:59,765 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:32:09,022 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:32:18,278 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:32:24,541 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:32:36,552 Sleeping for 5s. Reason: PENDING
2024-12-06 11:32:41,811 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:32:52,075 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:33:02,332 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:33:11,589 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:33:20,854 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:33:28,114 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:33:35,373 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:33:42,627 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:33:49,880 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:33:56,137 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:34:03,398 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:34:08,646 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:34:18,921 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:34:29,180 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:34:35,436 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:34:41,688 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:34:50,952 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:34:58,208 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:35:03,460 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:35:09,716 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:35:19,983 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:35:30,240 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:35:37,495 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:35:44,757 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:35:52,013 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:36:02,284 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:36:07,540 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:36:17,812 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:36:24,073 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:36:30,486 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:36:36,747 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:36:54,567 Setting max_seq=508, max_extra_seq=2048
2024-12-06 11:48:08,068 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=70.4 pTM=0.444 ipTM=0.34
2024-12-06 11:56:07,082 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.2 pTM=0.455 ipTM=0.297 tol=12.4
2024-12-06 12:04:05,899 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.3 pTM=0.454 ipTM=0.36 tol=11.6
2024-12-06 12:12:04,655 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.2 pTM=0.45 ipTM=0.324 tol=6.18
2024-12-06 12:20:03,468 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.1 pTM=0.448 ipTM=0.333 tol=4.17
2024-12-06 12:28:02,249 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.2 pTM=0.446 ipTM=0.341 tol=6.57
2024-12-06 12:36:01,305 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68.9 pTM=0.435 ipTM=0.339 tol=4.34
2024-12-06 12:44:00,018 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=69.1 pTM=0.445 ipTM=0.34 tol=5.13
2024-12-06 12:51:58,980 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=69.4 pTM=0.442 ipTM=0.333 tol=3.85
2024-12-06 12:59:57,923 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=69.4 pTM=0.441 ipTM=0.346 tol=3.23
2024-12-06 13:07:56,884 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=69 pTM=0.441 ipTM=0.331 tol=5.59
2024-12-06 13:15:55,878 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=69.2 pTM=0.441 ipTM=0.315 tol=4.82
2024-12-06 13:23:54,802 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=69.4 pTM=0.449 ipTM=0.332 tol=5.04
2024-12-06 13:31:53,822 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=69.5 pTM=0.448 ipTM=0.337 tol=5.43
2024-12-06 13:39:52,637 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=69.4 pTM=0.45 ipTM=0.335 tol=4.78
2024-12-06 13:47:51,542 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=69.7 pTM=0.452 ipTM=0.346 tol=3.14
2024-12-06 13:55:50,245 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=69.6 pTM=0.452 ipTM=0.35 tol=3.12
2024-12-06 14:03:49,188 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=69.7 pTM=0.447 ipTM=0.342 tol=3.62
2024-12-06 14:11:47,901 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=69.8 pTM=0.454 ipTM=0.339 tol=7.92
2024-12-06 14:19:46,576 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=68.6 pTM=0.459 ipTM=0.339 tol=15.6
2024-12-06 14:27:45,350 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=69.9 pTM=0.458 ipTM=0.354 tol=8.17
2024-12-06 14:35:44,130 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=70.1 pTM=0.461 ipTM=0.421 tol=12.7
2024-12-06 14:43:42,564 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=70.8 pTM=0.472 ipTM=0.384 tol=7.09
2024-12-06 14:51:41,006 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=70.8 pTM=0.475 ipTM=0.365 tol=6.51
2024-12-06 14:59:39,534 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=70.7 pTM=0.473 ipTM=0.357 tol=5.34
2024-12-06 15:07:38,007 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=70.8 pTM=0.471 ipTM=0.35 tol=4.72
2024-12-06 15:15:36,564 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=71.3 pTM=0.473 ipTM=0.388 tol=3.95
2024-12-06 15:23:34,861 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=71.2 pTM=0.478 ipTM=0.398 tol=2.89
2024-12-06 15:31:33,153 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=71.5 pTM=0.481 ipTM=0.436 tol=3.86
2024-12-06 15:39:31,335 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=71.6 pTM=0.487 ipTM=0.466 tol=3.56
2024-12-06 15:47:29,578 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=71.8 pTM=0.486 ipTM=0.416 tol=3.88
2024-12-06 15:47:29,582 alphafold2_multimer_v3_model_1_seed_000 took 15030.0s (30 recycles)
2024-12-06 15:55:33,642 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=66.5 pTM=0.441 ipTM=0.233
2024-12-06 16:03:32,419 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=70.2 pTM=0.462 ipTM=0.417 tol=12.5
2024-12-06 16:11:31,320 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=70.2 pTM=0.459 ipTM=0.386 tol=8.38
2024-12-06 16:19:30,013 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=70.7 pTM=0.459 ipTM=0.383 tol=6.73
2024-12-06 16:27:28,834 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=70.8 pTM=0.458 ipTM=0.366 tol=5.25
2024-12-06 16:35:27,504 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=70.8 pTM=0.46 ipTM=0.366 tol=3.85
2024-12-06 16:43:26,258 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=70.8 pTM=0.457 ipTM=0.371 tol=3.18
2024-12-06 16:51:25,077 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=70.6 pTM=0.458 ipTM=0.368 tol=3.03
2024-12-06 16:59:23,878 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=71.1 pTM=0.458 ipTM=0.365 tol=2.3
2024-12-06 17:07:22,632 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=71.2 pTM=0.457 ipTM=0.371 tol=1.83
2024-12-06 17:15:21,289 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=71.1 pTM=0.458 ipTM=0.364 tol=2.22
2024-12-06 17:23:20,031 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=71.4 pTM=0.458 ipTM=0.364 tol=1.63
2024-12-06 17:31:18,859 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=71.1 pTM=0.46 ipTM=0.366 tol=1.8
2024-12-06 17:39:17,638 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=70.8 pTM=0.46 ipTM=0.362 tol=1.66
2024-12-06 17:47:16,447 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=71.2 pTM=0.46 ipTM=0.352 tol=1.77
2024-12-06 17:55:15,175 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=70.9 pTM=0.463 ipTM=0.362 tol=1.29
2024-12-06 18:03:13,930 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=71.2 pTM=0.461 ipTM=0.363 tol=1.48
2024-12-06 18:11:12,837 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=70.8 pTM=0.462 ipTM=0.364 tol=1.9
2024-12-06 18:19:11,482 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=71.1 pTM=0.461 ipTM=0.363 tol=2.29
2024-12-06 18:27:10,283 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=71.1 pTM=0.462 ipTM=0.361 tol=2.01
2024-12-06 18:35:09,025 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=71.1 pTM=0.461 ipTM=0.371 tol=1.95
2024-12-06 18:43:07,606 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=70.9 pTM=0.463 ipTM=0.373 tol=1.53
2024-12-06 18:51:06,305 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=71.3 pTM=0.463 ipTM=0.368 tol=1.75
2024-12-06 18:59:05,041 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=70.9 pTM=0.465 ipTM=0.37 tol=2.21
2024-12-06 19:07:03,792 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=71 pTM=0.465 ipTM=0.375 tol=2.44
2024-12-06 19:15:02,542 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=70.9 pTM=0.465 ipTM=0.38 tol=1.81
2024-12-06 19:23:01,179 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=71.2 pTM=0.463 ipTM=0.369 tol=1.76
2024-12-06 19:30:59,882 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=70.9 pTM=0.463 ipTM=0.363 tol=1.97
2024-12-06 19:38:58,583 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=70.8 pTM=0.464 ipTM=0.357 tol=1.58
2024-12-06 19:46:57,258 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=71.1 pTM=0.466 ipTM=0.366 tol=1.85
2024-12-06 19:54:55,963 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=70.9 pTM=0.465 ipTM=0.361 tol=2.61
2024-12-06 19:54:55,968 alphafold2_multimer_v3_model_2_seed_000 took 14841.7s (30 recycles)
2024-12-06 20:03:00,075 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=70.2 pTM=0.454 ipTM=0.273
2024-12-06 20:10:59,028 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=70.2 pTM=0.465 ipTM=0.423 tol=18.3
2024-12-06 20:18:58,062 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=68.6 pTM=0.453 ipTM=0.396 tol=18.2
2024-12-06 20:26:57,281 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=70.2 pTM=0.449 ipTM=0.362 tol=10.8
2024-12-06 20:34:56,297 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.2 pTM=0.452 ipTM=0.385 tol=10.7
2024-12-06 20:42:55,461 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=70.8 pTM=0.452 ipTM=0.383 tol=5.95
2024-12-06 20:50:54,437 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=71.1 pTM=0.451 ipTM=0.38 tol=4.8
2024-12-06 20:58:53,399 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=71.4 pTM=0.456 ipTM=0.415 tol=7.23
2024-12-06 21:06:52,290 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=71.7 pTM=0.455 ipTM=0.418 tol=3.67
2024-12-06 21:14:51,099 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=71.8 pTM=0.457 ipTM=0.419 tol=2.46
2024-12-06 21:22:49,811 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=71.8 pTM=0.456 ipTM=0.425 tol=2.83
2024-12-06 21:30:48,624 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=71.6 pTM=0.454 ipTM=0.41 tol=3.43
2024-12-06 21:38:47,446 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=71.5 pTM=0.46 ipTM=0.424 tol=7.44
2024-12-06 21:46:46,374 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=71.6 pTM=0.456 ipTM=0.43 tol=4.93
2024-12-06 21:54:45,252 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=71.5 pTM=0.456 ipTM=0.439 tol=4.73
2024-12-06 22:02:44,051 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=71.6 pTM=0.46 ipTM=0.454 tol=5.59
2024-12-06 22:10:42,920 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=71.7 pTM=0.457 ipTM=0.435 tol=3.14
2024-12-06 22:18:41,781 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=71.5 pTM=0.457 ipTM=0.435 tol=3.91
2024-12-06 22:26:40,600 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=71.4 pTM=0.463 ipTM=0.45 tol=6.78
2024-12-06 22:34:39,637 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=71.9 pTM=0.458 ipTM=0.435 tol=4.13
2024-12-06 22:42:38,634 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=71.7 pTM=0.457 ipTM=0.436 tol=3.8
2024-12-06 22:50:37,488 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=71.7 pTM=0.464 ipTM=0.451 tol=5.82
2024-12-06 22:58:36,355 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=71.8 pTM=0.458 ipTM=0.423 tol=4.2
2024-12-06 23:06:35,283 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=71.7 pTM=0.459 ipTM=0.442 tol=3.22
2024-12-06 23:14:34,007 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=71.8 pTM=0.466 ipTM=0.443 tol=5.13
2024-12-06 23:22:32,770 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=71.6 pTM=0.46 ipTM=0.451 tol=4.7
2024-12-06 23:30:31,642 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=71.9 pTM=0.463 ipTM=0.433 tol=3.11
2024-12-06 23:38:30,430 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=72 pTM=0.461 ipTM=0.431 tol=2.13
2024-12-06 23:46:29,290 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=71.9 pTM=0.46 ipTM=0.43 tol=2.83
2024-12-06 23:54:28,123 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=71.8 pTM=0.466 ipTM=0.446 tol=5.2
2024-12-07 00:02:27,067 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=71.9 pTM=0.46 ipTM=0.426 tol=4.35
2024-12-07 00:02:27,072 alphafold2_multimer_v3_model_3_seed_000 took 14846.3s (30 recycles)
2024-12-07 00:10:31,615 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=68.8 pTM=0.444 ipTM=0.235
2024-12-07 00:18:30,708 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=68.8 pTM=0.462 ipTM=0.401 tol=12.3
2024-12-07 00:26:29,772 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=69.6 pTM=0.465 ipTM=0.424 tol=5.97
2024-12-07 00:34:28,899 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=69.8 pTM=0.463 ipTM=0.388 tol=5.13
2024-12-07 00:42:27,881 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=69.4 pTM=0.46 ipTM=0.383 tol=3.55
2024-12-07 00:50:26,804 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=69.4 pTM=0.462 ipTM=0.386 tol=3.76
2024-12-07 00:58:25,884 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=69.3 pTM=0.46 ipTM=0.373 tol=3.68
2024-12-07 01:06:25,067 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=69.6 pTM=0.462 ipTM=0.381 tol=3.66
2024-12-07 01:14:24,072 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=69.8 pTM=0.461 ipTM=0.371 tol=2.42
2024-12-07 01:22:23,247 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=69.9 pTM=0.459 ipTM=0.376 tol=1.96
2024-12-07 01:30:22,334 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=69.6 pTM=0.461 ipTM=0.37 tol=3.07
2024-12-07 01:38:21,331 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=69.8 pTM=0.46 ipTM=0.366 tol=4.37
2024-12-07 01:46:20,443 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=69.5 pTM=0.46 ipTM=0.365 tol=3.63
2024-12-07 01:54:19,457 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=69.6 pTM=0.461 ipTM=0.367 tol=6.71
2024-12-07 02:02:18,693 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=69.8 pTM=0.461 ipTM=0.37 tol=3.71
2024-12-07 02:10:17,696 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=69.6 pTM=0.461 ipTM=0.364 tol=4.05
2024-12-07 02:18:16,894 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=69.3 pTM=0.46 ipTM=0.369 tol=3.73
2024-12-07 02:26:15,839 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=69.3 pTM=0.461 ipTM=0.372 tol=3.88
2024-12-07 02:34:15,052 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=69.4 pTM=0.459 ipTM=0.362 tol=2.89
2024-12-07 02:42:14,233 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=69.4 pTM=0.46 ipTM=0.349 tol=4.33
2024-12-07 02:50:13,391 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=69.3 pTM=0.461 ipTM=0.357 tol=4.78
2024-12-07 02:58:12,420 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=69.3 pTM=0.461 ipTM=0.364 tol=2.53
2024-12-07 03:06:11,559 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=69.6 pTM=0.46 ipTM=0.346 tol=4.14
2024-12-07 03:14:10,596 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=69.2 pTM=0.46 ipTM=0.362 tol=8.01
2024-12-07 03:22:09,761 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=69.5 pTM=0.46 ipTM=0.349 tol=5.99
2024-12-07 03:30:08,640 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=69.4 pTM=0.461 ipTM=0.344 tol=2.18
2024-12-07 03:38:07,722 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=69.3 pTM=0.459 ipTM=0.34 tol=2.39
2024-12-07 03:46:06,778 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=69.6 pTM=0.461 ipTM=0.344 tol=5.85
2024-12-07 03:54:05,821 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=69.7 pTM=0.46 ipTM=0.352 tol=6.03
2024-12-07 04:02:04,913 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=69.6 pTM=0.461 ipTM=0.351 tol=6.36
2024-12-07 04:10:03,935 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=69.5 pTM=0.459 ipTM=0.338 tol=5.56
2024-12-07 04:10:03,940 alphafold2_multimer_v3_model_4_seed_000 took 14852.1s (30 recycles)
2024-12-07 04:18:07,653 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=66.9 pTM=0.444 ipTM=0.269
2024-12-07 04:26:06,406 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=68 pTM=0.446 ipTM=0.325 tol=14.8
2024-12-07 04:34:05,243 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=66.5 pTM=0.447 ipTM=0.3 tol=19.8
2024-12-07 04:42:04,105 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=67.7 pTM=0.445 ipTM=0.297 tol=7.9
2024-12-07 04:50:02,663 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=68.4 pTM=0.446 ipTM=0.309 tol=5.95
2024-12-07 04:58:01,274 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=68.2 pTM=0.446 ipTM=0.306 tol=3.7
2024-12-07 05:06:00,055 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=68 pTM=0.442 ipTM=0.296 tol=3.97
2024-12-07 05:13:58,702 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=68.4 pTM=0.445 ipTM=0.299 tol=4.05
2024-12-07 05:21:57,472 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=68.6 pTM=0.444 ipTM=0.302 tol=5.41
2024-12-07 05:29:56,212 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=68.6 pTM=0.443 ipTM=0.304 tol=4.96
2024-12-07 05:37:54,863 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=68.6 pTM=0.443 ipTM=0.309 tol=2.55
2024-12-07 05:45:53,468 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=68.8 pTM=0.444 ipTM=0.303 tol=2.38
2024-12-07 05:53:52,103 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=68.6 pTM=0.443 ipTM=0.292 tol=3.01
2024-12-07 06:01:50,752 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=68.4 pTM=0.444 ipTM=0.287 tol=2.44
2024-12-07 06:09:49,235 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=68.6 pTM=0.443 ipTM=0.29 tol=3.73
2024-12-07 06:17:47,650 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=68.5 pTM=0.445 ipTM=0.284 tol=8.7
2024-12-07 06:25:46,171 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=68.4 pTM=0.444 ipTM=0.292 tol=2.97
2024-12-07 06:33:44,847 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=68.3 pTM=0.444 ipTM=0.288 tol=5.34
2024-12-07 06:41:43,382 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=68.4 pTM=0.443 ipTM=0.293 tol=4.83
2024-12-07 06:49:41,938 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=68.5 pTM=0.445 ipTM=0.279 tol=3.83
2024-12-07 06:57:40,524 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=68.1 pTM=0.443 ipTM=0.296 tol=2.83
2024-12-07 07:05:39,100 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=68.2 pTM=0.444 ipTM=0.299 tol=5.41
2024-12-07 07:13:37,732 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=68.2 pTM=0.443 ipTM=0.289 tol=5.88
2024-12-07 07:21:36,389 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=68.1 pTM=0.445 ipTM=0.296 tol=4.66
2024-12-07 07:29:35,011 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=68.4 pTM=0.446 ipTM=0.291 tol=3.16
2024-12-07 07:37:33,524 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=67.8 pTM=0.446 ipTM=0.281 tol=3.6
2024-12-07 07:45:32,069 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=68.3 pTM=0.445 ipTM=0.27 tol=3.9
2024-12-07 07:53:30,632 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=68.1 pTM=0.446 ipTM=0.272 tol=4.51
2024-12-07 08:01:29,210 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=68.2 pTM=0.447 ipTM=0.27 tol=4.44
2024-12-07 08:09:27,701 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=68.1 pTM=0.446 ipTM=0.279 tol=6.2
2024-12-07 08:17:26,241 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=68.2 pTM=0.448 ipTM=0.275 tol=4.22
2024-12-07 08:17:26,245 alphafold2_multimer_v3_model_5_seed_000 took 14837.6s (30 recycles)
2024-12-07 08:17:31,013 reranking models by 'multimer' metric
2024-12-07 08:17:35,248 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 08:39:54,217 Relaxation took 1343.2s
2024-12-07 08:39:54,217 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=71.9 pTM=0.46 ipTM=0.426
2024-12-07 08:49:28,474 Relaxation took 574.3s
2024-12-07 08:49:28,474 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=71.8 pTM=0.486 ipTM=0.416
2024-12-07 09:06:04,785 Relaxation took 996.3s
2024-12-07 09:06:04,785 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=70.9 pTM=0.465 ipTM=0.361
2024-12-07 09:27:02,830 Relaxation took 1258.0s
2024-12-07 09:27:02,831 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=69.5 pTM=0.459 ipTM=0.338
2024-12-07 09:45:32,395 Relaxation took 1109.6s
2024-12-07 09:45:32,395 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=68.2 pTM=0.448 ipTM=0.275
2024-12-07 09:45:42,474 Done