2024-12-06 11:34:48,674 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 11:34:48,995 Running on GPU
2024-12-06 11:34:52,548 Found 6 citations for tools or databases
2024-12-06 11:34:52,549 Query 1/1: HERC5_RPS6 (length 1273)
2024-12-06 11:34:52,831 Sleeping for 6s. Reason: PENDING
2024-12-06 11:34:59,094 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:35:05,358 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:35:10,613 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:35:19,875 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:35:29,138 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:35:36,392 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:35:41,797 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:35:50,058 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:35:55,312 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:36:05,582 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:36:15,847 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:36:23,108 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:36:30,365 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:36:40,623 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:36:50,885 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:36:56,140 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:37:03,402 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:37:08,654 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:37:17,917 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:37:23,175 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:37:28,436 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:37:38,702 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:37:48,963 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:37:57,224 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:38:06,479 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:38:12,733 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:38:25,144 Sleeping for 6s. Reason: PENDING
2024-12-06 11:38:31,409 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:38:40,675 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:38:49,951 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:38:59,222 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:39:04,477 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:39:10,740 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:39:18,999 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:39:26,252 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:39:35,523 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:39:42,777 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:39:49,036 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:39:58,299 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:40:05,555 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:40:13,816 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:40:23,078 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:40:39,513 Setting max_seq=508, max_extra_seq=2048
2024-12-06 11:44:08,873 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.9 pTM=0.706 ipTM=0.182
2024-12-06 11:44:49,961 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.9 pTM=0.712 ipTM=0.171 tol=3.26
2024-12-06 11:45:31,201 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79 pTM=0.708 ipTM=0.176 tol=3.91
2024-12-06 11:46:12,558 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.9 pTM=0.71 ipTM=0.179 tol=1.88
2024-12-06 11:46:53,932 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.6 pTM=0.706 ipTM=0.184 tol=2.04
2024-12-06 11:47:35,344 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.8 pTM=0.707 ipTM=0.183 tol=1.94
2024-12-06 11:48:16,745 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=78.8 pTM=0.703 ipTM=0.186 tol=2.36
2024-12-06 11:48:58,205 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.1 pTM=0.708 ipTM=0.182 tol=1.21
2024-12-06 11:49:39,699 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79 pTM=0.705 ipTM=0.183 tol=1.09
2024-12-06 11:50:21,200 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.1 pTM=0.706 ipTM=0.181 tol=1.1
2024-12-06 11:51:02,647 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=79 pTM=0.705 ipTM=0.184 tol=1.36
2024-12-06 11:51:44,091 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=79 pTM=0.709 ipTM=0.186 tol=1.03
2024-12-06 11:52:25,519 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=78.8 pTM=0.708 ipTM=0.188 tol=0.57
2024-12-06 11:53:06,952 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=78.9 pTM=0.705 ipTM=0.187 tol=0.91
2024-12-06 11:53:48,400 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=78.8 pTM=0.705 ipTM=0.187 tol=0.65
2024-12-06 11:54:29,872 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=78.8 pTM=0.707 ipTM=0.193 tol=1.11
2024-12-06 11:55:11,353 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=78.9 pTM=0.707 ipTM=0.198 tol=1.45
2024-12-06 11:55:52,834 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=78.8 pTM=0.708 ipTM=0.201 tol=0.665
2024-12-06 11:56:34,310 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=79 pTM=0.705 ipTM=0.196 tol=0.824
2024-12-06 11:57:15,767 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=78.8 pTM=0.706 ipTM=0.202 tol=0.569
2024-12-06 11:57:57,204 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=78.7 pTM=0.706 ipTM=0.198 tol=0.55
2024-12-06 11:58:38,637 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=78.8 pTM=0.71 ipTM=0.201 tol=0.982
2024-12-06 11:59:20,061 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=78.8 pTM=0.708 ipTM=0.198 tol=0.665
2024-12-06 12:00:01,492 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=78.9 pTM=0.709 ipTM=0.203 tol=0.7
2024-12-06 12:00:42,920 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=78.7 pTM=0.709 ipTM=0.202 tol=0.634
2024-12-06 12:01:24,352 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=78.9 pTM=0.707 ipTM=0.198 tol=0.711
2024-12-06 12:02:05,810 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=78.8 pTM=0.706 ipTM=0.199 tol=0.867
2024-12-06 12:02:47,212 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=78.8 pTM=0.707 ipTM=0.204 tol=1.01
2024-12-06 12:03:28,636 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=78.8 pTM=0.709 ipTM=0.201 tol=0.866
2024-12-06 12:04:10,024 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=78.8 pTM=0.707 ipTM=0.2 tol=0.732
2024-12-06 12:04:51,407 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=79 pTM=0.709 ipTM=0.201 tol=0.794
2024-12-06 12:04:51,408 alphafold2_multimer_v3_model_1_seed_000 took 1447.0s (30 recycles)
2024-12-06 12:05:33,774 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.7 pTM=0.71 ipTM=0.204
2024-12-06 12:06:15,272 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78.9 pTM=0.718 ipTM=0.178 tol=6.5
2024-12-06 12:06:56,780 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.1 pTM=0.717 ipTM=0.193 tol=2.42
2024-12-06 12:07:38,292 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.4 pTM=0.72 ipTM=0.193 tol=0.992
2024-12-06 12:08:19,792 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.3 pTM=0.716 ipTM=0.19 tol=1.58
2024-12-06 12:09:01,339 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79.6 pTM=0.719 ipTM=0.19 tol=1.46
2024-12-06 12:09:42,858 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=79.4 pTM=0.716 ipTM=0.191 tol=1.19
2024-12-06 12:10:24,444 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=79.6 pTM=0.721 ipTM=0.192 tol=1.01
2024-12-06 12:11:05,981 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=79.4 pTM=0.718 ipTM=0.191 tol=1.32
2024-12-06 12:11:47,538 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=79.5 pTM=0.718 ipTM=0.185 tol=0.671
2024-12-06 12:12:29,067 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=79.4 pTM=0.718 ipTM=0.19 tol=1.13
2024-12-06 12:13:10,605 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=79.4 pTM=0.718 ipTM=0.188 tol=0.884
2024-12-06 12:13:52,151 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=79.6 pTM=0.72 ipTM=0.19 tol=0.646
2024-12-06 12:14:33,703 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=79.5 pTM=0.716 ipTM=0.184 tol=1.05
2024-12-06 12:15:15,231 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=79.4 pTM=0.716 ipTM=0.189 tol=0.965
2024-12-06 12:15:56,791 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=79.2 pTM=0.717 ipTM=0.191 tol=2.1
2024-12-06 12:16:38,340 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=79.4 pTM=0.719 ipTM=0.197 tol=2.42
2024-12-06 12:17:19,849 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=79.5 pTM=0.718 ipTM=0.201 tol=2.52
2024-12-06 12:18:01,350 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=79.5 pTM=0.718 ipTM=0.205 tol=1.04
2024-12-06 12:18:42,789 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=79.5 pTM=0.718 ipTM=0.199 tol=0.856
2024-12-06 12:19:24,242 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=79.6 pTM=0.719 ipTM=0.201 tol=0.822
2024-12-06 12:20:05,712 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=79.6 pTM=0.719 ipTM=0.196 tol=0.746
2024-12-06 12:20:47,215 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=79.6 pTM=0.72 ipTM=0.2 tol=0.562
2024-12-06 12:21:28,728 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=79.7 pTM=0.72 ipTM=0.194 tol=0.476
2024-12-06 12:21:28,730 alphafold2_multimer_v3_model_2_seed_000 took 996.4s (23 recycles)
2024-12-06 12:22:11,065 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.6 pTM=0.704 ipTM=0.256
2024-12-06 12:22:52,553 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.1 pTM=0.713 ipTM=0.192 tol=3.87
2024-12-06 12:23:34,025 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.1 pTM=0.708 ipTM=0.187 tol=8.91
2024-12-06 12:24:15,520 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.6 pTM=0.716 ipTM=0.204 tol=8.36
2024-12-06 12:24:57,041 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.1 pTM=0.714 ipTM=0.204 tol=4.48
2024-12-06 12:25:38,538 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.9 pTM=0.72 ipTM=0.231 tol=6.11
2024-12-06 12:26:20,006 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.4 pTM=0.712 ipTM=0.212 tol=1.38
2024-12-06 12:27:01,500 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.8 pTM=0.719 ipTM=0.236 tol=4.21
2024-12-06 12:27:42,948 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.6 pTM=0.714 ipTM=0.213 tol=1.88
2024-12-06 12:28:24,389 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.5 pTM=0.718 ipTM=0.239 tol=2.99
2024-12-06 12:29:05,839 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.4 pTM=0.714 ipTM=0.215 tol=1.94
2024-12-06 12:29:47,306 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.5 pTM=0.722 ipTM=0.247 tol=2.28
2024-12-06 12:30:28,790 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=79.5 pTM=0.72 ipTM=0.224 tol=1.67
2024-12-06 12:31:10,227 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=79.9 pTM=0.726 ipTM=0.274 tol=2.23
2024-12-06 12:31:51,693 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=79.5 pTM=0.717 ipTM=0.233 tol=1.89
2024-12-06 12:32:33,167 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=79.3 pTM=0.713 ipTM=0.225 tol=2.15
2024-12-06 12:33:14,647 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=79.5 pTM=0.714 ipTM=0.212 tol=2.44
2024-12-06 12:33:56,057 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=79.7 pTM=0.726 ipTM=0.315 tol=3.18
2024-12-06 12:34:37,494 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=79.4 pTM=0.716 ipTM=0.231 tol=0.847
2024-12-06 12:35:18,888 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=79.4 pTM=0.714 ipTM=0.237 tol=1.52
2024-12-06 12:36:00,343 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=79.4 pTM=0.716 ipTM=0.234 tol=2.78
2024-12-06 12:36:41,778 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=79.5 pTM=0.719 ipTM=0.246 tol=1.85
2024-12-06 12:37:23,263 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=79.6 pTM=0.72 ipTM=0.259 tol=4.45
2024-12-06 12:38:04,691 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=79.7 pTM=0.72 ipTM=0.24 tol=4.28
2024-12-06 12:38:46,131 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=79.8 pTM=0.716 ipTM=0.228 tol=2.36
2024-12-06 12:39:27,567 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=79.3 pTM=0.715 ipTM=0.23 tol=2.06
2024-12-06 12:40:08,955 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=79.2 pTM=0.711 ipTM=0.212 tol=1.73
2024-12-06 12:40:50,315 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=79.5 pTM=0.72 ipTM=0.251 tol=1.25
2024-12-06 12:41:31,701 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=79.7 pTM=0.719 ipTM=0.237 tol=1.05
2024-12-06 12:42:13,033 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=79.5 pTM=0.717 ipTM=0.236 tol=1.22
2024-12-06 12:42:54,477 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=79.3 pTM=0.715 ipTM=0.219 tol=2.69
2024-12-06 12:42:54,478 alphafold2_multimer_v3_model_3_seed_000 took 1284.8s (30 recycles)
2024-12-06 12:43:36,833 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=76.8 pTM=0.722 ipTM=0.241
2024-12-06 12:44:18,343 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.8 pTM=0.738 ipTM=0.231 tol=6.41
2024-12-06 12:44:59,825 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.8 pTM=0.725 ipTM=0.202 tol=3.61
2024-12-06 12:45:41,292 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.2 pTM=0.725 ipTM=0.198 tol=1.8
2024-12-06 12:46:22,730 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.6 pTM=0.723 ipTM=0.208 tol=2.16
2024-12-06 12:47:04,199 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.8 pTM=0.722 ipTM=0.199 tol=2.19
2024-12-06 12:47:45,660 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.9 pTM=0.72 ipTM=0.201 tol=1.96
2024-12-06 12:48:27,143 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.8 pTM=0.722 ipTM=0.199 tol=1.71
2024-12-06 12:49:08,659 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.8 pTM=0.721 ipTM=0.2 tol=1.45
2024-12-06 12:49:50,116 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.6 pTM=0.72 ipTM=0.201 tol=1.06
2024-12-06 12:50:31,601 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.2 pTM=0.726 ipTM=0.221 tol=5.21
2024-12-06 12:51:13,081 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77.8 pTM=0.725 ipTM=0.219 tol=4.05
2024-12-06 12:51:54,598 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78 pTM=0.724 ipTM=0.214 tol=5.69
2024-12-06 12:52:36,060 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=77.8 pTM=0.723 ipTM=0.228 tol=6.75
2024-12-06 12:53:17,495 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.4 pTM=0.726 ipTM=0.246 tol=5.63
2024-12-06 12:53:58,933 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.4 pTM=0.723 ipTM=0.206 tol=2.91
2024-12-06 12:54:40,391 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=77.8 pTM=0.726 ipTM=0.226 tol=3.15
2024-12-06 12:55:21,835 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78 pTM=0.722 ipTM=0.206 tol=4.36
2024-12-06 12:56:03,262 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=77.8 pTM=0.724 ipTM=0.225 tol=3.09
2024-12-06 12:56:44,710 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=77.9 pTM=0.722 ipTM=0.211 tol=2.04
2024-12-06 12:57:26,180 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=77.6 pTM=0.724 ipTM=0.217 tol=0.989
2024-12-06 12:58:07,606 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=77.6 pTM=0.724 ipTM=0.217 tol=1.47
2024-12-06 12:58:49,065 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=77.8 pTM=0.725 ipTM=0.219 tol=1.59
2024-12-06 12:59:30,529 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=77.9 pTM=0.726 ipTM=0.214 tol=1.4
2024-12-06 13:00:11,985 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=77.7 pTM=0.722 ipTM=0.221 tol=1.04
2024-12-06 13:00:53,412 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=77.6 pTM=0.723 ipTM=0.224 tol=1.39
2024-12-06 13:01:34,830 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=77.8 pTM=0.721 ipTM=0.217 tol=2.05
2024-12-06 13:02:16,266 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=77.6 pTM=0.723 ipTM=0.219 tol=2.04
2024-12-06 13:02:57,756 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=78.1 pTM=0.724 ipTM=0.218 tol=2.23
2024-12-06 13:03:39,207 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=77.8 pTM=0.724 ipTM=0.22 tol=1.67
2024-12-06 13:04:20,658 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=78.1 pTM=0.723 ipTM=0.214 tol=2.28
2024-12-06 13:04:20,659 alphafold2_multimer_v3_model_4_seed_000 took 1285.2s (30 recycles)
2024-12-06 13:05:03,043 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.9 pTM=0.698 ipTM=0.196
2024-12-06 13:05:44,593 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.2 pTM=0.718 ipTM=0.208 tol=7.37
2024-12-06 13:06:26,114 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.3 pTM=0.71 ipTM=0.197 tol=2.17
2024-12-06 13:07:07,674 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.4 pTM=0.709 ipTM=0.182 tol=3.5
2024-12-06 13:07:49,167 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.1 pTM=0.712 ipTM=0.207 tol=5.11
2024-12-06 13:08:30,642 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.6 pTM=0.709 ipTM=0.185 tol=2.22
2024-12-06 13:09:12,139 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.2 pTM=0.707 ipTM=0.192 tol=1.91
2024-12-06 13:09:53,645 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.6 pTM=0.708 ipTM=0.181 tol=1.1
2024-12-06 13:10:35,127 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.7 pTM=0.708 ipTM=0.187 tol=1.23
2024-12-06 13:11:16,631 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.5 pTM=0.708 ipTM=0.185 tol=1.17
2024-12-06 13:11:58,155 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.4 pTM=0.707 ipTM=0.195 tol=1.12
2024-12-06 13:12:39,668 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.2 pTM=0.708 ipTM=0.187 tol=1.22
2024-12-06 13:13:21,190 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.6 pTM=0.71 ipTM=0.19 tol=1.24
2024-12-06 13:14:02,701 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.3 pTM=0.708 ipTM=0.191 tol=1.38
2024-12-06 13:14:44,188 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=78.4 pTM=0.707 ipTM=0.188 tol=1.56
2024-12-06 13:15:25,687 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.2 pTM=0.708 ipTM=0.192 tol=1.37
2024-12-06 13:16:07,220 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=78.4 pTM=0.708 ipTM=0.196 tol=0.448
2024-12-06 13:16:07,222 alphafold2_multimer_v3_model_5_seed_000 took 705.6s (16 recycles)
2024-12-06 13:16:08,188 reranking models by 'multimer' metric
2024-12-06 13:16:11,928 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 13:18:21,343 Relaxation took 133.2s
2024-12-06 13:18:21,343 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.3 pTM=0.715 ipTM=0.219
2024-12-06 13:20:39,630 Relaxation took 138.3s
2024-12-06 13:20:39,630 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.1 pTM=0.723 ipTM=0.214
2024-12-06 13:22:45,173 Relaxation took 125.5s
2024-12-06 13:22:45,173 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79 pTM=0.709 ipTM=0.201
2024-12-06 13:25:00,172 Relaxation took 135.0s
2024-12-06 13:25:00,172 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.7 pTM=0.72 ipTM=0.194
2024-12-06 13:27:09,618 Relaxation took 129.4s
2024-12-06 13:27:09,618 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.4 pTM=0.708 ipTM=0.196
2024-12-06 13:27:12,156 Done