2024-12-06 11:39:18,718 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 11:39:19,038 Running on GPU
2024-12-06 11:39:22,981 Found 6 citations for tools or databases
2024-12-06 11:39:22,981 Query 1/1: HERC5_SURF6 (length 1385)
2024-12-06 11:39:23,253 Sleeping for 6s. Reason: PENDING
2024-12-06 11:39:29,514 Sleeping for 9s. Reason: PENDING
2024-12-06 11:39:38,772 Sleeping for 6s. Reason: PENDING
2024-12-06 11:39:45,034 Sleeping for 9s. Reason: PENDING
2024-12-06 11:39:54,294 Sleeping for 8s. Reason: PENDING
2024-12-06 11:40:02,556 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:40:07,813 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:40:13,073 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:40:21,327 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:40:28,589 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:40:35,848 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:40:43,106 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:40:52,366 Sleeping for 6s. Reason: RUNNING
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2024-12-06 11:41:07,908 Sleeping for 5s. Reason: RUNNING
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2024-12-06 11:41:19,421 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:41:26,679 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:41:31,932 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:41:38,188 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:41:43,447 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:41:53,706 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:42:00,972 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:42:09,236 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:42:14,504 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:42:20,762 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:42:30,023 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:42:36,288 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:42:45,554 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:42:54,812 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:43:00,072 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:43:06,333 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:43:12,586 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:43:19,840 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:43:28,099 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:43:40,407 Sleeping for 9s. Reason: PENDING
2024-12-06 11:43:49,665 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:43:58,936 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:44:06,203 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:44:11,458 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:44:16,864 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:44:23,122 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:44:28,393 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:44:33,646 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:44:41,903 Sleeping for 5s. Reason: RUNNING
2024-12-06 11:44:47,155 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:44:53,421 Sleeping for 7s. Reason: RUNNING
2024-12-06 11:45:00,688 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:45:09,946 Sleeping for 8s. Reason: RUNNING
2024-12-06 11:45:18,206 Sleeping for 9s. Reason: RUNNING
2024-12-06 11:45:27,463 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:45:33,719 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:45:43,979 Sleeping for 6s. Reason: RUNNING
2024-12-06 11:45:50,235 Sleeping for 10s. Reason: RUNNING
2024-12-06 11:46:06,000 Setting max_seq=508, max_extra_seq=2048
2024-12-06 11:49:45,804 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.5 pTM=0.673 ipTM=0.252
2024-12-06 11:50:38,056 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=72.7 pTM=0.685 ipTM=0.253 tol=8.45
2024-12-06 11:51:30,534 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73 pTM=0.683 ipTM=0.247 tol=6.13
2024-12-06 11:52:23,052 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=72.8 pTM=0.674 ipTM=0.225 tol=4.27
2024-12-06 11:53:15,614 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=72.6 pTM=0.67 ipTM=0.23 tol=3.43
2024-12-06 11:54:08,230 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=72.8 pTM=0.674 ipTM=0.235 tol=2.39
2024-12-06 11:55:00,877 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=72.7 pTM=0.675 ipTM=0.256 tol=3.14
2024-12-06 11:55:53,494 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=72.7 pTM=0.673 ipTM=0.27 tol=3.64
2024-12-06 11:56:46,152 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=73 pTM=0.675 ipTM=0.248 tol=5.41
2024-12-06 11:57:38,802 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=73 pTM=0.678 ipTM=0.226 tol=3.01
2024-12-06 11:58:31,426 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=72.8 pTM=0.676 ipTM=0.24 tol=2.73
2024-12-06 11:59:24,044 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=72.9 pTM=0.675 ipTM=0.262 tol=2.8
2024-12-06 12:00:16,655 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=72.9 pTM=0.675 ipTM=0.25 tol=2.86
2024-12-06 12:01:09,280 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=73 pTM=0.675 ipTM=0.228 tol=3
2024-12-06 12:02:01,900 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=72.7 pTM=0.67 ipTM=0.234 tol=3.38
2024-12-06 12:02:54,488 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=72.7 pTM=0.672 ipTM=0.249 tol=3.77
2024-12-06 12:03:47,050 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=72.7 pTM=0.672 ipTM=0.243 tol=3.78
2024-12-06 12:04:39,632 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=72.9 pTM=0.676 ipTM=0.24 tol=2.8
2024-12-06 12:05:32,183 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=72.7 pTM=0.672 ipTM=0.24 tol=3.11
2024-12-06 12:06:24,712 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=72.6 pTM=0.671 ipTM=0.242 tol=2.81
2024-12-06 12:07:17,280 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=72.8 pTM=0.673 ipTM=0.246 tol=2.72
2024-12-06 12:08:09,832 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=72.8 pTM=0.672 ipTM=0.234 tol=3.12
2024-12-06 12:09:02,415 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=72.5 pTM=0.667 ipTM=0.228 tol=3.34
2024-12-06 12:09:55,046 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=72.9 pTM=0.673 ipTM=0.248 tol=2.6
2024-12-06 12:10:47,641 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=72.5 pTM=0.669 ipTM=0.258 tol=2.4
2024-12-06 12:11:40,291 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=72.8 pTM=0.673 ipTM=0.256 tol=2.21
2024-12-06 12:12:32,922 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=72.9 pTM=0.672 ipTM=0.266 tol=2.17
2024-12-06 12:13:25,539 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=72.6 pTM=0.671 ipTM=0.261 tol=2
2024-12-06 12:14:18,189 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=72.5 pTM=0.668 ipTM=0.241 tol=3.31
2024-12-06 12:15:10,857 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=72.4 pTM=0.669 ipTM=0.227 tol=4.96
2024-12-06 12:16:03,499 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=72.2 pTM=0.664 ipTM=0.223 tol=3.46
2024-12-06 12:16:03,500 alphafold2_multimer_v3_model_1_seed_000 took 1794.0s (30 recycles)
2024-12-06 12:16:57,432 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=71.5 pTM=0.666 ipTM=0.212
2024-12-06 12:17:50,208 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=72.6 pTM=0.678 ipTM=0.225 tol=8.65
2024-12-06 12:18:42,925 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=73.2 pTM=0.68 ipTM=0.218 tol=2.94
2024-12-06 12:19:35,619 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=73.1 pTM=0.677 ipTM=0.206 tol=2.19
2024-12-06 12:20:28,321 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=73 pTM=0.671 ipTM=0.197 tol=1.49
2024-12-06 12:21:21,077 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=73.2 pTM=0.676 ipTM=0.203 tol=0.876
2024-12-06 12:22:13,830 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.1 pTM=0.676 ipTM=0.215 tol=1.68
2024-12-06 12:23:06,560 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=72.9 pTM=0.674 ipTM=0.214 tol=1.27
2024-12-06 12:23:59,306 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=72.8 pTM=0.676 ipTM=0.217 tol=3.59
2024-12-06 12:24:52,080 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=72.8 pTM=0.68 ipTM=0.199 tol=9.06
2024-12-06 12:25:44,840 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=73.2 pTM=0.681 ipTM=0.201 tol=6.37
2024-12-06 12:26:37,626 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=73.1 pTM=0.677 ipTM=0.2 tol=2.11
2024-12-06 12:27:30,374 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=73.4 pTM=0.68 ipTM=0.201 tol=2.27
2024-12-06 12:28:23,104 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=73.1 pTM=0.677 ipTM=0.193 tol=2.37
2024-12-06 12:29:15,791 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=73.2 pTM=0.678 ipTM=0.198 tol=1.92
2024-12-06 12:30:08,509 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=73.3 pTM=0.679 ipTM=0.198 tol=1.95
2024-12-06 12:31:01,217 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=73.4 pTM=0.679 ipTM=0.196 tol=1.52
2024-12-06 12:31:53,936 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=73.4 pTM=0.68 ipTM=0.203 tol=1.21
2024-12-06 12:32:46,670 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=73.2 pTM=0.678 ipTM=0.2 tol=1.4
2024-12-06 12:33:39,400 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=73.3 pTM=0.677 ipTM=0.216 tol=0.953
2024-12-06 12:34:32,146 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=73.4 pTM=0.677 ipTM=0.215 tol=0.961
2024-12-06 12:35:24,881 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=73.4 pTM=0.677 ipTM=0.203 tol=1.5
2024-12-06 12:36:17,612 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=73.3 pTM=0.676 ipTM=0.208 tol=1.44
2024-12-06 12:37:10,327 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=73.4 pTM=0.679 ipTM=0.225 tol=1.52
2024-12-06 12:38:03,029 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=73.3 pTM=0.676 ipTM=0.216 tol=1.39
2024-12-06 12:38:55,742 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=73.3 pTM=0.679 ipTM=0.224 tol=3.08
2024-12-06 12:39:48,409 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=73.4 pTM=0.678 ipTM=0.227 tol=1.49
2024-12-06 12:40:41,031 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=73.5 pTM=0.678 ipTM=0.216 tol=2.87
2024-12-06 12:41:33,633 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=73.5 pTM=0.676 ipTM=0.215 tol=2.17
2024-12-06 12:42:26,233 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=73.4 pTM=0.678 ipTM=0.217 tol=2.58
2024-12-06 12:43:18,896 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=73.3 pTM=0.677 ipTM=0.209 tol=3.55
2024-12-06 12:43:18,897 alphafold2_multimer_v3_model_2_seed_000 took 1634.3s (30 recycles)
2024-12-06 12:44:12,827 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=70.4 pTM=0.664 ipTM=0.184
2024-12-06 12:45:05,627 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=71.7 pTM=0.68 ipTM=0.209 tol=18.5
2024-12-06 12:45:58,418 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=71.8 pTM=0.678 ipTM=0.199 tol=7.27
2024-12-06 12:46:51,183 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=71.8 pTM=0.672 ipTM=0.201 tol=7
2024-12-06 12:47:43,935 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=71.8 pTM=0.668 ipTM=0.193 tol=3.82
2024-12-06 12:48:36,723 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.2 pTM=0.673 ipTM=0.203 tol=2.7
2024-12-06 12:49:29,529 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72.2 pTM=0.672 ipTM=0.197 tol=4.03
2024-12-06 12:50:22,293 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=72.2 pTM=0.67 ipTM=0.202 tol=4.23
2024-12-06 12:51:15,070 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=72.2 pTM=0.672 ipTM=0.225 tol=4.93
2024-12-06 12:52:07,826 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=72.4 pTM=0.674 ipTM=0.239 tol=2.35
2024-12-06 12:53:00,600 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=72.1 pTM=0.67 ipTM=0.213 tol=4.35
2024-12-06 12:53:53,319 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=72.2 pTM=0.67 ipTM=0.218 tol=4.05
2024-12-06 12:54:46,058 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=72.3 pTM=0.672 ipTM=0.206 tol=2.96
2024-12-06 12:55:38,827 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=72.6 pTM=0.675 ipTM=0.21 tol=3.25
2024-12-06 12:56:31,591 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=72.3 pTM=0.671 ipTM=0.209 tol=3.52
2024-12-06 12:57:24,353 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=72.1 pTM=0.669 ipTM=0.232 tol=2.69
2024-12-06 12:58:17,141 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=72.3 pTM=0.671 ipTM=0.208 tol=3.82
2024-12-06 12:59:09,900 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=72.4 pTM=0.67 ipTM=0.207 tol=4.32
2024-12-06 13:00:02,652 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=72.1 pTM=0.668 ipTM=0.203 tol=3.29
2024-12-06 13:00:55,381 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=72.2 pTM=0.668 ipTM=0.221 tol=2.64
2024-12-06 13:01:48,139 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=72.2 pTM=0.67 ipTM=0.216 tol=2.52
2024-12-06 13:02:40,910 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=72.3 pTM=0.669 ipTM=0.201 tol=3.02
2024-12-06 13:03:33,672 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=71.8 pTM=0.663 ipTM=0.199 tol=7.44
2024-12-06 13:04:26,410 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=72.4 pTM=0.669 ipTM=0.246 tol=3.42
2024-12-06 13:05:19,176 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=72.1 pTM=0.669 ipTM=0.236 tol=1.83
2024-12-06 13:06:11,942 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=72.4 pTM=0.67 ipTM=0.224 tol=2.45
2024-12-06 13:07:04,725 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=72.2 pTM=0.668 ipTM=0.213 tol=2.24
2024-12-06 13:07:57,470 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=72.3 pTM=0.668 ipTM=0.23 tol=1.78
2024-12-06 13:08:50,216 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=72 pTM=0.667 ipTM=0.241 tol=1.76
2024-12-06 13:09:42,968 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=72.4 pTM=0.669 ipTM=0.232 tol=2.68
2024-12-06 13:10:35,734 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=72.1 pTM=0.669 ipTM=0.239 tol=1.79
2024-12-06 13:10:35,735 alphafold2_multimer_v3_model_3_seed_000 took 1635.7s (30 recycles)
2024-12-06 13:11:29,608 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=70.2 pTM=0.679 ipTM=0.21
2024-12-06 13:12:22,393 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.2 pTM=0.687 ipTM=0.259 tol=12.2
2024-12-06 13:13:15,172 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.7 pTM=0.685 ipTM=0.238 tol=9.33
2024-12-06 13:14:07,905 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=71.6 pTM=0.679 ipTM=0.241 tol=4.19
2024-12-06 13:15:00,616 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=71.4 pTM=0.676 ipTM=0.211 tol=3.65
2024-12-06 13:15:53,352 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.5 pTM=0.678 ipTM=0.221 tol=3.21
2024-12-06 13:16:46,082 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.6 pTM=0.679 ipTM=0.214 tol=3.91
2024-12-06 13:17:38,784 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=71.4 pTM=0.677 ipTM=0.215 tol=1.66
2024-12-06 13:18:31,488 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=71.6 pTM=0.677 ipTM=0.206 tol=2.27
2024-12-06 13:19:24,207 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=71.4 pTM=0.677 ipTM=0.218 tol=2.1
2024-12-06 13:20:16,939 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=71.4 pTM=0.676 ipTM=0.21 tol=1.92
2024-12-06 13:21:09,654 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=71.5 pTM=0.677 ipTM=0.22 tol=1.99
2024-12-06 13:22:02,366 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=71.6 pTM=0.679 ipTM=0.21 tol=1.74
2024-12-06 13:22:55,094 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=71.6 pTM=0.679 ipTM=0.219 tol=1.61
2024-12-06 13:23:47,755 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=71.3 pTM=0.674 ipTM=0.205 tol=7.56
2024-12-06 13:24:40,427 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=71.2 pTM=0.674 ipTM=0.22 tol=5.79
2024-12-06 13:25:33,147 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=71.6 pTM=0.677 ipTM=0.213 tol=1.57
2024-12-06 13:26:25,886 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=71.6 pTM=0.678 ipTM=0.226 tol=1.57
2024-12-06 13:27:18,593 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=71.4 pTM=0.675 ipTM=0.216 tol=1.24
2024-12-06 13:28:11,277 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=71.5 pTM=0.676 ipTM=0.232 tol=2.34
2024-12-06 13:29:03,968 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=71.5 pTM=0.675 ipTM=0.223 tol=1.78
2024-12-06 13:29:56,665 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=71.4 pTM=0.673 ipTM=0.226 tol=2.96
2024-12-06 13:30:49,379 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=71.5 pTM=0.675 ipTM=0.228 tol=1.88
2024-12-06 13:31:42,087 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=71.6 pTM=0.676 ipTM=0.257 tol=2.33
2024-12-06 13:32:34,784 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=71.4 pTM=0.675 ipTM=0.242 tol=1.41
2024-12-06 13:33:27,508 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=71.4 pTM=0.675 ipTM=0.231 tol=2.24
2024-12-06 13:34:20,268 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=71.8 pTM=0.677 ipTM=0.233 tol=3.5
2024-12-06 13:35:13,037 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=71.6 pTM=0.676 ipTM=0.237 tol=2.42
2024-12-06 13:36:05,753 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=71.6 pTM=0.674 ipTM=0.223 tol=1.75
2024-12-06 13:36:58,433 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=71.8 pTM=0.678 ipTM=0.23 tol=2.27
2024-12-06 13:37:51,100 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=71.6 pTM=0.675 ipTM=0.223 tol=2
2024-12-06 13:37:51,101 alphafold2_multimer_v3_model_4_seed_000 took 1634.2s (30 recycles)
2024-12-06 13:38:45,083 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.7 pTM=0.662 ipTM=0.215
2024-12-06 13:39:37,827 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=70.7 pTM=0.673 ipTM=0.301 tol=8.06
2024-12-06 13:40:30,599 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=71.2 pTM=0.674 ipTM=0.247 tol=6.93
2024-12-06 13:41:23,363 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=71.4 pTM=0.673 ipTM=0.281 tol=2.8
2024-12-06 13:42:16,059 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=71.6 pTM=0.67 ipTM=0.248 tol=3.91
2024-12-06 13:43:08,754 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=71.6 pTM=0.673 ipTM=0.238 tol=3.14
2024-12-06 13:44:01,426 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=71.7 pTM=0.674 ipTM=0.259 tol=4.51
2024-12-06 13:44:54,079 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=71.6 pTM=0.672 ipTM=0.267 tol=3.09
2024-12-06 13:45:46,780 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=71.8 pTM=0.674 ipTM=0.263 tol=2.76
2024-12-06 13:46:39,513 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=71.6 pTM=0.672 ipTM=0.257 tol=2.8
2024-12-06 13:47:32,296 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=71.7 pTM=0.672 ipTM=0.258 tol=2.91
2024-12-06 13:48:25,051 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=71.6 pTM=0.672 ipTM=0.275 tol=3.89
2024-12-06 13:49:17,798 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.8 pTM=0.674 ipTM=0.255 tol=3.4
2024-12-06 13:50:10,569 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=71.6 pTM=0.674 ipTM=0.223 tol=3.59
2024-12-06 13:51:03,307 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.6 pTM=0.672 ipTM=0.266 tol=3.59
2024-12-06 13:51:56,043 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71.2 pTM=0.67 ipTM=0.245 tol=5.64
2024-12-06 13:52:48,779 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=71.6 pTM=0.67 ipTM=0.231 tol=3.11
2024-12-06 13:53:41,520 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=71.6 pTM=0.671 ipTM=0.226 tol=3.1
2024-12-06 13:54:34,256 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=71.6 pTM=0.67 ipTM=0.267 tol=1.56
2024-12-06 13:55:26,978 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=71.8 pTM=0.67 ipTM=0.247 tol=2.29
2024-12-06 13:56:19,742 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=71.9 pTM=0.67 ipTM=0.212 tol=2.34
2024-12-06 13:57:12,506 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=71.8 pTM=0.669 ipTM=0.264 tol=1.63
2024-12-06 13:58:05,277 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=72 pTM=0.67 ipTM=0.271 tol=1.41
2024-12-06 13:58:58,031 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=72.1 pTM=0.671 ipTM=0.25 tol=3.42
2024-12-06 13:59:50,768 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=72 pTM=0.67 ipTM=0.273 tol=3.72
2024-12-06 14:00:43,440 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=72 pTM=0.671 ipTM=0.264 tol=1.83
2024-12-06 14:01:36,095 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=72.1 pTM=0.67 ipTM=0.282 tol=3.58
2024-12-06 14:02:28,703 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=72 pTM=0.669 ipTM=0.275 tol=4.34
2024-12-06 14:03:21,350 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=72.1 pTM=0.669 ipTM=0.262 tol=1.52
2024-12-06 14:04:14,002 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=72 pTM=0.671 ipTM=0.267 tol=0.937
2024-12-06 14:05:06,628 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=72.1 pTM=0.671 ipTM=0.257 tol=1.83
2024-12-06 14:05:06,629 alphafold2_multimer_v3_model_5_seed_000 took 1634.2s (30 recycles)
2024-12-06 14:05:07,773 reranking models by 'multimer' metric
2024-12-06 14:05:12,095 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 14:07:33,528 Relaxation took 145.8s
2024-12-06 14:07:33,528 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.1 pTM=0.671 ipTM=0.257
2024-12-06 14:09:39,714 Relaxation took 126.2s
2024-12-06 14:09:39,714 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.1 pTM=0.669 ipTM=0.239
2024-12-06 14:12:27,141 Relaxation took 167.4s
2024-12-06 14:12:27,141 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=71.6 pTM=0.675 ipTM=0.223
2024-12-06 14:24:00,406 Relaxation took 693.3s
2024-12-06 14:24:00,406 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=72.2 pTM=0.664 ipTM=0.223
2024-12-06 14:27:23,681 Relaxation took 203.3s
2024-12-06 14:27:23,681 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=73.3 pTM=0.677 ipTM=0.209
2024-12-06 14:27:26,605 Done