2024-12-06 12:00:21,040 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 12:00:22,618 Running on GPU
2024-12-06 12:00:27,001 Found 6 citations for tools or databases
2024-12-06 12:00:27,001 Query 1/1: HERC6_UBE2L6 (length 1175)
2024-12-06 12:00:27,284 Sleeping for 8s. Reason: PENDING
2024-12-06 12:00:35,563 Sleeping for 5s. Reason: PENDING
2024-12-06 12:00:40,820 Sleeping for 9s. Reason: RUNNING
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2024-12-06 12:04:08,692 Sleeping for 7s. Reason: PENDING
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2024-12-06 12:05:03,518 Sleeping for 10s. Reason: RUNNING
2024-12-06 12:05:13,781 Sleeping for 7s. Reason: RUNNING
2024-12-06 12:05:21,038 Sleeping for 8s. Reason: RUNNING
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2024-12-06 12:06:33,386 Sleeping for 8s. Reason: RUNNING
2024-12-06 12:06:54,430 Setting max_seq=508, max_extra_seq=2048
2024-12-06 12:11:29,214 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=87.9 pTM=0.833 ipTM=0.873
2024-12-06 12:12:05,756 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=88.4 pTM=0.844 ipTM=0.88 tol=0.792
2024-12-06 12:12:42,389 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=88.2 pTM=0.838 ipTM=0.874 tol=0.385
2024-12-06 12:12:42,390 alphafold2_multimer_v3_model_1_seed_000 took 327.0s (2 recycles)
2024-12-06 12:13:20,343 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=86.9 pTM=0.811 ipTM=0.832
2024-12-06 12:13:57,193 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=87 pTM=0.812 ipTM=0.837 tol=0.702
2024-12-06 12:14:34,035 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=87.3 pTM=0.817 ipTM=0.84 tol=0.519
2024-12-06 12:15:10,826 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=87.7 pTM=0.821 ipTM=0.815 tol=0.315
2024-12-06 12:15:10,827 alphafold2_multimer_v3_model_2_seed_000 took 147.2s (3 recycles)
2024-12-06 12:15:48,812 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.4 pTM=0.821 ipTM=0.882
2024-12-06 12:16:25,665 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=88.2 pTM=0.841 ipTM=0.879 tol=0.635
2024-12-06 12:17:02,478 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=88.2 pTM=0.837 ipTM=0.877 tol=0.396
2024-12-06 12:17:02,479 alphafold2_multimer_v3_model_3_seed_000 took 110.5s (2 recycles)
2024-12-06 12:17:40,442 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=86.6 pTM=0.812 ipTM=0.89
2024-12-06 12:18:17,283 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=87.4 pTM=0.831 ipTM=0.894 tol=0.704
2024-12-06 12:18:54,098 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=87.3 pTM=0.827 ipTM=0.885 tol=0.472
2024-12-06 12:18:54,099 alphafold2_multimer_v3_model_4_seed_000 took 110.4s (2 recycles)
2024-12-06 12:19:32,067 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=86.6 pTM=0.82 ipTM=0.833
2024-12-06 12:20:08,934 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=87.1 pTM=0.833 ipTM=0.86 tol=0.708
2024-12-06 12:20:45,778 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=87.2 pTM=0.828 ipTM=0.861 tol=0.362
2024-12-06 12:20:45,780 alphafold2_multimer_v3_model_5_seed_000 took 110.5s (2 recycles)
2024-12-06 12:20:46,980 reranking models by 'multimer' metric
2024-12-06 12:20:51,536 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 12:22:01,635 Relaxation took 74.7s
2024-12-06 12:22:01,636 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=87.3 pTM=0.827 ipTM=0.885
2024-12-06 12:23:02,370 Relaxation took 60.7s
2024-12-06 12:23:02,370 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=88.2 pTM=0.837 ipTM=0.877
2024-12-06 12:24:03,331 Relaxation took 61.0s
2024-12-06 12:24:03,331 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=88.2 pTM=0.838 ipTM=0.874
2024-12-06 12:24:57,670 Relaxation took 54.3s
2024-12-06 12:24:57,670 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=87.2 pTM=0.828 ipTM=0.861
2024-12-06 12:26:31,952 Relaxation took 94.3s
2024-12-06 12:26:31,952 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87.7 pTM=0.821 ipTM=0.815
2024-12-06 12:26:34,967 Done