2024-12-06 12:01:22,673 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 12:01:23,027 Running on GPU
2024-12-06 12:01:26,556 Found 6 citations for tools or databases
2024-12-06 12:01:26,556 Query 1/1: IPP_DNAL4 (length 689)
2024-12-06 12:01:26,842 Sleeping for 9s. Reason: PENDING
2024-12-06 12:01:36,106 Sleeping for 10s. Reason: RUNNING
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2024-12-06 12:03:35,038 Sleeping for 9s. Reason: RUNNING
2024-12-06 12:03:46,023 Sleeping for 6s. Reason: PENDING
2024-12-06 12:03:52,281 Sleeping for 8s. Reason: PENDING
2024-12-06 12:04:00,535 Sleeping for 6s. Reason: RUNNING
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2024-12-06 12:04:22,326 Sleeping for 10s. Reason: RUNNING
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2024-12-06 12:04:41,851 Sleeping for 10s. Reason: RUNNING
2024-12-06 12:04:52,123 Sleeping for 8s. Reason: RUNNING
2024-12-06 12:05:00,383 Sleeping for 9s. Reason: RUNNING
2024-12-06 12:05:09,674 Sleeping for 7s. Reason: RUNNING
2024-12-06 12:05:16,943 Sleeping for 9s. Reason: RUNNING
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2024-12-06 12:05:33,455 Sleeping for 9s. Reason: RUNNING
2024-12-06 12:05:45,934 Setting max_seq=508, max_extra_seq=2048
2024-12-06 12:08:40,320 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=82.4 pTM=0.58 ipTM=0.125
2024-12-06 12:08:49,754 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.9 pTM=0.549 ipTM=0.195 tol=5.25
2024-12-06 12:08:59,208 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.2 pTM=0.557 ipTM=0.281 tol=2.08
2024-12-06 12:09:08,698 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.1 pTM=0.565 ipTM=0.28 tol=0.76
2024-12-06 12:09:18,213 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=81.4 pTM=0.562 ipTM=0.285 tol=0.67
2024-12-06 12:09:27,727 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.3 pTM=0.564 ipTM=0.299 tol=0.668
2024-12-06 12:09:37,261 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=81.4 pTM=0.559 ipTM=0.307 tol=0.562
2024-12-06 12:09:46,805 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=82.2 pTM=0.567 ipTM=0.311 tol=0.367
2024-12-06 12:09:46,805 alphafold2_multimer_v3_model_1_seed_000 took 236.0s (7 recycles)
2024-12-06 12:09:56,698 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=81.1 pTM=0.571 ipTM=0.188
2024-12-06 12:10:06,256 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.8 pTM=0.565 ipTM=0.245 tol=3.35
2024-12-06 12:10:15,833 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.6 pTM=0.564 ipTM=0.273 tol=1.53
2024-12-06 12:10:25,411 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.1 pTM=0.558 ipTM=0.277 tol=0.825
2024-12-06 12:10:35,007 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=82.8 pTM=0.584 ipTM=0.303 tol=1.25
2024-12-06 12:10:44,605 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=82.7 pTM=0.582 ipTM=0.303 tol=1.59
2024-12-06 12:10:54,197 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=82.8 pTM=0.58 ipTM=0.292 tol=0.895
2024-12-06 12:11:03,793 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=83.1 pTM=0.581 ipTM=0.295 tol=0.751
2024-12-06 12:11:13,418 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=83.4 pTM=0.586 ipTM=0.294 tol=0.836
2024-12-06 12:11:23,025 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=83.6 pTM=0.59 ipTM=0.296 tol=0.997
2024-12-06 12:11:32,649 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=83.7 pTM=0.589 ipTM=0.303 tol=0.484
2024-12-06 12:11:32,649 alphafold2_multimer_v3_model_2_seed_000 took 105.5s (10 recycles)
2024-12-06 12:11:42,606 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=83.4 pTM=0.603 ipTM=0.146
2024-12-06 12:11:52,232 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=82.6 pTM=0.605 ipTM=0.295 tol=3.99
2024-12-06 12:12:01,911 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=83.5 pTM=0.608 ipTM=0.317 tol=1.39
2024-12-06 12:12:11,579 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=83.4 pTM=0.6 ipTM=0.309 tol=2.52
2024-12-06 12:12:21,240 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=83.6 pTM=0.601 ipTM=0.315 tol=0.994
2024-12-06 12:12:30,905 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=83.5 pTM=0.594 ipTM=0.309 tol=0.981
2024-12-06 12:12:40,571 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=83.2 pTM=0.592 ipTM=0.322 tol=0.927
2024-12-06 12:12:50,228 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=83.4 pTM=0.584 ipTM=0.304 tol=1.4
2024-12-06 12:12:59,886 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=83.6 pTM=0.589 ipTM=0.312 tol=0.908
2024-12-06 12:13:09,547 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=83.5 pTM=0.587 ipTM=0.3 tol=0.58
2024-12-06 12:13:19,192 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=83.5 pTM=0.586 ipTM=0.314 tol=0.535
2024-12-06 12:13:28,868 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=83.8 pTM=0.593 ipTM=0.304 tol=0.542
2024-12-06 12:13:38,541 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=83.9 pTM=0.598 ipTM=0.32 tol=0.51
2024-12-06 12:13:48,206 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=83.5 pTM=0.589 ipTM=0.309 tol=0.54
2024-12-06 12:13:57,868 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=83.5 pTM=0.587 ipTM=0.313 tol=0.434
2024-12-06 12:13:57,868 alphafold2_multimer_v3_model_3_seed_000 took 144.9s (14 recycles)
2024-12-06 12:14:07,841 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=81.1 pTM=0.574 ipTM=0.335
2024-12-06 12:14:17,477 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.4 pTM=0.6 ipTM=0.357 tol=5.7
2024-12-06 12:14:27,136 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.5 pTM=0.586 ipTM=0.296 tol=3.21
2024-12-06 12:14:36,786 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=82.6 pTM=0.583 ipTM=0.294 tol=1.58
2024-12-06 12:14:46,443 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.8 pTM=0.584 ipTM=0.298 tol=0.928
2024-12-06 12:14:56,095 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=82.6 pTM=0.589 ipTM=0.306 tol=0.885
2024-12-06 12:15:05,745 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=82.8 pTM=0.583 ipTM=0.303 tol=1.14
2024-12-06 12:15:15,376 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=82.3 pTM=0.583 ipTM=0.312 tol=3.45
2024-12-06 12:15:25,035 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.1 pTM=0.585 ipTM=0.318 tol=1.21
2024-12-06 12:15:34,669 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=82.9 pTM=0.588 ipTM=0.302 tol=1.53
2024-12-06 12:15:44,314 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.1 pTM=0.588 ipTM=0.3 tol=2.33
2024-12-06 12:15:53,953 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=82.8 pTM=0.591 ipTM=0.306 tol=1.24
2024-12-06 12:16:03,625 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=83.2 pTM=0.593 ipTM=0.307 tol=1.83
2024-12-06 12:16:13,258 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=83.1 pTM=0.591 ipTM=0.301 tol=0.8
2024-12-06 12:16:22,913 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=83.3 pTM=0.589 ipTM=0.297 tol=0.591
2024-12-06 12:16:32,577 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=83.6 pTM=0.597 ipTM=0.297 tol=1.16
2024-12-06 12:16:42,229 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=83.6 pTM=0.589 ipTM=0.302 tol=1.11
2024-12-06 12:16:51,883 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=83.7 pTM=0.59 ipTM=0.302 tol=0.653
2024-12-06 12:17:01,556 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=83.9 pTM=0.596 ipTM=0.296 tol=0.818
2024-12-06 12:17:11,195 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=83.2 pTM=0.582 ipTM=0.295 tol=0.955
2024-12-06 12:17:20,853 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=83.4 pTM=0.59 ipTM=0.296 tol=0.937
2024-12-06 12:17:30,515 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=83.6 pTM=0.586 ipTM=0.302 tol=0.779
2024-12-06 12:17:40,171 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=83.7 pTM=0.592 ipTM=0.306 tol=0.881
2024-12-06 12:17:49,812 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=83.2 pTM=0.581 ipTM=0.307 tol=0.587
2024-12-06 12:17:59,452 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=83.5 pTM=0.59 ipTM=0.306 tol=0.761
2024-12-06 12:18:09,111 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=83.8 pTM=0.586 ipTM=0.302 tol=0.878
2024-12-06 12:18:18,777 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=83.6 pTM=0.596 ipTM=0.298 tol=0.752
2024-12-06 12:18:28,433 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=83.6 pTM=0.588 ipTM=0.292 tol=0.998
2024-12-06 12:18:38,095 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=83.5 pTM=0.587 ipTM=0.296 tol=0.624
2024-12-06 12:18:47,740 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=83.2 pTM=0.581 ipTM=0.296 tol=0.63
2024-12-06 12:18:57,370 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=83.3 pTM=0.586 ipTM=0.298 tol=0.797
2024-12-06 12:18:57,370 alphafold2_multimer_v3_model_4_seed_000 took 299.2s (30 recycles)
2024-12-06 12:19:07,322 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.8 pTM=0.585 ipTM=0.173
2024-12-06 12:19:16,985 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.8 pTM=0.581 ipTM=0.233 tol=2.57
2024-12-06 12:19:26,662 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=82 pTM=0.581 ipTM=0.249 tol=2.33
2024-12-06 12:19:36,338 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.1 pTM=0.583 ipTM=0.276 tol=1.2
2024-12-06 12:19:46,006 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.2 pTM=0.582 ipTM=0.293 tol=2.59
2024-12-06 12:19:55,683 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82.2 pTM=0.583 ipTM=0.328 tol=0.903
2024-12-06 12:20:05,350 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=82.4 pTM=0.58 ipTM=0.319 tol=0.683
2024-12-06 12:20:15,024 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=82.3 pTM=0.579 ipTM=0.299 tol=0.92
2024-12-06 12:20:24,703 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=82.5 pTM=0.579 ipTM=0.302 tol=0.533
2024-12-06 12:20:34,356 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=82.4 pTM=0.58 ipTM=0.303 tol=0.38
2024-12-06 12:20:34,356 alphafold2_multimer_v3_model_5_seed_000 took 96.7s (9 recycles)
2024-12-06 12:20:34,661 reranking models by 'multimer' metric
2024-12-06 12:20:38,070 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 12:21:00,055 Relaxation took 25.4s
2024-12-06 12:21:00,055 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=83.5 pTM=0.587 ipTM=0.313
2024-12-06 12:21:30,682 Relaxation took 30.6s
2024-12-06 12:21:30,682 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.2 pTM=0.567 ipTM=0.311
2024-12-06 12:22:22,760 Relaxation took 52.1s
2024-12-06 12:22:22,760 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=83.7 pTM=0.589 ipTM=0.303
2024-12-06 12:22:40,733 Relaxation took 18.0s
2024-12-06 12:22:40,733 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=82.4 pTM=0.58 ipTM=0.303
2024-12-06 12:22:57,558 Relaxation took 16.8s
2024-12-06 12:22:57,558 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.3 pTM=0.586 ipTM=0.298
2024-12-06 12:22:58,852 Done