2024-12-06 18:56:53,267 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 18:56:53,587 Running on GPU
2024-12-06 18:56:57,659 Found 6 citations for tools or databases
2024-12-06 18:56:57,659 Query 1/1: KCTD6_IFIT5 (length 719)
2024-12-06 18:56:57,971 Sleeping for 6s. Reason: PENDING
2024-12-06 18:57:04,232 Sleeping for 6s. Reason: RUNNING
2024-12-06 18:57:10,497 Sleeping for 10s. Reason: RUNNING
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2024-12-06 18:57:50,802 Sleeping for 10s. Reason: RUNNING
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2024-12-06 18:58:11,330 Sleeping for 9s. Reason: RUNNING
2024-12-06 18:58:20,611 Sleeping for 10s. Reason: RUNNING
2024-12-06 18:58:30,895 Sleeping for 6s. Reason: RUNNING
2024-12-06 18:58:37,173 Sleeping for 9s. Reason: RUNNING
2024-12-06 18:58:46,434 Sleeping for 9s. Reason: RUNNING
2024-12-06 18:58:57,215 Sleeping for 7s. Reason: PENDING
2024-12-06 18:59:04,475 Sleeping for 7s. Reason: RUNNING
2024-12-06 18:59:11,730 Sleeping for 10s. Reason: RUNNING
2024-12-06 18:59:21,999 Sleeping for 5s. Reason: RUNNING
2024-12-06 18:59:27,253 Sleeping for 10s. Reason: RUNNING
2024-12-06 18:59:37,506 Sleeping for 10s. Reason: RUNNING
2024-12-06 18:59:47,768 Sleeping for 10s. Reason: RUNNING
2024-12-06 18:59:58,040 Sleeping for 8s. Reason: RUNNING
2024-12-06 19:00:06,299 Sleeping for 8s. Reason: RUNNING
2024-12-06 19:00:14,566 Sleeping for 8s. Reason: RUNNING
2024-12-06 19:00:24,799 Setting max_seq=508, max_extra_seq=2048
2024-12-06 19:03:13,494 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.9 pTM=0.663 ipTM=0.155
2024-12-06 19:03:23,878 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.9 pTM=0.682 ipTM=0.21 tol=12.1
2024-12-06 19:03:34,280 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.5 pTM=0.714 ipTM=0.312 tol=2.62
2024-12-06 19:03:44,681 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.8 pTM=0.728 ipTM=0.352 tol=1.92
2024-12-06 19:03:55,111 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=82.6 pTM=0.743 ipTM=0.393 tol=0.705
2024-12-06 19:04:05,518 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.7 pTM=0.745 ipTM=0.409 tol=0.822
2024-12-06 19:04:15,958 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=82.7 pTM=0.745 ipTM=0.399 tol=0.368
2024-12-06 19:04:15,958 alphafold2_multimer_v3_model_1_seed_000 took 225.8s (6 recycles)
2024-12-06 19:04:26,758 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.9 pTM=0.661 ipTM=0.207
2024-12-06 19:04:37,186 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.2 pTM=0.679 ipTM=0.327 tol=4.34
2024-12-06 19:04:47,620 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.5 pTM=0.673 ipTM=0.333 tol=2.17
2024-12-06 19:04:58,050 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.4 pTM=0.672 ipTM=0.335 tol=2.85
2024-12-06 19:05:08,516 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81 pTM=0.67 ipTM=0.279 tol=3.66
2024-12-06 19:05:18,960 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79.6 pTM=0.655 ipTM=0.224 tol=2.76
2024-12-06 19:05:29,392 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.8 pTM=0.648 ipTM=0.182 tol=2.64
2024-12-06 19:05:39,835 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.1 pTM=0.646 ipTM=0.161 tol=3.82
2024-12-06 19:05:50,294 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.4 pTM=0.646 ipTM=0.151 tol=2.65
2024-12-06 19:06:00,742 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.7 pTM=0.646 ipTM=0.156 tol=1.58
2024-12-06 19:06:11,197 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=79.1 pTM=0.646 ipTM=0.16 tol=1.9
2024-12-06 19:06:21,664 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=79.4 pTM=0.647 ipTM=0.162 tol=1.56
2024-12-06 19:06:32,094 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=79.2 pTM=0.644 ipTM=0.16 tol=1.75
2024-12-06 19:06:42,535 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=79.7 pTM=0.644 ipTM=0.163 tol=1.19
2024-12-06 19:06:52,997 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=80.1 pTM=0.652 ipTM=0.165 tol=0.859
2024-12-06 19:07:03,454 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=80.1 pTM=0.649 ipTM=0.166 tol=0.927
2024-12-06 19:07:13,942 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=80.5 pTM=0.658 ipTM=0.172 tol=1.51
2024-12-06 19:07:24,418 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=80.7 pTM=0.667 ipTM=0.203 tol=2.25
2024-12-06 19:07:34,881 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=81 pTM=0.673 ipTM=0.221 tol=1.23
2024-12-06 19:07:45,348 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=81.4 pTM=0.671 ipTM=0.213 tol=0.699
2024-12-06 19:07:55,803 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=81.6 pTM=0.685 ipTM=0.258 tol=1.25
2024-12-06 19:08:06,252 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=81.6 pTM=0.686 ipTM=0.268 tol=0.399
2024-12-06 19:08:06,253 alphafold2_multimer_v3_model_2_seed_000 took 230.0s (21 recycles)
2024-12-06 19:08:17,043 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.2 pTM=0.632 ipTM=0.144
2024-12-06 19:08:27,515 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.9 pTM=0.646 ipTM=0.136 tol=7.47
2024-12-06 19:08:37,974 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.1 pTM=0.648 ipTM=0.146 tol=8.15
2024-12-06 19:08:48,440 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.2 pTM=0.661 ipTM=0.165 tol=6.77
2024-12-06 19:08:58,937 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.8 pTM=0.678 ipTM=0.195 tol=4.41
2024-12-06 19:09:09,391 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.2 pTM=0.72 ipTM=0.328 tol=2.83
2024-12-06 19:09:19,867 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85 pTM=0.723 ipTM=0.326 tol=1.22
2024-12-06 19:09:30,342 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=85.4 pTM=0.744 ipTM=0.396 tol=0.479
2024-12-06 19:09:30,342 alphafold2_multimer_v3_model_3_seed_000 took 83.8s (7 recycles)
2024-12-06 19:09:41,155 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.5 pTM=0.649 ipTM=0.153
2024-12-06 19:09:51,671 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.8 pTM=0.661 ipTM=0.153 tol=10.5
2024-12-06 19:10:02,212 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.5 pTM=0.666 ipTM=0.167 tol=9.86
2024-12-06 19:10:12,750 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.1 pTM=0.662 ipTM=0.154 tol=9.92
2024-12-06 19:10:23,277 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.8 pTM=0.665 ipTM=0.158 tol=3.69
2024-12-06 19:10:33,751 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.1 pTM=0.674 ipTM=0.196 tol=3.85
2024-12-06 19:10:44,250 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.4 pTM=0.688 ipTM=0.229 tol=2.11
2024-12-06 19:10:54,751 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.9 pTM=0.7 ipTM=0.267 tol=1
2024-12-06 19:11:05,242 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.4 pTM=0.711 ipTM=0.304 tol=1.14
2024-12-06 19:11:15,738 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.9 pTM=0.717 ipTM=0.324 tol=0.704
2024-12-06 19:11:26,246 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.7 pTM=0.715 ipTM=0.315 tol=0.729
2024-12-06 19:11:36,733 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=81.4 pTM=0.729 ipTM=0.361 tol=1.05
2024-12-06 19:11:47,223 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=81.9 pTM=0.733 ipTM=0.38 tol=0.546
2024-12-06 19:11:57,716 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=82.2 pTM=0.739 ipTM=0.394 tol=0.766
2024-12-06 19:12:08,219 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=82.9 pTM=0.743 ipTM=0.402 tol=0.762
2024-12-06 19:12:18,725 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=82.3 pTM=0.739 ipTM=0.391 tol=0.665
2024-12-06 19:12:29,235 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=82.1 pTM=0.732 ipTM=0.368 tol=0.907
2024-12-06 19:12:39,738 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=82.6 pTM=0.737 ipTM=0.388 tol=0.587
2024-12-06 19:12:50,236 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=82.5 pTM=0.734 ipTM=0.381 tol=0.67
2024-12-06 19:13:00,749 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=82.8 pTM=0.742 ipTM=0.392 tol=0.424
2024-12-06 19:13:00,750 alphafold2_multimer_v3_model_4_seed_000 took 210.1s (19 recycles)
2024-12-06 19:13:11,611 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.9 pTM=0.656 ipTM=0.152
2024-12-06 19:13:22,095 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.4 pTM=0.647 ipTM=0.141 tol=5.56
2024-12-06 19:13:32,600 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.4 pTM=0.651 ipTM=0.145 tol=4.58
2024-12-06 19:13:43,081 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.4 pTM=0.653 ipTM=0.155 tol=4.64
2024-12-06 19:13:53,614 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.1 pTM=0.66 ipTM=0.151 tol=2.44
2024-12-06 19:14:04,105 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.3 pTM=0.655 ipTM=0.153 tol=2.52
2024-12-06 19:14:14,617 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.1 pTM=0.661 ipTM=0.156 tol=1.82
2024-12-06 19:14:25,117 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.9 pTM=0.66 ipTM=0.159 tol=3.9
2024-12-06 19:14:35,611 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.5 pTM=0.666 ipTM=0.18 tol=5.75
2024-12-06 19:14:46,084 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=81 pTM=0.68 ipTM=0.227 tol=2.51
2024-12-06 19:14:56,575 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=82.5 pTM=0.712 ipTM=0.311 tol=1.27
2024-12-06 19:15:07,068 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=83.6 pTM=0.726 ipTM=0.348 tol=1.18
2024-12-06 19:15:17,549 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=83.7 pTM=0.732 ipTM=0.375 tol=0.864
2024-12-06 19:15:28,025 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=83.9 pTM=0.731 ipTM=0.371 tol=0.568
2024-12-06 19:15:38,536 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=84.2 pTM=0.742 ipTM=0.39 tol=0.499
2024-12-06 19:15:38,537 alphafold2_multimer_v3_model_5_seed_000 took 157.5s (14 recycles)
2024-12-06 19:15:38,863 reranking models by 'multimer' metric
2024-12-06 19:15:41,165 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 19:16:07,861 Relaxation took 29.0s
2024-12-06 19:16:07,861 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.7 pTM=0.745 ipTM=0.399
2024-12-06 19:16:39,881 Relaxation took 32.0s
2024-12-06 19:16:39,881 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.4 pTM=0.744 ipTM=0.396
2024-12-06 19:17:00,900 Relaxation took 21.0s
2024-12-06 19:17:00,901 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.8 pTM=0.742 ipTM=0.392
2024-12-06 19:17:21,921 Relaxation took 21.0s
2024-12-06 19:17:21,921 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.2 pTM=0.742 ipTM=0.39
2024-12-06 19:17:42,484 Relaxation took 20.6s
2024-12-06 19:17:42,484 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.6 pTM=0.686 ipTM=0.268
2024-12-06 19:17:43,918 Done