2024-12-06 19:28:44,917 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 19:28:45,211 Running on GPU
2024-12-06 19:28:49,607 Found 6 citations for tools or databases
2024-12-06 19:28:49,608 Query 1/1: KLHL15_ACP5 (length 929)
2024-12-06 19:28:49,896 Sleeping for 8s. Reason: PENDING
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2024-12-06 19:31:18,801 Sleeping for 8s. Reason: PENDING
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2024-12-06 19:33:00,876 Setting max_seq=508, max_extra_seq=2048
2024-12-06 19:36:04,378 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=85.6 pTM=0.595 ipTM=0.145
2024-12-06 19:36:22,523 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=86.3 pTM=0.6 ipTM=0.165 tol=6.96
2024-12-06 19:36:40,702 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=86.1 pTM=0.592 ipTM=0.175 tol=1.76
2024-12-06 19:36:58,903 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=86.4 pTM=0.595 ipTM=0.195 tol=1.06
2024-12-06 19:37:17,115 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=86.6 pTM=0.605 ipTM=0.227 tol=1.1
2024-12-06 19:37:35,334 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=87 pTM=0.614 ipTM=0.26 tol=1.01
2024-12-06 19:37:53,569 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=86.9 pTM=0.612 ipTM=0.25 tol=0.629
2024-12-06 19:38:11,830 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=87.1 pTM=0.619 ipTM=0.271 tol=0.699
2024-12-06 19:38:30,096 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=87.1 pTM=0.616 ipTM=0.268 tol=0.671
2024-12-06 19:38:48,376 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=86.9 pTM=0.615 ipTM=0.27 tol=0.53
2024-12-06 19:39:06,665 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=87.1 pTM=0.617 ipTM=0.268 tol=0.396
2024-12-06 19:39:06,665 alphafold2_multimer_v3_model_1_seed_000 took 360.5s (10 recycles)
2024-12-06 19:39:25,571 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=86.2 pTM=0.61 ipTM=0.178
2024-12-06 19:39:43,914 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=86.4 pTM=0.606 ipTM=0.222 tol=7.14
2024-12-06 19:40:02,211 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=86.2 pTM=0.598 ipTM=0.207 tol=1.01
2024-12-06 19:40:20,526 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=86.1 pTM=0.596 ipTM=0.213 tol=0.788
2024-12-06 19:40:38,825 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=86.1 pTM=0.598 ipTM=0.226 tol=0.587
2024-12-06 19:40:57,125 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=86.1 pTM=0.603 ipTM=0.243 tol=0.286
2024-12-06 19:40:57,126 alphafold2_multimer_v3_model_2_seed_000 took 109.9s (5 recycles)
2024-12-06 19:41:16,094 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.7 pTM=0.635 ipTM=0.22
2024-12-06 19:41:34,499 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=86.9 pTM=0.617 ipTM=0.194 tol=2.47
2024-12-06 19:41:52,878 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=86.8 pTM=0.615 ipTM=0.197 tol=0.96
2024-12-06 19:42:11,264 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=87 pTM=0.615 ipTM=0.201 tol=1.12
2024-12-06 19:42:29,665 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=87.1 pTM=0.618 ipTM=0.208 tol=1.02
2024-12-06 19:42:48,054 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=87.1 pTM=0.618 ipTM=0.204 tol=1.22
2024-12-06 19:43:06,456 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=87.2 pTM=0.619 ipTM=0.205 tol=1.19
2024-12-06 19:43:24,851 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=87.3 pTM=0.618 ipTM=0.199 tol=1.41
2024-12-06 19:43:43,225 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=87.2 pTM=0.62 ipTM=0.213 tol=1.4
2024-12-06 19:44:01,608 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=87.3 pTM=0.62 ipTM=0.211 tol=0.965
2024-12-06 19:44:20,000 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=87.3 pTM=0.625 ipTM=0.229 tol=1.48
2024-12-06 19:44:38,393 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=87.3 pTM=0.62 ipTM=0.209 tol=1.23
2024-12-06 19:44:56,790 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=87.3 pTM=0.623 ipTM=0.229 tol=1.36
2024-12-06 19:45:15,185 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=87.3 pTM=0.623 ipTM=0.22 tol=1.05
2024-12-06 19:45:33,580 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=87.2 pTM=0.62 ipTM=0.215 tol=1.34
2024-12-06 19:45:51,962 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=87.1 pTM=0.615 ipTM=0.196 tol=1.36
2024-12-06 19:46:10,347 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=87.3 pTM=0.623 ipTM=0.225 tol=1.41
2024-12-06 19:46:28,737 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=87.2 pTM=0.621 ipTM=0.209 tol=1.1
2024-12-06 19:46:47,132 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=87.2 pTM=0.622 ipTM=0.219 tol=1.04
2024-12-06 19:47:05,535 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=87.2 pTM=0.621 ipTM=0.207 tol=1.56
2024-12-06 19:47:23,927 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=87.3 pTM=0.624 ipTM=0.224 tol=1.74
2024-12-06 19:47:42,321 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=87.2 pTM=0.621 ipTM=0.216 tol=2.06
2024-12-06 19:48:00,700 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=87.4 pTM=0.625 ipTM=0.223 tol=2.25
2024-12-06 19:48:19,073 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=87.1 pTM=0.624 ipTM=0.218 tol=0.942
2024-12-06 19:48:37,432 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=87.2 pTM=0.625 ipTM=0.217 tol=0.555
2024-12-06 19:48:55,804 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=87.1 pTM=0.627 ipTM=0.224 tol=0.766
2024-12-06 19:49:14,156 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=85.4 pTM=0.626 ipTM=0.23 tol=5.46
2024-12-06 19:49:32,518 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=86.9 pTM=0.625 ipTM=0.225 tol=6
2024-12-06 19:49:50,893 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=87.2 pTM=0.626 ipTM=0.222 tol=1.45
2024-12-06 19:50:09,249 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=87 pTM=0.631 ipTM=0.234 tol=0.719
2024-12-06 19:50:27,613 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=87.2 pTM=0.627 ipTM=0.221 tol=0.646
2024-12-06 19:50:27,614 alphafold2_multimer_v3_model_3_seed_000 took 570.0s (30 recycles)
2024-12-06 19:50:46,651 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=87.2 pTM=0.6 ipTM=0.136
2024-12-06 19:51:05,099 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=86.7 pTM=0.597 ipTM=0.16 tol=14
2024-12-06 19:51:23,534 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=86.7 pTM=0.592 ipTM=0.165 tol=1.5
2024-12-06 19:51:41,936 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=86.4 pTM=0.595 ipTM=0.169 tol=0.509
2024-12-06 19:52:00,318 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=86.4 pTM=0.597 ipTM=0.182 tol=0.684
2024-12-06 19:52:18,702 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=86.2 pTM=0.6 ipTM=0.18 tol=0.25
2024-12-06 19:52:18,702 alphafold2_multimer_v3_model_4_seed_000 took 110.6s (5 recycles)
2024-12-06 19:52:37,708 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=86.6 pTM=0.612 ipTM=0.182
2024-12-06 19:52:56,179 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=86.8 pTM=0.604 ipTM=0.169 tol=2.69
2024-12-06 19:53:14,631 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=86.8 pTM=0.601 ipTM=0.174 tol=1.78
2024-12-06 19:53:33,081 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=87 pTM=0.603 ipTM=0.171 tol=1.03
2024-12-06 19:53:51,523 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=87 pTM=0.604 ipTM=0.174 tol=1.89
2024-12-06 19:54:09,980 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=87.1 pTM=0.604 ipTM=0.174 tol=0.989
2024-12-06 19:54:28,436 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=87.2 pTM=0.606 ipTM=0.174 tol=0.712
2024-12-06 19:54:46,887 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=87.2 pTM=0.603 ipTM=0.171 tol=0.507
2024-12-06 19:55:05,335 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=87.2 pTM=0.602 ipTM=0.169 tol=1.05
2024-12-06 19:55:23,781 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=87.2 pTM=0.604 ipTM=0.171 tol=0.621
2024-12-06 19:55:42,230 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=87.2 pTM=0.605 ipTM=0.172 tol=0.445
2024-12-06 19:55:42,231 alphafold2_multimer_v3_model_5_seed_000 took 203.0s (10 recycles)
2024-12-06 19:55:42,766 reranking models by 'multimer' metric
2024-12-06 19:55:46,652 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 19:56:26,379 Relaxation took 43.6s
2024-12-06 19:56:26,379 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=87.1 pTM=0.617 ipTM=0.268
2024-12-06 20:00:28,792 Relaxation took 242.4s
2024-12-06 20:00:28,793 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=86.1 pTM=0.603 ipTM=0.243
2024-12-06 20:01:21,970 Relaxation took 53.2s
2024-12-06 20:01:21,971 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=87.2 pTM=0.627 ipTM=0.221
2024-12-06 20:02:54,979 Relaxation took 93.0s
2024-12-06 20:02:54,979 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=86.2 pTM=0.6 ipTM=0.18
2024-12-06 20:04:01,496 Relaxation took 66.5s
2024-12-06 20:04:01,496 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=87.2 pTM=0.605 ipTM=0.172
2024-12-06 20:04:03,164 Done