2024-12-06 19:58:33,449 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 19:58:33,772 Running on GPU
2024-12-06 19:58:38,123 Found 6 citations for tools or databases
2024-12-06 19:58:38,123 Query 1/1: KLHL15_WDR8 (length 1064)
2024-12-06 19:58:38,463 Sleeping for 10s. Reason: PENDING
2024-12-06 19:58:48,721 Sleeping for 6s. Reason: RUNNING
2024-12-06 19:58:54,977 Sleeping for 8s. Reason: RUNNING
2024-12-06 19:59:03,241 Sleeping for 9s. Reason: RUNNING
2024-12-06 19:59:12,502 Sleeping for 7s. Reason: RUNNING
2024-12-06 19:59:19,758 Sleeping for 7s. Reason: RUNNING
2024-12-06 19:59:27,011 Sleeping for 8s. Reason: RUNNING
2024-12-06 19:59:35,273 Sleeping for 7s. Reason: RUNNING
2024-12-06 19:59:42,532 Sleeping for 5s. Reason: RUNNING
2024-12-06 19:59:47,785 Sleeping for 10s. Reason: RUNNING
2024-12-06 19:59:58,047 Sleeping for 7s. Reason: RUNNING
2024-12-06 20:00:05,314 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:00:15,573 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:00:21,825 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:00:32,112 Sleeping for 8s. Reason: RUNNING
2024-12-06 20:00:40,370 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:00:50,647 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:00:56,905 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:01:03,158 Sleeping for 5s. Reason: RUNNING
2024-12-06 20:01:08,413 Sleeping for 9s. Reason: RUNNING
2024-12-06 20:01:17,679 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:01:27,941 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:01:38,205 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:01:44,456 Sleeping for 7s. Reason: RUNNING
2024-12-06 20:01:53,342 Sleeping for 8s. Reason: PENDING
2024-12-06 20:02:01,600 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:02:07,853 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:02:14,116 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:02:24,389 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:02:34,660 Sleeping for 8s. Reason: RUNNING
2024-12-06 20:02:42,916 Sleeping for 8s. Reason: RUNNING
2024-12-06 20:02:51,176 Sleeping for 5s. Reason: RUNNING
2024-12-06 20:02:56,440 Sleeping for 9s. Reason: RUNNING
2024-12-06 20:03:05,706 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:03:11,966 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:03:18,226 Sleeping for 7s. Reason: RUNNING
2024-12-06 20:03:25,483 Sleeping for 5s. Reason: RUNNING
2024-12-06 20:03:30,742 Sleeping for 7s. Reason: RUNNING
2024-12-06 20:03:38,009 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:03:44,260 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:03:57,588 Setting max_seq=508, max_extra_seq=2048
2024-12-06 20:06:13,086 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=84.8 pTM=0.551 ipTM=0.205
2024-12-06 20:06:35,760 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=85 pTM=0.559 ipTM=0.223 tol=7.32
2024-12-06 20:06:58,423 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=85.6 pTM=0.637 ipTM=0.532 tol=6.1
2024-12-06 20:07:21,157 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=87.6 pTM=0.737 ipTM=0.737 tol=0.896
2024-12-06 20:07:43,997 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=87.6 pTM=0.749 ipTM=0.77 tol=0.341
2024-12-06 20:07:43,998 alphafold2_multimer_v3_model_1_seed_000 took 221.2s (4 recycles)
2024-12-06 20:08:07,730 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.7 pTM=0.542 ipTM=0.174
2024-12-06 20:08:30,763 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=84.7 pTM=0.541 ipTM=0.177 tol=4.71
2024-12-06 20:08:53,774 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.5 pTM=0.538 ipTM=0.209 tol=8.62
2024-12-06 20:09:16,693 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=86.9 pTM=0.693 ipTM=0.662 tol=10.7
2024-12-06 20:09:39,619 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=87.1 pTM=0.711 ipTM=0.694 tol=0.505
2024-12-06 20:10:02,568 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=87.1 pTM=0.73 ipTM=0.711 tol=0.222
2024-12-06 20:10:02,569 alphafold2_multimer_v3_model_2_seed_000 took 137.9s (5 recycles)
2024-12-06 20:10:26,395 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=85.6 pTM=0.537 ipTM=0.136
2024-12-06 20:10:49,529 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=85.2 pTM=0.538 ipTM=0.14 tol=9.59
2024-12-06 20:11:12,678 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.9 pTM=0.532 ipTM=0.129 tol=17.5
2024-12-06 20:11:35,852 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=85.4 pTM=0.533 ipTM=0.128 tol=18.2
2024-12-06 20:11:59,027 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85 pTM=0.53 ipTM=0.127 tol=11.7
2024-12-06 20:12:22,160 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.1 pTM=0.538 ipTM=0.146 tol=18.2
2024-12-06 20:12:45,144 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.4 pTM=0.602 ipTM=0.46 tol=9.94
2024-12-06 20:13:08,112 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=87.6 pTM=0.761 ipTM=0.744 tol=2.83
2024-12-06 20:13:31,118 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=88.2 pTM=0.785 ipTM=0.796 tol=0.428
2024-12-06 20:13:31,119 alphafold2_multimer_v3_model_3_seed_000 took 207.9s (8 recycles)
2024-12-06 20:13:54,943 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=85.7 pTM=0.567 ipTM=0.209
2024-12-06 20:14:18,028 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=84.9 pTM=0.564 ipTM=0.194 tol=6.16
2024-12-06 20:14:41,136 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=85.1 pTM=0.55 ipTM=0.178 tol=2.49
2024-12-06 20:15:04,261 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85.1 pTM=0.552 ipTM=0.176 tol=1.74
2024-12-06 20:15:27,326 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=85.2 pTM=0.553 ipTM=0.203 tol=1.5
2024-12-06 20:15:50,449 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=85.2 pTM=0.553 ipTM=0.178 tol=1.28
2024-12-06 20:16:13,583 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=85.3 pTM=0.551 ipTM=0.177 tol=4.45
2024-12-06 20:16:36,603 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=85.2 pTM=0.569 ipTM=0.273 tol=7.89
2024-12-06 20:16:59,715 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84.9 pTM=0.553 ipTM=0.183 tol=3.28
2024-12-06 20:17:22,822 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84.8 pTM=0.54 ipTM=0.164 tol=5.62
2024-12-06 20:17:45,892 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=84.8 pTM=0.546 ipTM=0.179 tol=4.61
2024-12-06 20:18:08,945 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=85.4 pTM=0.555 ipTM=0.186 tol=4.51
2024-12-06 20:18:32,037 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=85 pTM=0.545 ipTM=0.171 tol=5.6
2024-12-06 20:18:55,118 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=84.8 pTM=0.543 ipTM=0.167 tol=2.57
2024-12-06 20:19:18,146 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=84.6 pTM=0.553 ipTM=0.241 tol=5.7
2024-12-06 20:19:41,195 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=84.9 pTM=0.548 ipTM=0.176 tol=2.17
2024-12-06 20:20:04,293 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=85 pTM=0.541 ipTM=0.161 tol=5.52
2024-12-06 20:20:27,308 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=84.9 pTM=0.555 ipTM=0.21 tol=7.22
2024-12-06 20:20:50,392 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=85.1 pTM=0.549 ipTM=0.169 tol=2.6
2024-12-06 20:21:13,463 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=84.8 pTM=0.542 ipTM=0.162 tol=5.37
2024-12-06 20:21:36,522 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=84.6 pTM=0.548 ipTM=0.171 tol=5.63
2024-12-06 20:21:59,576 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=84.6 pTM=0.542 ipTM=0.163 tol=1.98
2024-12-06 20:22:22,693 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=85.2 pTM=0.536 ipTM=0.133 tol=7.96
2024-12-06 20:22:45,800 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=85.2 pTM=0.536 ipTM=0.13 tol=4.55
2024-12-06 20:23:08,880 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=85.1 pTM=0.538 ipTM=0.14 tol=3.56
2024-12-06 20:23:32,014 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=84.9 pTM=0.538 ipTM=0.132 tol=5.22
2024-12-06 20:23:55,180 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=84.6 pTM=0.538 ipTM=0.132 tol=2.37
2024-12-06 20:24:18,316 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=85.3 pTM=0.543 ipTM=0.139 tol=5.2
2024-12-06 20:24:41,485 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=84.9 pTM=0.542 ipTM=0.133 tol=2.03
2024-12-06 20:25:04,624 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=84.6 pTM=0.542 ipTM=0.139 tol=4.59
2024-12-06 20:25:27,793 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=84.9 pTM=0.545 ipTM=0.14 tol=1.17
2024-12-06 20:25:27,794 alphafold2_multimer_v3_model_4_seed_000 took 716.0s (30 recycles)
2024-12-06 20:25:51,623 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=84.8 pTM=0.574 ipTM=0.379
2024-12-06 20:26:14,834 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=85.4 pTM=0.539 ipTM=0.154 tol=6.43
2024-12-06 20:26:37,970 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=85.4 pTM=0.546 ipTM=0.175 tol=23.1
2024-12-06 20:27:01,136 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=85.6 pTM=0.539 ipTM=0.146 tol=3.33
2024-12-06 20:27:24,346 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=85.7 pTM=0.538 ipTM=0.139 tol=2.96
2024-12-06 20:27:47,515 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.3 pTM=0.538 ipTM=0.14 tol=2.02
2024-12-06 20:28:10,736 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=85.8 pTM=0.538 ipTM=0.133 tol=2.62
2024-12-06 20:28:33,938 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.7 pTM=0.531 ipTM=0.139 tol=24.3
2024-12-06 20:28:57,122 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=85.9 pTM=0.542 ipTM=0.163 tol=3.87
2024-12-06 20:29:20,379 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=85.4 pTM=0.531 ipTM=0.127 tol=14.9
2024-12-06 20:29:43,592 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=85.6 pTM=0.54 ipTM=0.134 tol=6.68
2024-12-06 20:30:06,776 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=85.6 pTM=0.54 ipTM=0.138 tol=1.84
2024-12-06 20:30:29,951 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=85.6 pTM=0.54 ipTM=0.137 tol=1.65
2024-12-06 20:30:53,133 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=85.4 pTM=0.538 ipTM=0.134 tol=1.08
2024-12-06 20:31:16,310 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=85.6 pTM=0.537 ipTM=0.133 tol=2.54
2024-12-06 20:31:39,485 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=85.5 pTM=0.537 ipTM=0.136 tol=1.22
2024-12-06 20:32:02,698 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=85.7 pTM=0.539 ipTM=0.135 tol=2.25
2024-12-06 20:32:25,851 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=85.5 pTM=0.538 ipTM=0.138 tol=2.6
2024-12-06 20:32:48,998 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=85.9 pTM=0.541 ipTM=0.136 tol=1.06
2024-12-06 20:33:12,126 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=85.7 pTM=0.542 ipTM=0.142 tol=2.64
2024-12-06 20:33:35,252 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=85.5 pTM=0.539 ipTM=0.136 tol=3.56
2024-12-06 20:33:58,392 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=85.6 pTM=0.533 ipTM=0.131 tol=3.06
2024-12-06 20:34:21,518 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=85.6 pTM=0.539 ipTM=0.133 tol=2.48
2024-12-06 20:34:44,640 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=85.5 pTM=0.534 ipTM=0.131 tol=2.29
2024-12-06 20:35:07,759 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=85.6 pTM=0.536 ipTM=0.131 tol=3.77
2024-12-06 20:35:30,880 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=85.6 pTM=0.537 ipTM=0.133 tol=1.48
2024-12-06 20:35:54,012 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=85.5 pTM=0.538 ipTM=0.132 tol=1.37
2024-12-06 20:36:17,160 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=85.7 pTM=0.537 ipTM=0.131 tol=2.27
2024-12-06 20:36:40,282 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=85.5 pTM=0.538 ipTM=0.133 tol=2.2
2024-12-06 20:37:03,400 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=85.3 pTM=0.538 ipTM=0.137 tol=2.56
2024-12-06 20:37:26,563 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=85.4 pTM=0.533 ipTM=0.13 tol=3.44
2024-12-06 20:37:26,564 alphafold2_multimer_v3_model_5_seed_000 took 718.1s (30 recycles)
2024-12-06 20:37:27,261 reranking models by 'multimer' metric
2024-12-06 20:37:28,560 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 20:38:12,397 Relaxation took 45.1s
2024-12-06 20:38:12,397 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=88.2 pTM=0.785 ipTM=0.796
2024-12-06 20:38:43,140 Relaxation took 30.7s
2024-12-06 20:38:43,141 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=87.6 pTM=0.749 ipTM=0.77
2024-12-06 20:39:18,493 Relaxation took 35.4s
2024-12-06 20:39:18,493 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87.1 pTM=0.73 ipTM=0.711
2024-12-06 20:40:59,545 Relaxation took 101.1s
2024-12-06 20:40:59,545 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=84.9 pTM=0.545 ipTM=0.14
2024-12-06 20:41:53,767 Relaxation took 54.2s
2024-12-06 20:41:53,768 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.4 pTM=0.533 ipTM=0.13
2024-12-06 20:41:55,731 Done