2024-12-06 19:59:05,741 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 19:59:06,106 Running on GPU
2024-12-06 19:59:09,814 Found 6 citations for tools or databases
2024-12-06 19:59:09,814 Query 1/1: KLHL18_MYEOV2 (length 631)
2024-12-06 19:59:10,117 Sleeping for 9s. Reason: PENDING
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2024-12-06 20:03:26,841 Setting max_seq=508, max_extra_seq=2031
2024-12-06 20:07:02,848 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=82 pTM=0.604 ipTM=0.321
2024-12-06 20:07:13,357 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.6 pTM=0.568 ipTM=0.368 tol=5.22
2024-12-06 20:07:23,856 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.4 pTM=0.556 ipTM=0.388 tol=1.38
2024-12-06 20:07:34,331 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.4 pTM=0.563 ipTM=0.381 tol=1.06
2024-12-06 20:07:44,808 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.5 pTM=0.566 ipTM=0.385 tol=1.17
2024-12-06 20:07:55,293 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=83.7 pTM=0.568 ipTM=0.38 tol=0.682
2024-12-06 20:08:05,820 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=83.6 pTM=0.562 ipTM=0.377 tol=0.382
2024-12-06 20:08:05,821 alphafold2_multimer_v3_model_1_seed_000 took 272.2s (6 recycles)
2024-12-06 20:08:16,731 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=83.1 pTM=0.537 ipTM=0.237
2024-12-06 20:08:27,301 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=84.4 pTM=0.556 ipTM=0.356 tol=12.5
2024-12-06 20:08:37,845 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.2 pTM=0.571 ipTM=0.372 tol=3.59
2024-12-06 20:08:48,397 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.2 pTM=0.565 ipTM=0.374 tol=0.865
2024-12-06 20:08:58,933 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.4 pTM=0.562 ipTM=0.364 tol=0.951
2024-12-06 20:09:09,499 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.6 pTM=0.569 ipTM=0.378 tol=0.833
2024-12-06 20:09:20,042 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.4 pTM=0.565 ipTM=0.359 tol=0.583
2024-12-06 20:09:30,588 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.2 pTM=0.565 ipTM=0.37 tol=0.345
2024-12-06 20:09:30,589 alphafold2_multimer_v3_model_2_seed_000 took 84.4s (7 recycles)
2024-12-06 20:09:41,515 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=83.9 pTM=0.532 ipTM=0.321
2024-12-06 20:09:52,105 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.3 pTM=0.562 ipTM=0.393 tol=13.2
2024-12-06 20:10:02,680 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.5 pTM=0.601 ipTM=0.404 tol=5.68
2024-12-06 20:10:13,265 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.3 pTM=0.559 ipTM=0.407 tol=1.28
2024-12-06 20:10:23,827 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=84.6 pTM=0.588 ipTM=0.416 tol=0.929
2024-12-06 20:10:34,400 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.6 pTM=0.58 ipTM=0.403 tol=0.461
2024-12-06 20:10:34,401 alphafold2_multimer_v3_model_3_seed_000 took 63.5s (5 recycles)
2024-12-06 20:10:45,328 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=82.8 pTM=0.541 ipTM=0.286
2024-12-06 20:10:55,935 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=83.5 pTM=0.558 ipTM=0.411 tol=6.99
2024-12-06 20:11:06,509 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=83.7 pTM=0.574 ipTM=0.399 tol=1.03
2024-12-06 20:11:17,073 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.8 pTM=0.579 ipTM=0.394 tol=1.24
2024-12-06 20:11:27,631 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.7 pTM=0.567 ipTM=0.398 tol=0.707
2024-12-06 20:11:38,201 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.4 pTM=0.6 ipTM=0.405 tol=0.65
2024-12-06 20:11:48,799 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.2 pTM=0.575 ipTM=0.389 tol=0.823
2024-12-06 20:11:59,351 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.4 pTM=0.6 ipTM=0.373 tol=0.719
2024-12-06 20:12:09,923 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84 pTM=0.568 ipTM=0.362 tol=0.7
2024-12-06 20:12:20,490 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84.6 pTM=0.6 ipTM=0.372 tol=0.739
2024-12-06 20:12:31,065 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=84.1 pTM=0.572 ipTM=0.37 tol=0.765
2024-12-06 20:12:41,630 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=84.2 pTM=0.594 ipTM=0.376 tol=0.597
2024-12-06 20:12:52,207 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=84 pTM=0.57 ipTM=0.375 tol=0.759
2024-12-06 20:13:02,761 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=84.2 pTM=0.596 ipTM=0.38 tol=0.725
2024-12-06 20:13:13,332 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=84 pTM=0.573 ipTM=0.383 tol=0.542
2024-12-06 20:13:23,905 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=84.5 pTM=0.605 ipTM=0.368 tol=0.549
2024-12-06 20:13:34,473 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=84 pTM=0.579 ipTM=0.377 tol=0.595
2024-12-06 20:13:45,052 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=84.4 pTM=0.598 ipTM=0.358 tol=0.713
2024-12-06 20:13:55,626 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=83.9 pTM=0.572 ipTM=0.373 tol=0.631
2024-12-06 20:14:06,194 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=84.3 pTM=0.597 ipTM=0.355 tol=0.768
2024-12-06 20:14:16,785 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=83.9 pTM=0.574 ipTM=0.377 tol=0.685
2024-12-06 20:14:27,341 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=84.2 pTM=0.592 ipTM=0.358 tol=0.587
2024-12-06 20:14:37,910 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=83.9 pTM=0.572 ipTM=0.385 tol=0.679
2024-12-06 20:14:48,478 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=84.4 pTM=0.603 ipTM=0.362 tol=0.871
2024-12-06 20:14:59,046 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=83.9 pTM=0.576 ipTM=0.379 tol=0.809
2024-12-06 20:15:09,618 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=84.2 pTM=0.592 ipTM=0.364 tol=0.875
2024-12-06 20:15:20,194 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=83.8 pTM=0.57 ipTM=0.378 tol=0.674
2024-12-06 20:15:30,757 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=84.2 pTM=0.596 ipTM=0.37 tol=0.675
2024-12-06 20:15:41,321 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=84 pTM=0.57 ipTM=0.375 tol=0.557
2024-12-06 20:15:51,900 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=84.2 pTM=0.597 ipTM=0.38 tol=0.481
2024-12-06 20:15:51,901 alphafold2_multimer_v3_model_4_seed_000 took 317.2s (29 recycles)
2024-12-06 20:16:02,835 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.9 pTM=0.59 ipTM=0.362
2024-12-06 20:16:13,461 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=84.6 pTM=0.661 ipTM=0.419 tol=1.39
2024-12-06 20:16:24,072 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=84.2 pTM=0.614 ipTM=0.419 tol=1.55
2024-12-06 20:16:34,674 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.4 pTM=0.636 ipTM=0.417 tol=1.16
2024-12-06 20:16:45,273 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.2 pTM=0.609 ipTM=0.423 tol=1.13
2024-12-06 20:16:55,893 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=84.6 pTM=0.626 ipTM=0.415 tol=0.557
2024-12-06 20:17:06,488 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=84.1 pTM=0.609 ipTM=0.434 tol=0.845
2024-12-06 20:17:17,086 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=84.5 pTM=0.633 ipTM=0.423 tol=0.705
2024-12-06 20:17:27,681 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=84.4 pTM=0.619 ipTM=0.422 tol=0.539
2024-12-06 20:17:38,267 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=84.5 pTM=0.637 ipTM=0.431 tol=0.499
2024-12-06 20:17:38,267 alphafold2_multimer_v3_model_5_seed_000 took 106.0s (9 recycles)
2024-12-06 20:17:38,607 reranking models by 'multimer' metric
2024-12-06 20:17:41,683 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 20:18:54,785 Relaxation took 76.2s
2024-12-06 20:18:54,785 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.5 pTM=0.637 ipTM=0.431
2024-12-06 20:19:44,431 Relaxation took 49.6s
2024-12-06 20:19:44,431 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=84.6 pTM=0.58 ipTM=0.403
2024-12-06 20:20:25,073 Relaxation took 40.6s
2024-12-06 20:20:25,073 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=84.2 pTM=0.597 ipTM=0.38
2024-12-06 20:21:15,107 Relaxation took 50.0s
2024-12-06 20:21:15,107 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.6 pTM=0.562 ipTM=0.377
2024-12-06 20:22:02,226 Relaxation took 47.1s
2024-12-06 20:22:02,226 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.2 pTM=0.565 ipTM=0.37
2024-12-06 20:22:03,634 Done