2024-12-06 20:04:40,783 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 20:04:41,099 Running on GPU
2024-12-06 20:04:45,055 Found 6 citations for tools or databases
2024-12-06 20:04:45,055 Query 1/1: KLHL18_PCMT1 (length 801)
2024-12-06 20:04:45,370 Sleeping for 9s. Reason: PENDING
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2024-12-06 20:11:31,448 Setting max_seq=508, max_extra_seq=2048
2024-12-06 20:14:30,254 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=87.5 pTM=0.565 ipTM=0.591
2024-12-06 20:14:43,133 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=88.2 pTM=0.601 ipTM=0.569 tol=1.39
2024-12-06 20:14:56,019 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=87.4 pTM=0.561 ipTM=0.516 tol=0.817
2024-12-06 20:15:08,905 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=86.5 pTM=0.53 ipTM=0.424 tol=0.973
2024-12-06 20:15:21,818 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.9 pTM=0.492 ipTM=0.326 tol=1.47
2024-12-06 20:15:34,739 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.4 pTM=0.484 ipTM=0.291 tol=0.548
2024-12-06 20:15:47,695 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.2 pTM=0.471 ipTM=0.27 tol=1.01
2024-12-06 20:16:00,668 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85.5 pTM=0.478 ipTM=0.281 tol=1.15
2024-12-06 20:16:13,645 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=85.3 pTM=0.458 ipTM=0.237 tol=1.06
2024-12-06 20:16:26,628 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=85.1 pTM=0.459 ipTM=0.227 tol=0.474
2024-12-06 20:16:26,628 alphafold2_multimer_v3_model_1_seed_000 took 290.4s (9 recycles)
2024-12-06 20:16:40,069 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=89.3 pTM=0.626 ipTM=0.712
2024-12-06 20:16:53,107 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=90.2 pTM=0.666 ipTM=0.72 tol=1.84
2024-12-06 20:17:06,119 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=89.4 pTM=0.618 ipTM=0.63 tol=0.902
2024-12-06 20:17:19,095 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=89.1 pTM=0.619 ipTM=0.652 tol=0.381
2024-12-06 20:17:19,096 alphafold2_multimer_v3_model_2_seed_000 took 52.1s (3 recycles)
2024-12-06 20:17:32,533 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.1 pTM=0.496 ipTM=0.282
2024-12-06 20:17:45,576 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=88.1 pTM=0.561 ipTM=0.296 tol=1.61
2024-12-06 20:17:58,618 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=87.4 pTM=0.478 ipTM=0.188 tol=1.98
2024-12-06 20:18:11,677 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=87.3 pTM=0.461 ipTM=0.134 tol=6.32
2024-12-06 20:18:24,738 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=87.1 pTM=0.478 ipTM=0.18 tol=13.9
2024-12-06 20:18:37,779 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=86.9 pTM=0.479 ipTM=0.163 tol=2.13
2024-12-06 20:18:50,820 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=86.7 pTM=0.478 ipTM=0.188 tol=1.43
2024-12-06 20:19:03,845 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=86.7 pTM=0.472 ipTM=0.174 tol=1.03
2024-12-06 20:19:16,883 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=86.9 pTM=0.478 ipTM=0.213 tol=1.27
2024-12-06 20:19:29,899 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=86.8 pTM=0.498 ipTM=0.225 tol=0.867
2024-12-06 20:19:42,932 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=86.7 pTM=0.488 ipTM=0.222 tol=0.587
2024-12-06 20:19:55,949 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=86.8 pTM=0.497 ipTM=0.227 tol=0.498
2024-12-06 20:19:55,949 alphafold2_multimer_v3_model_3_seed_000 took 156.4s (11 recycles)
2024-12-06 20:20:09,379 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=83.8 pTM=0.473 ipTM=0.212
2024-12-06 20:20:22,429 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=84.6 pTM=0.441 ipTM=0.163 tol=6.06
2024-12-06 20:20:35,504 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=84.8 pTM=0.45 ipTM=0.14 tol=12.1
2024-12-06 20:20:48,523 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=84.9 pTM=0.479 ipTM=0.181 tol=3.97
2024-12-06 20:21:01,557 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=84.9 pTM=0.457 ipTM=0.162 tol=2.55
2024-12-06 20:21:14,594 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=85.1 pTM=0.464 ipTM=0.14 tol=3.15
2024-12-06 20:21:27,631 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=85.1 pTM=0.471 ipTM=0.173 tol=3.43
2024-12-06 20:21:40,675 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.8 pTM=0.463 ipTM=0.157 tol=1.64
2024-12-06 20:21:53,735 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84.8 pTM=0.463 ipTM=0.164 tol=0.555
2024-12-06 20:22:06,795 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84.8 pTM=0.47 ipTM=0.177 tol=0.986
2024-12-06 20:22:19,863 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=84.7 pTM=0.468 ipTM=0.167 tol=0.712
2024-12-06 20:22:32,923 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=84.8 pTM=0.476 ipTM=0.182 tol=1.06
2024-12-06 20:22:45,971 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=85 pTM=0.472 ipTM=0.184 tol=1.01
2024-12-06 20:22:59,021 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=84.9 pTM=0.48 ipTM=0.202 tol=1.04
2024-12-06 20:23:12,082 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=84.9 pTM=0.47 ipTM=0.185 tol=0.81
2024-12-06 20:23:25,144 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=84.9 pTM=0.482 ipTM=0.199 tol=0.429
2024-12-06 20:23:25,144 alphafold2_multimer_v3_model_4_seed_000 took 208.8s (15 recycles)
2024-12-06 20:23:38,616 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=84.4 pTM=0.507 ipTM=0.275
2024-12-06 20:23:51,719 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=86.9 pTM=0.52 ipTM=0.27 tol=4.14
2024-12-06 20:24:04,838 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=86.7 pTM=0.494 ipTM=0.212 tol=1.4
2024-12-06 20:24:17,949 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=87 pTM=0.487 ipTM=0.139 tol=5.25
2024-12-06 20:24:31,066 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=86.8 pTM=0.473 ipTM=0.139 tol=9.27
2024-12-06 20:24:44,180 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=86.8 pTM=0.488 ipTM=0.136 tol=3.02
2024-12-06 20:24:57,299 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=86.4 pTM=0.469 ipTM=0.139 tol=1.33
2024-12-06 20:25:10,407 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=86.6 pTM=0.472 ipTM=0.138 tol=3.23
2024-12-06 20:25:23,522 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=86.5 pTM=0.469 ipTM=0.138 tol=1.68
2024-12-06 20:25:36,627 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=86.6 pTM=0.482 ipTM=0.139 tol=1.54
2024-12-06 20:25:49,740 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=86.5 pTM=0.474 ipTM=0.137 tol=0.767
2024-12-06 20:26:02,841 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=86.6 pTM=0.487 ipTM=0.139 tol=1.85
2024-12-06 20:26:15,957 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=86.6 pTM=0.474 ipTM=0.14 tol=3.59
2024-12-06 20:26:29,073 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=86.6 pTM=0.481 ipTM=0.14 tol=1.36
2024-12-06 20:26:42,182 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=86.4 pTM=0.462 ipTM=0.137 tol=3.47
2024-12-06 20:26:55,303 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=86.6 pTM=0.472 ipTM=0.14 tol=2.19
2024-12-06 20:27:08,427 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=86.4 pTM=0.474 ipTM=0.14 tol=2.67
2024-12-06 20:27:21,524 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=86.8 pTM=0.481 ipTM=0.143 tol=1.86
2024-12-06 20:27:34,637 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=86.6 pTM=0.472 ipTM=0.145 tol=1.47
2024-12-06 20:27:47,733 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=86.6 pTM=0.485 ipTM=0.141 tol=0.619
2024-12-06 20:28:00,847 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=86.7 pTM=0.478 ipTM=0.143 tol=0.73
2024-12-06 20:28:13,939 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=86.6 pTM=0.483 ipTM=0.141 tol=0.343
2024-12-06 20:28:13,940 alphafold2_multimer_v3_model_5_seed_000 took 288.4s (21 recycles)
2024-12-06 20:28:14,351 reranking models by 'multimer' metric
2024-12-06 20:28:17,199 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 20:29:01,711 Relaxation took 47.4s
2024-12-06 20:29:01,711 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=89.1 pTM=0.619 ipTM=0.652
2024-12-06 20:30:08,068 Relaxation took 66.4s
2024-12-06 20:30:08,068 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=86.8 pTM=0.497 ipTM=0.227
2024-12-06 20:30:31,878 Relaxation took 23.8s
2024-12-06 20:30:31,879 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85.1 pTM=0.459 ipTM=0.227
2024-12-06 20:31:43,732 Relaxation took 71.9s
2024-12-06 20:31:43,733 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=84.9 pTM=0.482 ipTM=0.199
2024-12-06 20:32:25,512 Relaxation took 41.8s
2024-12-06 20:32:25,512 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=86.6 pTM=0.483 ipTM=0.141
2024-12-06 20:32:26,970 Done