2024-12-06 20:42:31,868 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 20:42:32,190 Running on GPU
2024-12-06 20:42:35,996 Found 6 citations for tools or databases
2024-12-06 20:42:35,996 Query 1/1: KLHL22_C7orf55 (length 747)
2024-12-06 20:42:36,293 Sleeping for 9s. Reason: PENDING
2024-12-06 20:42:45,548 Sleeping for 9s. Reason: RUNNING
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2024-12-06 20:44:26,080 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:44:37,689 Sleeping for 10s. Reason: PENDING
2024-12-06 20:44:47,946 Sleeping for 7s. Reason: PENDING
2024-12-06 20:44:55,207 Sleeping for 10s. Reason: RUNNING
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2024-12-06 20:45:28,644 Sleeping for 9s. Reason: RUNNING
2024-12-06 20:45:37,907 Sleeping for 5s. Reason: RUNNING
2024-12-06 20:45:43,163 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:45:53,576 Sleeping for 10s. Reason: RUNNING
2024-12-06 20:46:03,834 Sleeping for 5s. Reason: RUNNING
2024-12-06 20:46:09,090 Sleeping for 6s. Reason: RUNNING
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2024-12-06 20:46:22,605 Sleeping for 6s. Reason: RUNNING
2024-12-06 20:46:31,286 Setting max_seq=508, max_extra_seq=2048
2024-12-06 20:49:16,967 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.9 pTM=0.722 ipTM=0.165
2024-12-06 20:49:28,051 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.8 pTM=0.739 ipTM=0.261 tol=6.59
2024-12-06 20:49:39,166 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.8 pTM=0.744 ipTM=0.264 tol=2.13
2024-12-06 20:49:50,272 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.6 pTM=0.739 ipTM=0.283 tol=2.77
2024-12-06 20:50:01,400 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.9 pTM=0.74 ipTM=0.276 tol=0.903
2024-12-06 20:50:12,537 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.1 pTM=0.746 ipTM=0.312 tol=1.19
2024-12-06 20:50:23,681 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=78 pTM=0.741 ipTM=0.294 tol=0.961
2024-12-06 20:50:34,847 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=78.1 pTM=0.741 ipTM=0.299 tol=0.882
2024-12-06 20:50:46,012 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=78.1 pTM=0.743 ipTM=0.307 tol=0.789
2024-12-06 20:50:57,181 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=77.9 pTM=0.742 ipTM=0.306 tol=0.467
2024-12-06 20:50:57,182 alphafold2_multimer_v3_model_1_seed_000 took 260.6s (9 recycles)
2024-12-06 20:51:08,739 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.4 pTM=0.726 ipTM=0.187
2024-12-06 20:51:19,972 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.7 pTM=0.735 ipTM=0.209 tol=3.79
2024-12-06 20:51:31,235 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.9 pTM=0.737 ipTM=0.209 tol=2.39
2024-12-06 20:51:42,477 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.8 pTM=0.732 ipTM=0.232 tol=1.32
2024-12-06 20:51:53,710 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.9 pTM=0.731 ipTM=0.223 tol=1.03
2024-12-06 20:52:04,947 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.9 pTM=0.731 ipTM=0.215 tol=0.579
2024-12-06 20:52:16,186 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.8 pTM=0.73 ipTM=0.216 tol=0.56
2024-12-06 20:52:27,446 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81 pTM=0.731 ipTM=0.221 tol=0.766
2024-12-06 20:52:38,687 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=80.9 pTM=0.73 ipTM=0.226 tol=0.895
2024-12-06 20:52:49,927 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=80.9 pTM=0.73 ipTM=0.226 tol=0.691
2024-12-06 20:53:01,172 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=80.8 pTM=0.729 ipTM=0.218 tol=0.973
2024-12-06 20:53:12,418 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=80.8 pTM=0.729 ipTM=0.22 tol=0.717
2024-12-06 20:53:23,666 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=80.8 pTM=0.729 ipTM=0.214 tol=1.35
2024-12-06 20:53:34,930 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=80.9 pTM=0.733 ipTM=0.213 tol=1.56
2024-12-06 20:53:46,178 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=80.7 pTM=0.731 ipTM=0.215 tol=0.87
2024-12-06 20:53:57,421 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=80.6 pTM=0.73 ipTM=0.211 tol=1.48
2024-12-06 20:54:08,650 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=80.5 pTM=0.728 ipTM=0.212 tol=0.956
2024-12-06 20:54:19,912 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=80.7 pTM=0.73 ipTM=0.22 tol=0.437
2024-12-06 20:54:19,913 alphafold2_multimer_v3_model_2_seed_000 took 202.4s (17 recycles)
2024-12-06 20:54:31,575 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.2 pTM=0.724 ipTM=0.18
2024-12-06 20:54:42,888 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.5 pTM=0.74 ipTM=0.242 tol=5.25
2024-12-06 20:54:54,209 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78 pTM=0.742 ipTM=0.252 tol=4.25
2024-12-06 20:55:05,505 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=77.9 pTM=0.737 ipTM=0.251 tol=5
2024-12-06 20:55:16,812 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.1 pTM=0.737 ipTM=0.237 tol=5.82
2024-12-06 20:55:28,113 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=78.3 pTM=0.741 ipTM=0.263 tol=3
2024-12-06 20:55:39,393 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=78 pTM=0.738 ipTM=0.255 tol=3.65
2024-12-06 20:55:50,687 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=78.2 pTM=0.74 ipTM=0.267 tol=2.87
2024-12-06 20:56:01,977 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.2 pTM=0.741 ipTM=0.263 tol=4.14
2024-12-06 20:56:13,248 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=78.3 pTM=0.74 ipTM=0.262 tol=1.71
2024-12-06 20:56:24,538 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=78.2 pTM=0.743 ipTM=0.268 tol=2.15
2024-12-06 20:56:35,824 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=78.4 pTM=0.741 ipTM=0.273 tol=1.66
2024-12-06 20:56:47,110 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=78.2 pTM=0.741 ipTM=0.268 tol=1.45
2024-12-06 20:56:58,418 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.6 pTM=0.745 ipTM=0.273 tol=1.48
2024-12-06 20:57:09,712 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=78.2 pTM=0.744 ipTM=0.274 tol=1.92
2024-12-06 20:57:20,983 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78.2 pTM=0.74 ipTM=0.267 tol=1.79
2024-12-06 20:57:32,255 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.2 pTM=0.742 ipTM=0.269 tol=1.39
2024-12-06 20:57:43,537 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78.2 pTM=0.74 ipTM=0.263 tol=1.55
2024-12-06 20:57:54,817 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=78.1 pTM=0.741 ipTM=0.272 tol=1.74
2024-12-06 20:58:06,109 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=78.2 pTM=0.741 ipTM=0.266 tol=1.18
2024-12-06 20:58:17,401 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=78.2 pTM=0.743 ipTM=0.27 tol=1.38
2024-12-06 20:58:28,702 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=78.2 pTM=0.743 ipTM=0.27 tol=1.04
2024-12-06 20:58:39,996 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=78.1 pTM=0.744 ipTM=0.282 tol=1.28
2024-12-06 20:58:51,290 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=78.2 pTM=0.744 ipTM=0.278 tol=1.29
2024-12-06 20:59:02,572 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=78.4 pTM=0.744 ipTM=0.274 tol=1.24
2024-12-06 20:59:13,855 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=78.2 pTM=0.743 ipTM=0.275 tol=1.08
2024-12-06 20:59:25,143 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=78.2 pTM=0.741 ipTM=0.265 tol=0.519
2024-12-06 20:59:36,433 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=78.1 pTM=0.742 ipTM=0.27 tol=0.87
2024-12-06 20:59:47,710 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=78.1 pTM=0.741 ipTM=0.268 tol=0.926
2024-12-06 20:59:58,993 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=78.1 pTM=0.745 ipTM=0.284 tol=1.18
2024-12-06 21:00:10,266 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=78.2 pTM=0.742 ipTM=0.272 tol=1.75
2024-12-06 21:00:10,267 alphafold2_multimer_v3_model_3_seed_000 took 350.0s (30 recycles)
2024-12-06 21:00:21,931 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.8 pTM=0.741 ipTM=0.263
2024-12-06 21:00:33,257 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78 pTM=0.743 ipTM=0.264 tol=7.58
2024-12-06 21:00:44,593 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.1 pTM=0.75 ipTM=0.28 tol=9.68
2024-12-06 21:00:55,890 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.8 pTM=0.748 ipTM=0.293 tol=2.16
2024-12-06 21:01:07,199 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.1 pTM=0.753 ipTM=0.295 tol=1.87
2024-12-06 21:01:18,498 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.2 pTM=0.755 ipTM=0.318 tol=1.04
2024-12-06 21:01:29,779 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.1 pTM=0.754 ipTM=0.318 tol=0.914
2024-12-06 21:01:41,054 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.1 pTM=0.752 ipTM=0.317 tol=0.646
2024-12-06 21:01:52,350 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.2 pTM=0.754 ipTM=0.312 tol=0.8
2024-12-06 21:02:03,624 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.2 pTM=0.754 ipTM=0.321 tol=0.438
2024-12-06 21:02:03,624 alphafold2_multimer_v3_model_4_seed_000 took 113.0s (9 recycles)
2024-12-06 21:02:15,272 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.3 pTM=0.733 ipTM=0.23
2024-12-06 21:02:26,586 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77 pTM=0.736 ipTM=0.226 tol=3.12
2024-12-06 21:02:37,910 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77 pTM=0.737 ipTM=0.245 tol=1.24
2024-12-06 21:02:49,209 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.3 pTM=0.737 ipTM=0.371 tol=1.35
2024-12-06 21:03:00,513 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.8 pTM=0.738 ipTM=0.36 tol=3.93
2024-12-06 21:03:11,811 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.2 pTM=0.738 ipTM=0.37 tol=3.09
2024-12-06 21:03:23,106 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.6 pTM=0.735 ipTM=0.361 tol=1.95
2024-12-06 21:03:34,387 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.8 pTM=0.736 ipTM=0.375 tol=1.92
2024-12-06 21:03:45,695 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.8 pTM=0.739 ipTM=0.378 tol=1.19
2024-12-06 21:03:56,988 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.8 pTM=0.738 ipTM=0.376 tol=1.53
2024-12-06 21:04:08,286 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.6 pTM=0.738 ipTM=0.367 tol=0.924
2024-12-06 21:04:19,577 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.6 pTM=0.737 ipTM=0.384 tol=1.24
2024-12-06 21:04:30,879 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.6 pTM=0.738 ipTM=0.392 tol=1.25
2024-12-06 21:04:42,176 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.8 pTM=0.741 ipTM=0.379 tol=1.78
2024-12-06 21:04:53,466 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=78.6 pTM=0.741 ipTM=0.389 tol=1.7
2024-12-06 21:05:04,758 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.5 pTM=0.739 ipTM=0.39 tol=1.03
2024-12-06 21:05:16,050 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=78.5 pTM=0.74 ipTM=0.394 tol=0.756
2024-12-06 21:05:27,349 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78.8 pTM=0.74 ipTM=0.406 tol=3.18
2024-12-06 21:05:38,640 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=78.8 pTM=0.739 ipTM=0.387 tol=2.49
2024-12-06 21:05:49,940 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=78.6 pTM=0.738 ipTM=0.389 tol=1.07
2024-12-06 21:06:01,229 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78.7 pTM=0.739 ipTM=0.392 tol=0.69
2024-12-06 21:06:12,535 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=78.8 pTM=0.74 ipTM=0.387 tol=0.598
2024-12-06 21:06:23,828 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=78.7 pTM=0.739 ipTM=0.392 tol=1.16
2024-12-06 21:06:35,129 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=78.7 pTM=0.74 ipTM=0.388 tol=1.56
2024-12-06 21:06:46,421 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=78.9 pTM=0.74 ipTM=0.391 tol=1.26
2024-12-06 21:06:57,702 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=78.8 pTM=0.739 ipTM=0.402 tol=1.04
2024-12-06 21:07:09,000 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=78.9 pTM=0.74 ipTM=0.401 tol=1.14
2024-12-06 21:07:20,283 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=78.6 pTM=0.739 ipTM=0.397 tol=1.5
2024-12-06 21:07:31,563 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=78.6 pTM=0.738 ipTM=0.404 tol=0.712
2024-12-06 21:07:42,845 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=78.6 pTM=0.739 ipTM=0.388 tol=0.83
2024-12-06 21:07:54,127 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=78.6 pTM=0.739 ipTM=0.389 tol=1.38
2024-12-06 21:07:54,127 alphafold2_multimer_v3_model_5_seed_000 took 350.1s (30 recycles)
2024-12-06 21:07:54,481 reranking models by 'multimer' metric
2024-12-06 21:07:57,689 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 21:08:22,887 Relaxation took 28.4s
2024-12-06 21:08:22,887 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.6 pTM=0.739 ipTM=0.389
2024-12-06 21:09:18,608 Relaxation took 55.7s
2024-12-06 21:09:18,608 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.2 pTM=0.754 ipTM=0.321
2024-12-06 21:10:38,903 Relaxation took 80.3s
2024-12-06 21:10:38,903 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=77.9 pTM=0.742 ipTM=0.306
2024-12-06 21:11:17,344 Relaxation took 38.4s
2024-12-06 21:11:17,344 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.2 pTM=0.742 ipTM=0.272
2024-12-06 21:11:53,860 Relaxation took 36.5s
2024-12-06 21:11:53,861 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.7 pTM=0.73 ipTM=0.22
2024-12-06 21:11:55,227 Done