2024-12-06 21:12:12,866 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 21:12:13,226 Running on GPU
2024-12-06 21:12:17,187 Found 6 citations for tools or databases
2024-12-06 21:12:17,187 Query 1/1: KLHL23_OSBPL5 (length 1437)
2024-12-06 21:12:23,920 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:24,016 Error while fetching result from MSA server. Retrying... (1/5)
2024-12-06 21:12:24,016 Error: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
2024-12-06 21:12:35,130 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:41,234 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:47,333 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:53,429 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:53,699 Sleeping for 6s. Reason: PENDING
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2024-12-06 21:18:49,451 Sleeping for 10s. Reason: PENDING
2024-12-06 21:18:59,715 Sleeping for 8s. Reason: PENDING
2024-12-06 21:19:07,996 Sleeping for 6s. Reason: PENDING
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2024-12-06 21:20:47,317 Sleeping for 9s. Reason: PENDING
2024-12-06 21:20:56,593 Sleeping for 6s. Reason: RUNNING
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2024-12-06 21:24:13,945 Sleeping for 8s. Reason: PENDING
2024-12-06 21:24:22,207 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:24:31,506 Sleeping for 10s. Reason: RUNNING
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2024-12-06 21:26:01,393 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:26:07,649 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:26:15,913 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:26:21,171 Sleeping for 9s. Reason: RUNNING
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2024-12-06 21:26:35,696 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:26:51,921 Setting max_seq=508, max_extra_seq=2048
2024-12-06 21:31:30,658 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.9 pTM=0.46 ipTM=0.212
2024-12-06 21:32:26,925 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=68.9 pTM=0.47 ipTM=0.21 tol=20.6
2024-12-06 21:33:23,328 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.4 pTM=0.488 ipTM=0.248 tol=14.1
2024-12-06 21:34:19,829 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69 pTM=0.467 ipTM=0.203 tol=7.98
2024-12-06 21:35:16,472 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.1 pTM=0.464 ipTM=0.2 tol=5.64
2024-12-06 21:36:12,963 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.1 pTM=0.473 ipTM=0.228 tol=6.54
2024-12-06 21:37:09,573 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68.9 pTM=0.46 ipTM=0.2 tol=5.89
2024-12-06 21:38:06,229 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=69.2 pTM=0.461 ipTM=0.226 tol=4.81
2024-12-06 21:39:02,917 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=69.4 pTM=0.456 ipTM=0.214 tol=3.38
2024-12-06 21:39:59,626 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=69.4 pTM=0.458 ipTM=0.218 tol=3.11
2024-12-06 21:40:56,306 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=69.3 pTM=0.456 ipTM=0.197 tol=5.58
2024-12-06 21:41:53,027 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=69.3 pTM=0.454 ipTM=0.209 tol=3.16
2024-12-06 21:42:49,808 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=69.3 pTM=0.446 ipTM=0.204 tol=6.59
2024-12-06 21:43:46,534 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=69.7 pTM=0.455 ipTM=0.209 tol=5.55
2024-12-06 21:44:43,225 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=69.5 pTM=0.454 ipTM=0.205 tol=3.56
2024-12-06 21:45:39,938 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=69.3 pTM=0.454 ipTM=0.202 tol=2.66
2024-12-06 21:46:36,652 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=69.5 pTM=0.457 ipTM=0.208 tol=1.75
2024-12-06 21:47:33,379 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=69.4 pTM=0.444 ipTM=0.187 tol=3.53
2024-12-06 21:48:30,153 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=69.4 pTM=0.441 ipTM=0.182 tol=13.1
2024-12-06 21:49:26,728 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=69.1 pTM=0.454 ipTM=0.198 tol=10.8
2024-12-06 21:50:23,418 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=68.5 pTM=0.462 ipTM=0.214 tol=4.49
2024-12-06 21:51:19,992 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=66.9 pTM=0.462 ipTM=0.215 tol=16.2
2024-12-06 21:52:16,670 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=67.7 pTM=0.456 ipTM=0.199 tol=10.3
2024-12-06 21:53:13,243 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=68.6 pTM=0.459 ipTM=0.204 tol=5.77
2024-12-06 21:54:09,828 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=68.3 pTM=0.458 ipTM=0.205 tol=2.78
2024-12-06 21:55:06,390 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=68.6 pTM=0.46 ipTM=0.205 tol=2.29
2024-12-06 21:56:02,975 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=68.4 pTM=0.462 ipTM=0.211 tol=3.38
2024-12-06 21:56:59,593 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=68.6 pTM=0.462 ipTM=0.207 tol=5.06
2024-12-06 21:57:56,147 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=68.6 pTM=0.469 ipTM=0.223 tol=4.68
2024-12-06 21:58:52,729 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=68.9 pTM=0.472 ipTM=0.232 tol=3.39
2024-12-06 21:59:49,303 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=68.7 pTM=0.471 ipTM=0.23 tol=3.44
2024-12-06 21:59:49,304 alphafold2_multimer_v3_model_1_seed_000 took 1970.1s (30 recycles)
2024-12-06 22:00:47,414 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=67.3 pTM=0.534 ipTM=0.491
2024-12-06 22:01:44,181 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=68.9 pTM=0.488 ipTM=0.236 tol=14.6
2024-12-06 22:02:41,086 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=69.1 pTM=0.477 ipTM=0.22 tol=21.8
2024-12-06 22:03:37,899 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=70.1 pTM=0.471 ipTM=0.208 tol=11
2024-12-06 22:04:34,785 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=69.5 pTM=0.456 ipTM=0.194 tol=12.4
2024-12-06 22:05:31,758 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=69.9 pTM=0.442 ipTM=0.177 tol=15.9
2024-12-06 22:06:28,742 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=70 pTM=0.455 ipTM=0.253 tol=21.3
2024-12-06 22:07:25,576 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=70.2 pTM=0.46 ipTM=0.22 tol=7.66
2024-12-06 22:08:22,483 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=69.6 pTM=0.451 ipTM=0.19 tol=24.7
2024-12-06 22:09:19,277 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=70.4 pTM=0.462 ipTM=0.207 tol=10
2024-12-06 22:10:16,076 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=70.1 pTM=0.464 ipTM=0.212 tol=10.2
2024-12-06 22:11:12,861 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=69.9 pTM=0.461 ipTM=0.205 tol=11.8
2024-12-06 22:12:09,676 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=69.6 pTM=0.469 ipTM=0.207 tol=20.2
2024-12-06 22:13:06,433 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=70.6 pTM=0.47 ipTM=0.241 tol=12.3
2024-12-06 22:14:03,183 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=70.4 pTM=0.472 ipTM=0.224 tol=6.44
2024-12-06 22:14:59,964 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=70.2 pTM=0.466 ipTM=0.212 tol=3
2024-12-06 22:15:56,681 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=69.9 pTM=0.467 ipTM=0.211 tol=10.7
2024-12-06 22:16:53,364 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=69.8 pTM=0.467 ipTM=0.216 tol=7.43
2024-12-06 22:17:50,078 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=69.8 pTM=0.476 ipTM=0.223 tol=22.5
2024-12-06 22:18:46,801 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=70.4 pTM=0.47 ipTM=0.216 tol=11.8
2024-12-06 22:19:43,507 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=70.3 pTM=0.474 ipTM=0.217 tol=5.7
2024-12-06 22:20:40,191 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=70.4 pTM=0.478 ipTM=0.229 tol=3.86
2024-12-06 22:21:36,903 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=70.2 pTM=0.473 ipTM=0.223 tol=4.95
2024-12-06 22:22:33,657 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=70.3 pTM=0.47 ipTM=0.219 tol=4.43
2024-12-06 22:23:30,446 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=70.4 pTM=0.467 ipTM=0.211 tol=4.82
2024-12-06 22:24:27,165 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=70.4 pTM=0.473 ipTM=0.232 tol=2.13
2024-12-06 22:25:23,909 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=70.3 pTM=0.473 ipTM=0.225 tol=4.61
2024-12-06 22:26:20,723 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=70.2 pTM=0.471 ipTM=0.223 tol=5.91
2024-12-06 22:27:17,498 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=70.1 pTM=0.469 ipTM=0.215 tol=4.2
2024-12-06 22:28:14,243 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=69.9 pTM=0.479 ipTM=0.238 tol=13.7
2024-12-06 22:29:10,996 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=70.2 pTM=0.472 ipTM=0.224 tol=11
2024-12-06 22:29:10,998 alphafold2_multimer_v3_model_2_seed_000 took 1760.1s (30 recycles)
2024-12-06 22:30:09,265 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.4 pTM=0.528 ipTM=0.501
2024-12-06 22:31:05,994 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=68.2 pTM=0.473 ipTM=0.216 tol=16.7
2024-12-06 22:32:02,639 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=68.1 pTM=0.5 ipTM=0.284 tol=11.6
2024-12-06 22:32:59,377 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=68 pTM=0.472 ipTM=0.226 tol=6.34
2024-12-06 22:33:56,131 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68 pTM=0.475 ipTM=0.224 tol=4.56
2024-12-06 22:34:52,859 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.8 pTM=0.472 ipTM=0.225 tol=4.58
2024-12-06 22:35:49,696 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67.8 pTM=0.474 ipTM=0.224 tol=18.7
2024-12-06 22:36:46,500 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=67.9 pTM=0.476 ipTM=0.217 tol=5.59
2024-12-06 22:37:43,319 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.9 pTM=0.472 ipTM=0.207 tol=6.48
2024-12-06 22:38:40,071 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=68.3 pTM=0.47 ipTM=0.213 tol=7.43
2024-12-06 22:39:36,936 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=68.2 pTM=0.469 ipTM=0.201 tol=6.65
2024-12-06 22:40:33,727 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=68.1 pTM=0.466 ipTM=0.211 tol=7.89
2024-12-06 22:41:30,543 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.9 pTM=0.473 ipTM=0.22 tol=5.63
2024-12-06 22:42:27,367 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=68.1 pTM=0.468 ipTM=0.205 tol=3.51
2024-12-06 22:43:24,204 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=68.1 pTM=0.468 ipTM=0.212 tol=1.88
2024-12-06 22:44:21,128 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=67.9 pTM=0.459 ipTM=0.194 tol=3.29
2024-12-06 22:45:17,994 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=68.1 pTM=0.46 ipTM=0.197 tol=3.88
2024-12-06 22:46:14,887 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=68.2 pTM=0.448 ipTM=0.186 tol=5.1
2024-12-06 22:47:11,838 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=67.6 pTM=0.447 ipTM=0.193 tol=8.84
2024-12-06 22:48:08,666 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=67.2 pTM=0.455 ipTM=0.19 tol=27.8
2024-12-06 22:49:05,492 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=66.8 pTM=0.452 ipTM=0.183 tol=6.37
2024-12-06 22:50:02,408 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=67.1 pTM=0.451 ipTM=0.189 tol=28.2
2024-12-06 22:50:59,151 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=66.2 pTM=0.465 ipTM=0.212 tol=28
2024-12-06 22:51:55,898 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.6 pTM=0.459 ipTM=0.203 tol=10.8
2024-12-06 22:52:52,846 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=67.8 pTM=0.456 ipTM=0.207 tol=28.9
2024-12-06 22:53:49,660 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67 pTM=0.456 ipTM=0.188 tol=28.5
2024-12-06 22:54:46,362 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=66.4 pTM=0.465 ipTM=0.207 tol=8.84
2024-12-06 22:55:43,201 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=67.1 pTM=0.461 ipTM=0.185 tol=8.44
2024-12-06 22:56:39,984 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=67.3 pTM=0.451 ipTM=0.177 tol=6.19
2024-12-06 22:57:36,865 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=67.7 pTM=0.455 ipTM=0.211 tol=25.8
2024-12-06 22:58:33,743 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=67.7 pTM=0.449 ipTM=0.18 tol=18.8
2024-12-06 22:58:33,745 alphafold2_multimer_v3_model_3_seed_000 took 1761.2s (30 recycles)
2024-12-06 22:59:31,974 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=65.9 pTM=0.477 ipTM=0.23
2024-12-06 23:00:28,593 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66.2 pTM=0.5 ipTM=0.283 tol=11.8
2024-12-06 23:01:25,370 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=67.7 pTM=0.478 ipTM=0.242 tol=14.7
2024-12-06 23:02:22,168 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=68 pTM=0.473 ipTM=0.209 tol=13
2024-12-06 23:03:18,925 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=68.1 pTM=0.48 ipTM=0.234 tol=5.42
2024-12-06 23:04:15,728 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=67.8 pTM=0.478 ipTM=0.209 tol=3.53
2024-12-06 23:05:12,520 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=68 pTM=0.475 ipTM=0.213 tol=3.45
2024-12-06 23:06:09,328 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=67.9 pTM=0.469 ipTM=0.201 tol=5.06
2024-12-06 23:07:06,181 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=68.1 pTM=0.468 ipTM=0.206 tol=5.06
2024-12-06 23:08:03,123 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=67.6 pTM=0.467 ipTM=0.197 tol=2.99
2024-12-06 23:09:00,016 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=68.1 pTM=0.471 ipTM=0.209 tol=3.24
2024-12-06 23:09:56,975 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=67.8 pTM=0.463 ipTM=0.195 tol=2.95
2024-12-06 23:10:53,881 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=68 pTM=0.45 ipTM=0.182 tol=8.61
2024-12-06 23:11:50,713 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=66.6 pTM=0.468 ipTM=0.199 tol=23.3
2024-12-06 23:12:47,570 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=67.8 pTM=0.477 ipTM=0.202 tol=10.9
2024-12-06 23:13:44,437 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=67.9 pTM=0.477 ipTM=0.208 tol=10.2
2024-12-06 23:14:41,289 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=67.9 pTM=0.478 ipTM=0.214 tol=6.69
2024-12-06 23:15:38,141 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=68.1 pTM=0.482 ipTM=0.218 tol=3.36
2024-12-06 23:16:34,965 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=67.9 pTM=0.481 ipTM=0.22 tol=3.93
2024-12-06 23:17:31,772 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=68 pTM=0.483 ipTM=0.222 tol=3.27
2024-12-06 23:18:28,614 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=67.9 pTM=0.484 ipTM=0.227 tol=6.45
2024-12-06 23:19:25,438 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=67.9 pTM=0.482 ipTM=0.217 tol=5.73
2024-12-06 23:20:22,257 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=67.8 pTM=0.483 ipTM=0.224 tol=4.07
2024-12-06 23:21:19,083 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=67.8 pTM=0.485 ipTM=0.222 tol=10.1
2024-12-06 23:22:15,863 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=67.7 pTM=0.483 ipTM=0.225 tol=9.15
2024-12-06 23:23:12,690 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=68.1 pTM=0.48 ipTM=0.212 tol=8.64
2024-12-06 23:24:09,439 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=67.6 pTM=0.48 ipTM=0.216 tol=7.24
2024-12-06 23:25:06,162 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=67.8 pTM=0.481 ipTM=0.217 tol=4.19
2024-12-06 23:26:02,951 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=68 pTM=0.484 ipTM=0.23 tol=11.6
2024-12-06 23:26:59,739 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=67.5 pTM=0.485 ipTM=0.283 tol=8.01
2024-12-06 23:27:56,513 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=67.8 pTM=0.48 ipTM=0.215 tol=15.1
2024-12-06 23:27:56,514 alphafold2_multimer_v3_model_4_seed_000 took 1761.2s (30 recycles)
2024-12-06 23:28:54,701 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.6 pTM=0.515 ipTM=0.578
2024-12-06 23:29:51,365 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=68.1 pTM=0.481 ipTM=0.23 tol=11.5
2024-12-06 23:30:48,087 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68.4 pTM=0.464 ipTM=0.209 tol=11.2
2024-12-06 23:31:44,824 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=68.3 pTM=0.467 ipTM=0.245 tol=7.49
2024-12-06 23:32:41,564 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=69.1 pTM=0.485 ipTM=0.264 tol=11.1
2024-12-06 23:33:38,295 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=68.6 pTM=0.47 ipTM=0.256 tol=8.29
2024-12-06 23:34:35,109 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=68.7 pTM=0.465 ipTM=0.3 tol=11.1
2024-12-06 23:35:31,988 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=69.3 pTM=0.462 ipTM=0.205 tol=23.5
2024-12-06 23:36:28,781 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=69.6 pTM=0.476 ipTM=0.224 tol=14
2024-12-06 23:37:25,527 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=68.8 pTM=0.479 ipTM=0.231 tol=30
2024-12-06 23:38:22,257 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=69.2 pTM=0.501 ipTM=0.253 tol=9.24
2024-12-06 23:39:18,979 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=69 pTM=0.506 ipTM=0.265 tol=5.86
2024-12-06 23:40:15,718 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=69.1 pTM=0.493 ipTM=0.237 tol=4.21
2024-12-06 23:41:12,476 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=69.2 pTM=0.502 ipTM=0.259 tol=3.66
2024-12-06 23:42:09,246 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=69.4 pTM=0.498 ipTM=0.252 tol=5.08
2024-12-06 23:43:06,019 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=69.1 pTM=0.504 ipTM=0.257 tol=4.86
2024-12-06 23:44:02,744 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=69 pTM=0.494 ipTM=0.237 tol=2.56
2024-12-06 23:44:59,450 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=69.2 pTM=0.501 ipTM=0.247 tol=2.34
2024-12-06 23:45:56,171 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=69.1 pTM=0.496 ipTM=0.243 tol=1.8
2024-12-06 23:46:52,871 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=69.2 pTM=0.501 ipTM=0.253 tol=4.55
2024-12-06 23:47:49,594 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=69.1 pTM=0.495 ipTM=0.239 tol=2.38
2024-12-06 23:48:46,319 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=69 pTM=0.501 ipTM=0.245 tol=2.06
2024-12-06 23:49:43,044 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=69 pTM=0.499 ipTM=0.249 tol=1.92
2024-12-06 23:50:39,791 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=69.3 pTM=0.501 ipTM=0.256 tol=4.04
2024-12-06 23:51:36,534 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=69.1 pTM=0.497 ipTM=0.242 tol=3.29
2024-12-06 23:52:33,273 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=69 pTM=0.5 ipTM=0.244 tol=4.23
2024-12-06 23:53:30,006 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=69 pTM=0.497 ipTM=0.249 tol=3.17
2024-12-06 23:54:26,704 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=68.8 pTM=0.499 ipTM=0.244 tol=2.12
2024-12-06 23:55:23,416 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=69.1 pTM=0.496 ipTM=0.242 tol=2.08
2024-12-06 23:56:20,143 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=69.2 pTM=0.499 ipTM=0.248 tol=2.33
2024-12-06 23:57:16,866 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=69.1 pTM=0.499 ipTM=0.25 tol=4.66
2024-12-06 23:57:16,868 alphafold2_multimer_v3_model_5_seed_000 took 1758.8s (30 recycles)
2024-12-06 23:57:18,424 reranking models by 'multimer' metric
2024-12-06 23:57:22,612 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 00:02:15,227 Relaxation took 296.8s
2024-12-07 00:02:15,228 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=69.1 pTM=0.499 ipTM=0.25
2024-12-07 00:05:01,448 Relaxation took 166.2s
2024-12-07 00:05:01,448 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=68.7 pTM=0.471 ipTM=0.23
2024-12-07 00:07:54,291 Relaxation took 172.8s
2024-12-07 00:07:54,291 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=70.2 pTM=0.472 ipTM=0.224
2024-12-07 00:12:23,503 Relaxation took 269.2s
2024-12-07 00:12:23,503 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=67.8 pTM=0.48 ipTM=0.215
2024-12-07 00:16:10,818 Relaxation took 227.3s
2024-12-07 00:16:10,818 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=67.7 pTM=0.449 ipTM=0.18
2024-12-07 00:16:14,551 Done