2024-12-06 21:12:12,867 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 21:12:13,179 Running on GPU
2024-12-06 21:12:17,188 Found 6 citations for tools or databases
2024-12-06 21:12:17,188 Query 1/1: KLHL23_RGS3 (length 1756)
2024-12-06 21:12:23,911 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:24,016 Error while fetching result from MSA server. Retrying... (1/5)
2024-12-06 21:12:24,016 Error: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
2024-12-06 21:12:35,125 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:41,226 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:47,322 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:53,425 Timeout while submitting to MSA server. Retrying...
2024-12-06 21:12:53,698 Sleeping for 7s. Reason: PENDING
2024-12-06 21:13:00,986 Sleeping for 9s. Reason: PENDING
2024-12-06 21:13:10,291 Sleeping for 6s. Reason: PENDING
2024-12-06 21:13:16,552 Sleeping for 9s. Reason: PENDING
2024-12-06 21:13:25,813 Sleeping for 9s. Reason: PENDING
2024-12-06 21:13:35,077 Sleeping for 7s. Reason: PENDING
2024-12-06 21:13:42,333 Sleeping for 9s. Reason: PENDING
2024-12-06 21:13:51,597 Sleeping for 10s. Reason: PENDING
2024-12-06 21:14:01,862 Sleeping for 9s. Reason: PENDING
2024-12-06 21:14:11,127 Sleeping for 8s. Reason: PENDING
2024-12-06 21:14:19,396 Sleeping for 8s. Reason: PENDING
2024-12-06 21:14:27,665 Sleeping for 8s. Reason: PENDING
2024-12-06 21:14:35,923 Sleeping for 6s. Reason: PENDING
2024-12-06 21:14:42,179 Sleeping for 5s. Reason: PENDING
2024-12-06 21:14:47,448 Sleeping for 5s. Reason: PENDING
2024-12-06 21:14:52,716 Sleeping for 10s. Reason: PENDING
2024-12-06 21:15:02,989 Sleeping for 9s. Reason: PENDING
2024-12-06 21:15:12,264 Sleeping for 10s. Reason: PENDING
2024-12-06 21:15:22,526 Sleeping for 5s. Reason: PENDING
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2024-12-06 21:15:39,299 Sleeping for 5s. Reason: PENDING
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2024-12-06 21:15:50,820 Sleeping for 9s. Reason: PENDING
2024-12-06 21:16:00,075 Sleeping for 10s. Reason: PENDING
2024-12-06 21:16:10,336 Sleeping for 6s. Reason: PENDING
2024-12-06 21:16:16,608 Sleeping for 10s. Reason: PENDING
2024-12-06 21:16:26,891 Sleeping for 6s. Reason: PENDING
2024-12-06 21:16:33,152 Sleeping for 7s. Reason: PENDING
2024-12-06 21:16:40,423 Sleeping for 9s. Reason: PENDING
2024-12-06 21:16:49,695 Sleeping for 5s. Reason: PENDING
2024-12-06 21:16:54,959 Sleeping for 5s. Reason: PENDING
2024-12-06 21:17:00,228 Sleeping for 5s. Reason: PENDING
2024-12-06 21:17:05,482 Sleeping for 9s. Reason: PENDING
2024-12-06 21:17:14,744 Sleeping for 9s. Reason: PENDING
2024-12-06 21:17:24,013 Sleeping for 9s. Reason: PENDING
2024-12-06 21:17:33,276 Sleeping for 7s. Reason: PENDING
2024-12-06 21:17:40,533 Sleeping for 5s. Reason: PENDING
2024-12-06 21:17:45,790 Sleeping for 7s. Reason: PENDING
2024-12-06 21:17:53,050 Sleeping for 10s. Reason: PENDING
2024-12-06 21:18:03,308 Sleeping for 6s. Reason: PENDING
2024-12-06 21:18:09,572 Sleeping for 10s. Reason: PENDING
2024-12-06 21:18:19,842 Sleeping for 5s. Reason: PENDING
2024-12-06 21:18:25,105 Sleeping for 10s. Reason: PENDING
2024-12-06 21:18:35,519 Sleeping for 8s. Reason: PENDING
2024-12-06 21:18:43,782 Sleeping for 7s. Reason: PENDING
2024-12-06 21:18:51,044 Sleeping for 10s. Reason: PENDING
2024-12-06 21:19:01,315 Sleeping for 7s. Reason: PENDING
2024-12-06 21:19:08,584 Sleeping for 5s. Reason: PENDING
2024-12-06 21:19:13,853 Sleeping for 7s. Reason: PENDING
2024-12-06 21:19:21,118 Sleeping for 7s. Reason: PENDING
2024-12-06 21:19:28,372 Sleeping for 8s. Reason: PENDING
2024-12-06 21:19:36,634 Sleeping for 8s. Reason: PENDING
2024-12-06 21:19:44,894 Sleeping for 8s. Reason: PENDING
2024-12-06 21:19:53,154 Sleeping for 5s. Reason: PENDING
2024-12-06 21:19:58,415 Sleeping for 5s. Reason: PENDING
2024-12-06 21:20:03,689 Sleeping for 5s. Reason: PENDING
2024-12-06 21:20:08,952 Sleeping for 10s. Reason: PENDING
2024-12-06 21:20:19,228 Sleeping for 8s. Reason: PENDING
2024-12-06 21:20:27,495 Sleeping for 8s. Reason: PENDING
2024-12-06 21:20:35,756 Sleeping for 9s. Reason: PENDING
2024-12-06 21:20:45,017 Sleeping for 9s. Reason: PENDING
2024-12-06 21:20:54,279 Sleeping for 10s. Reason: PENDING
2024-12-06 21:21:04,554 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:21:13,818 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:21:23,090 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:21:32,348 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:21:37,605 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:21:42,866 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:21:49,132 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:21:59,393 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:22:05,660 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:22:15,924 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:22:24,189 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:22:31,599 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:22:36,859 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:22:43,124 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:22:53,390 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:22:59,653 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:23:05,921 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:23:12,182 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:23:19,449 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:23:25,708 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:23:33,967 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:23:41,229 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:23:48,493 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:23:54,752 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:24:01,011 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:24:07,270 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:24:14,531 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:24:21,795 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:24:32,059 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:24:41,326 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:24:46,587 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:24:52,842 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:25:01,105 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:25:11,360 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:25:21,629 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:25:26,892 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:25:37,151 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:25:45,558 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:25:52,811 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:26:05,175 Sleeping for 9s. Reason: PENDING
2024-12-06 21:26:14,440 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:26:22,701 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:26:28,955 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:26:34,209 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:26:39,467 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:26:46,729 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:26:52,998 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:27:00,260 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:27:07,520 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:27:14,791 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:27:24,062 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:27:30,320 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:27:38,578 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:27:43,841 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:27:53,105 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:28:02,364 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:28:09,626 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:28:14,882 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:28:20,135 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:28:30,399 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:28:40,664 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:28:48,927 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:28:58,199 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:29:03,459 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:29:11,721 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:29:16,973 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:29:22,229 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:29:29,489 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:29:34,745 Sleeping for 9s. Reason: RUNNING
2024-12-06 21:29:44,016 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:29:49,277 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:29:55,542 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:30:10,662 Setting max_seq=508, max_extra_seq=2048
2024-12-06 21:34:10,028 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=52.5 pTM=0.41 ipTM=0.233
2024-12-06 21:35:54,628 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=53.5 pTM=0.432 ipTM=0.271 tol=19
2024-12-06 21:37:39,233 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=54.4 pTM=0.441 ipTM=0.422 tol=17.8
2024-12-06 21:39:23,827 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=54.7 pTM=0.433 ipTM=0.29 tol=10.4
2024-12-06 21:41:08,430 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=54 pTM=0.427 ipTM=0.272 tol=11.4
2024-12-06 21:42:53,022 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=54.2 pTM=0.431 ipTM=0.288 tol=8.48
2024-12-06 21:44:37,607 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=53.6 pTM=0.432 ipTM=0.313 tol=8.12
2024-12-06 21:46:22,245 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=53.8 pTM=0.432 ipTM=0.311 tol=5.86
2024-12-06 21:48:06,839 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=53.3 pTM=0.431 ipTM=0.305 tol=8.27
2024-12-06 21:49:51,392 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=53.6 pTM=0.437 ipTM=0.312 tol=6.64
2024-12-06 21:51:35,946 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=53 pTM=0.435 ipTM=0.337 tol=9.52
2024-12-06 21:53:20,500 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=53.1 pTM=0.439 ipTM=0.38 tol=6.59
2024-12-06 21:55:05,080 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=53.2 pTM=0.438 ipTM=0.357 tol=6.59
2024-12-06 21:56:49,647 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=53.2 pTM=0.438 ipTM=0.318 tol=4.42
2024-12-06 21:58:34,253 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=53.7 pTM=0.44 ipTM=0.31 tol=7.12
2024-12-06 22:00:18,867 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=53.6 pTM=0.44 ipTM=0.3 tol=9.73
2024-12-06 22:02:03,445 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=53.7 pTM=0.441 ipTM=0.326 tol=5.28
2024-12-06 22:03:48,029 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=53.7 pTM=0.442 ipTM=0.318 tol=6.19
2024-12-06 22:05:32,576 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=53.5 pTM=0.435 ipTM=0.299 tol=8
2024-12-06 22:07:17,202 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=53.3 pTM=0.433 ipTM=0.306 tol=6.78
2024-12-06 22:09:01,832 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=53.4 pTM=0.437 ipTM=0.3 tol=6.12
2024-12-06 22:10:46,432 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=53.7 pTM=0.441 ipTM=0.315 tol=6.06
2024-12-06 22:12:31,090 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=53.8 pTM=0.439 ipTM=0.326 tol=4.27
2024-12-06 22:14:15,683 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=53.6 pTM=0.438 ipTM=0.312 tol=5.5
2024-12-06 22:16:00,276 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=53.5 pTM=0.436 ipTM=0.337 tol=3.83
2024-12-06 22:17:44,868 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=53.8 pTM=0.438 ipTM=0.313 tol=3.52
2024-12-06 22:19:29,496 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=53.6 pTM=0.434 ipTM=0.293 tol=3.48
2024-12-06 22:21:14,089 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=53.5 pTM=0.434 ipTM=0.293 tol=3.35
2024-12-06 22:22:58,628 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=53.3 pTM=0.434 ipTM=0.285 tol=2.27
2024-12-06 22:24:43,191 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=53.3 pTM=0.434 ipTM=0.3 tol=3.07
2024-12-06 22:26:27,754 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=53.6 pTM=0.435 ipTM=0.291 tol=3.92
2024-12-06 22:26:27,756 alphafold2_multimer_v3_model_1_seed_000 took 3372.0s (30 recycles)
2024-12-06 22:28:14,297 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=52.9 pTM=0.423 ipTM=0.272
2024-12-06 22:29:59,062 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=53.5 pTM=0.434 ipTM=0.361 tol=17.3
2024-12-06 22:31:43,813 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=55.1 pTM=0.439 ipTM=0.485 tol=11.3
2024-12-06 22:33:28,604 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=54.9 pTM=0.432 ipTM=0.291 tol=10.6
2024-12-06 22:35:13,386 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=54.8 pTM=0.433 ipTM=0.475 tol=6.65
2024-12-06 22:36:58,188 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55 pTM=0.435 ipTM=0.38 tol=7.42
2024-12-06 22:38:42,951 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=55 pTM=0.434 ipTM=0.369 tol=5.24
2024-12-06 22:40:27,713 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=55 pTM=0.434 ipTM=0.423 tol=6.38
2024-12-06 22:42:12,451 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=55.2 pTM=0.439 ipTM=0.598 tol=5.37
2024-12-06 22:43:57,181 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=55.2 pTM=0.442 ipTM=0.548 tol=7
2024-12-06 22:45:41,896 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=55.2 pTM=0.444 ipTM=0.6 tol=5.11
2024-12-06 22:47:26,653 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=55.1 pTM=0.446 ipTM=0.623 tol=4.86
2024-12-06 22:49:11,371 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=55.2 pTM=0.447 ipTM=0.56 tol=3.96
2024-12-06 22:50:56,131 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=55.1 pTM=0.447 ipTM=0.605 tol=4.56
2024-12-06 22:52:40,872 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=55 pTM=0.446 ipTM=0.537 tol=4.23
2024-12-06 22:54:25,580 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=54.9 pTM=0.447 ipTM=0.603 tol=5.47
2024-12-06 22:56:10,262 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=55.2 pTM=0.451 ipTM=0.6 tol=6.14
2024-12-06 22:57:54,993 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=55.2 pTM=0.449 ipTM=0.519 tol=5.2
2024-12-06 22:59:39,760 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=55.1 pTM=0.443 ipTM=0.562 tol=4.74
2024-12-06 23:01:24,513 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=55 pTM=0.444 ipTM=0.562 tol=3.87
2024-12-06 23:03:09,269 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=55.3 pTM=0.447 ipTM=0.59 tol=7.66
2024-12-06 23:04:53,997 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=55 pTM=0.446 ipTM=0.481 tol=8.08
2024-12-06 23:06:38,722 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=55.2 pTM=0.448 ipTM=0.624 tol=7.78
2024-12-06 23:08:23,454 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=55 pTM=0.447 ipTM=0.536 tol=8.51
2024-12-06 23:10:08,230 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=54.8 pTM=0.437 ipTM=0.364 tol=6.69
2024-12-06 23:11:52,978 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.1 pTM=0.449 ipTM=0.626 tol=7.02
2024-12-06 23:13:37,729 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=54.9 pTM=0.443 ipTM=0.521 tol=3.79
2024-12-06 23:15:22,461 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=54.8 pTM=0.443 ipTM=0.579 tol=4.37
2024-12-06 23:17:07,227 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=55.1 pTM=0.445 ipTM=0.43 tol=4.36
2024-12-06 23:18:51,945 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=55.2 pTM=0.446 ipTM=0.624 tol=4.62
2024-12-06 23:20:36,683 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=54.9 pTM=0.44 ipTM=0.5 tol=7.16
2024-12-06 23:20:36,685 alphafold2_multimer_v3_model_2_seed_000 took 3247.1s (30 recycles)
2024-12-06 23:22:23,765 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=53.5 pTM=0.418 ipTM=0.266
2024-12-06 23:24:08,896 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=56.1 pTM=0.475 ipTM=0.553 tol=25.6
2024-12-06 23:25:53,877 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=55.7 pTM=0.446 ipTM=0.469 tol=14.8
2024-12-06 23:27:38,853 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=55.6 pTM=0.44 ipTM=0.458 tol=6.89
2024-12-06 23:29:23,776 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=55.7 pTM=0.458 ipTM=0.508 tol=4.5
2024-12-06 23:31:08,710 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.5 pTM=0.447 ipTM=0.391 tol=4.43
2024-12-06 23:32:53,669 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.4 pTM=0.438 ipTM=0.373 tol=4.48
2024-12-06 23:34:38,662 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.3 pTM=0.441 ipTM=0.328 tol=5.2
2024-12-06 23:36:23,718 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=55.3 pTM=0.44 ipTM=0.425 tol=7.33
2024-12-06 23:38:08,772 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.2 pTM=0.437 ipTM=0.405 tol=7.09
2024-12-06 23:39:53,819 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=55.2 pTM=0.439 ipTM=0.437 tol=5.2
2024-12-06 23:41:38,855 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.3 pTM=0.441 ipTM=0.358 tol=5.48
2024-12-06 23:43:23,915 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=55.1 pTM=0.435 ipTM=0.371 tol=6.66
2024-12-06 23:45:08,997 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.2 pTM=0.438 ipTM=0.326 tol=4.81
2024-12-06 23:46:54,058 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.2 pTM=0.437 ipTM=0.312 tol=5.95
2024-12-06 23:48:39,072 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55.1 pTM=0.439 ipTM=0.33 tol=5.88
2024-12-06 23:50:24,135 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.1 pTM=0.433 ipTM=0.335 tol=6.06
2024-12-06 23:52:09,185 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.2 pTM=0.438 ipTM=0.324 tol=5.31
2024-12-06 23:53:54,244 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=54.9 pTM=0.433 ipTM=0.303 tol=5.84
2024-12-06 23:55:39,294 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.1 pTM=0.437 ipTM=0.317 tol=8.65
2024-12-06 23:57:24,347 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=55.1 pTM=0.438 ipTM=0.441 tol=6.47
2024-12-06 23:59:09,393 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=55.1 pTM=0.437 ipTM=0.375 tol=5.61
2024-12-07 00:00:54,367 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=54.9 pTM=0.432 ipTM=0.343 tol=5.31
2024-12-07 00:02:39,412 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55 pTM=0.438 ipTM=0.385 tol=5.3
2024-12-07 00:04:24,491 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=54.9 pTM=0.434 ipTM=0.389 tol=5.7
2024-12-07 00:06:09,564 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.1 pTM=0.438 ipTM=0.347 tol=6.45
2024-12-07 00:07:54,597 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.2 pTM=0.439 ipTM=0.436 tol=6.22
2024-12-07 00:09:39,690 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55.3 pTM=0.44 ipTM=0.341 tol=5.46
2024-12-07 00:11:24,797 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55 pTM=0.432 ipTM=0.302 tol=5.74
2024-12-07 00:13:09,897 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.2 pTM=0.442 ipTM=0.359 tol=6.55
2024-12-07 00:14:54,962 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.1 pTM=0.435 ipTM=0.352 tol=6.74
2024-12-07 00:14:54,964 alphafold2_multimer_v3_model_3_seed_000 took 3256.5s (30 recycles)
2024-12-07 00:16:42,033 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=51.2 pTM=0.396 ipTM=0.219
2024-12-07 00:18:27,158 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=54 pTM=0.445 ipTM=0.669 tol=23.6
2024-12-07 00:20:12,339 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=54.4 pTM=0.446 ipTM=0.539 tol=11.8
2024-12-07 00:21:57,523 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=53.7 pTM=0.44 ipTM=0.436 tol=11.6
2024-12-07 00:23:42,777 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=53.7 pTM=0.424 ipTM=0.261 tol=9.85
2024-12-07 00:25:27,924 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=52.7 pTM=0.423 ipTM=0.237 tol=14.7
2024-12-07 00:27:13,098 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=53.2 pTM=0.424 ipTM=0.23 tol=8.73
2024-12-07 00:28:58,244 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=52.9 pTM=0.423 ipTM=0.232 tol=10.8
2024-12-07 00:30:43,332 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=53.2 pTM=0.425 ipTM=0.232 tol=8.1
2024-12-07 00:32:28,419 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=53 pTM=0.422 ipTM=0.239 tol=7.98
2024-12-07 00:34:13,570 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=53.1 pTM=0.422 ipTM=0.239 tol=6.5
2024-12-07 00:35:58,651 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=52.9 pTM=0.424 ipTM=0.246 tol=8.69
2024-12-07 00:37:43,757 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=53.4 pTM=0.422 ipTM=0.241 tol=14.7
2024-12-07 00:39:28,814 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=52.9 pTM=0.423 ipTM=0.239 tol=13.8
2024-12-07 00:41:13,893 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=53.2 pTM=0.423 ipTM=0.234 tol=8.77
2024-12-07 00:42:58,904 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=53.1 pTM=0.423 ipTM=0.236 tol=6.62
2024-12-07 00:44:43,965 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=53.2 pTM=0.423 ipTM=0.234 tol=7.36
2024-12-07 00:46:28,951 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=53 pTM=0.423 ipTM=0.233 tol=10.3
2024-12-07 00:48:13,961 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=53.2 pTM=0.421 ipTM=0.232 tol=9.54
2024-12-07 00:49:58,949 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=53.2 pTM=0.422 ipTM=0.232 tol=6.21
2024-12-07 00:51:44,070 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=53.3 pTM=0.422 ipTM=0.231 tol=6.09
2024-12-07 00:53:29,061 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=53 pTM=0.423 ipTM=0.24 tol=6.44
2024-12-07 00:55:14,098 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=53.1 pTM=0.422 ipTM=0.234 tol=5.29
2024-12-07 00:56:59,096 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=53 pTM=0.423 ipTM=0.24 tol=6.26
2024-12-07 00:58:44,181 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=53.2 pTM=0.424 ipTM=0.235 tol=6.48
2024-12-07 01:00:29,199 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=53.1 pTM=0.423 ipTM=0.24 tol=7.68
2024-12-07 01:02:14,356 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=53.3 pTM=0.422 ipTM=0.232 tol=6.37
2024-12-07 01:03:59,412 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=53.2 pTM=0.422 ipTM=0.233 tol=9.96
2024-12-07 01:05:44,499 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=53.1 pTM=0.423 ipTM=0.235 tol=11.4
2024-12-07 01:07:29,509 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=53.1 pTM=0.421 ipTM=0.24 tol=7.83
2024-12-07 01:09:14,583 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=53.2 pTM=0.425 ipTM=0.258 tol=20.3
2024-12-07 01:09:14,585 alphafold2_multimer_v3_model_4_seed_000 took 3257.8s (30 recycles)
2024-12-07 01:11:01,554 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=52.1 pTM=0.418 ipTM=0.28
2024-12-07 01:12:46,613 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=53.8 pTM=0.438 ipTM=0.288 tol=20.8
2024-12-07 01:14:31,527 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=54.7 pTM=0.459 ipTM=0.571 tol=11.5
2024-12-07 01:16:16,448 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=54.4 pTM=0.451 ipTM=0.441 tol=6.98
2024-12-07 01:18:01,416 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=54.6 pTM=0.45 ipTM=0.387 tol=8.25
2024-12-07 01:19:46,415 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=54.7 pTM=0.451 ipTM=0.441 tol=8.62
2024-12-07 01:21:31,390 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=54.5 pTM=0.45 ipTM=0.416 tol=8.12
2024-12-07 01:23:16,393 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=54.7 pTM=0.452 ipTM=0.458 tol=10.6
2024-12-07 01:25:01,392 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=54.8 pTM=0.456 ipTM=0.479 tol=9.4
2024-12-07 01:26:46,324 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=55 pTM=0.457 ipTM=0.464 tol=10.6
2024-12-07 01:28:31,263 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=54.8 pTM=0.461 ipTM=0.527 tol=4.17
2024-12-07 01:30:16,232 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55 pTM=0.461 ipTM=0.516 tol=6.83
2024-12-07 01:32:01,215 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=54.9 pTM=0.468 ipTM=0.602 tol=9.25
2024-12-07 01:33:46,145 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=55.2 pTM=0.473 ipTM=0.629 tol=7.81
2024-12-07 01:35:31,101 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.3 pTM=0.479 ipTM=0.689 tol=4.92
2024-12-07 01:37:16,038 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.6 pTM=0.484 ipTM=0.71 tol=5.07
2024-12-07 01:39:00,988 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.4 pTM=0.484 ipTM=0.722 tol=8.82
2024-12-07 01:40:45,955 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.5 pTM=0.485 ipTM=0.729 tol=5.63
2024-12-07 01:42:30,926 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=55.4 pTM=0.484 ipTM=0.738 tol=4.42
2024-12-07 01:44:15,917 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=55.8 pTM=0.488 ipTM=0.753 tol=4.81
2024-12-07 01:46:00,888 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.6 pTM=0.489 ipTM=0.756 tol=6.84
2024-12-07 01:47:45,843 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55.7 pTM=0.488 ipTM=0.745 tol=6.7
2024-12-07 01:49:30,805 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.4 pTM=0.488 ipTM=0.749 tol=6.6
2024-12-07 01:51:15,744 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.6 pTM=0.489 ipTM=0.74 tol=6.44
2024-12-07 01:53:00,663 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.4 pTM=0.487 ipTM=0.743 tol=8.88
2024-12-07 01:54:45,604 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.8 pTM=0.492 ipTM=0.759 tol=5.04
2024-12-07 01:56:30,537 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.6 pTM=0.49 ipTM=0.759 tol=9.16
2024-12-07 01:58:15,474 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=55.8 pTM=0.492 ipTM=0.751 tol=7.56
2024-12-07 02:00:00,380 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.6 pTM=0.491 ipTM=0.767 tol=4.82
2024-12-07 02:01:45,309 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.9 pTM=0.493 ipTM=0.772 tol=4.82
2024-12-07 02:03:30,209 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.8 pTM=0.491 ipTM=0.77 tol=7.16
2024-12-07 02:03:30,211 alphafold2_multimer_v3_model_5_seed_000 took 3253.8s (30 recycles)
2024-12-07 02:03:32,034 reranking models by 'multimer' metric
2024-12-07 02:03:36,113 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 02:09:02,035 Relaxation took 330.0s
2024-12-07 02:09:02,035 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.8 pTM=0.491 ipTM=0.77
2024-12-07 02:13:17,927 Relaxation took 255.9s
2024-12-07 02:13:17,927 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=54.9 pTM=0.44 ipTM=0.5
2024-12-07 02:17:42,290 Relaxation took 264.4s
2024-12-07 02:17:42,290 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.1 pTM=0.435 ipTM=0.352
2024-12-07 02:21:47,450 Relaxation took 245.2s
2024-12-07 02:21:47,450 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=53.6 pTM=0.435 ipTM=0.291
2024-12-07 02:26:41,933 Relaxation took 294.5s
2024-12-07 02:26:41,934 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=53.2 pTM=0.425 ipTM=0.258
2024-12-07 02:26:45,870 Done