2024-12-06 21:56:11,887 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-06 21:56:13,384 Running on GPU
2024-12-06 21:56:17,553 Found 6 citations for tools or databases
2024-12-06 21:56:17,553 Query 1/1: KLHL2_NUDCD3 (length 954)
2024-12-06 21:56:17,915 Sleeping for 6s. Reason: PENDING
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2024-12-06 21:57:25,270 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:57:33,537 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:57:43,809 Sleeping for 8s. Reason: RUNNING
2024-12-06 21:57:52,075 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:57:59,337 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:58:06,602 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:58:16,863 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:58:27,121 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:58:33,381 Sleeping for 5s. Reason: RUNNING
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2024-12-06 21:58:53,157 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:59:03,420 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:59:08,677 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:59:13,939 Sleeping for 6s. Reason: RUNNING
2024-12-06 21:59:22,088 Sleeping for 9s. Reason: PENDING
2024-12-06 21:59:31,353 Sleeping for 7s. Reason: RUNNING
2024-12-06 21:59:38,610 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:59:43,865 Sleeping for 10s. Reason: RUNNING
2024-12-06 21:59:54,129 Sleeping for 5s. Reason: RUNNING
2024-12-06 21:59:59,389 Sleeping for 6s. Reason: RUNNING
2024-12-06 22:00:05,662 Sleeping for 9s. Reason: RUNNING
2024-12-06 22:00:14,925 Sleeping for 10s. Reason: RUNNING
2024-12-06 22:00:25,195 Sleeping for 5s. Reason: RUNNING
2024-12-06 22:00:30,450 Sleeping for 7s. Reason: RUNNING
2024-12-06 22:00:37,709 Sleeping for 7s. Reason: RUNNING
2024-12-06 22:00:44,971 Sleeping for 7s. Reason: RUNNING
2024-12-06 22:00:52,237 Sleeping for 8s. Reason: RUNNING
2024-12-06 22:01:00,498 Sleeping for 6s. Reason: RUNNING
2024-12-06 22:01:11,595 Setting max_seq=508, max_extra_seq=2048
2024-12-06 22:05:15,293 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.6 pTM=0.426 ipTM=0.213
2024-12-06 22:05:39,310 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.6 pTM=0.437 ipTM=0.267 tol=11.3
2024-12-06 22:06:03,368 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=74.8 pTM=0.434 ipTM=0.251 tol=7.63
2024-12-06 22:06:27,450 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.9 pTM=0.427 ipTM=0.24 tol=2.43
2024-12-06 22:06:51,558 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75 pTM=0.435 ipTM=0.257 tol=2.83
2024-12-06 22:07:15,689 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=74.2 pTM=0.432 ipTM=0.249 tol=3.61
2024-12-06 22:07:39,854 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=74.8 pTM=0.422 ipTM=0.218 tol=5.45
2024-12-06 22:08:04,021 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.3 pTM=0.433 ipTM=0.255 tol=2.25
2024-12-06 22:08:28,194 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=74.9 pTM=0.424 ipTM=0.231 tol=2.49
2024-12-06 22:08:52,378 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.2 pTM=0.424 ipTM=0.228 tol=3.35
2024-12-06 22:09:16,547 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=75.7 pTM=0.436 ipTM=0.26 tol=3.42
2024-12-06 22:09:40,709 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=75.6 pTM=0.438 ipTM=0.267 tol=2.22
2024-12-06 22:10:04,890 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=76.1 pTM=0.44 ipTM=0.266 tol=2.33
2024-12-06 22:10:29,039 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=75.3 pTM=0.427 ipTM=0.233 tol=1.79
2024-12-06 22:10:53,184 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=75.5 pTM=0.436 ipTM=0.263 tol=2.26
2024-12-06 22:11:17,311 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=75.8 pTM=0.44 ipTM=0.273 tol=2.58
2024-12-06 22:11:41,468 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=76 pTM=0.443 ipTM=0.276 tol=2.16
2024-12-06 22:12:05,631 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=75.4 pTM=0.429 ipTM=0.242 tol=1.57
2024-12-06 22:12:29,780 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=75.4 pTM=0.441 ipTM=0.276 tol=2.38
2024-12-06 22:12:53,920 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=75.7 pTM=0.445 ipTM=0.287 tol=1.27
2024-12-06 22:13:18,084 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=76.1 pTM=0.449 ipTM=0.292 tol=1.66
2024-12-06 22:13:42,238 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=76.1 pTM=0.447 ipTM=0.287 tol=1.3
2024-12-06 22:14:06,407 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=76 pTM=0.444 ipTM=0.277 tol=1.16
2024-12-06 22:14:30,580 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=75 pTM=0.449 ipTM=0.293 tol=3.75
2024-12-06 22:14:54,746 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=75.4 pTM=0.428 ipTM=0.238 tol=2.98
2024-12-06 22:15:18,907 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=75.6 pTM=0.435 ipTM=0.257 tol=2.12
2024-12-06 22:15:43,069 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=74.9 pTM=0.444 ipTM=0.285 tol=3.56
2024-12-06 22:16:07,230 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=75.2 pTM=0.424 ipTM=0.222 tol=3.16
2024-12-06 22:16:31,410 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=75.8 pTM=0.433 ipTM=0.255 tol=2.45
2024-12-06 22:16:55,598 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=75.1 pTM=0.423 ipTM=0.222 tol=1.55
2024-12-06 22:17:19,768 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=75.2 pTM=0.427 ipTM=0.236 tol=1.92
2024-12-06 22:17:19,770 alphafold2_multimer_v3_model_1_seed_000 took 947.1s (30 recycles)
2024-12-06 22:17:44,808 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=76.8 pTM=0.449 ipTM=0.254
2024-12-06 22:18:09,083 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.6 pTM=0.444 ipTM=0.253 tol=20.1
2024-12-06 22:18:33,324 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=76.4 pTM=0.441 ipTM=0.249 tol=5.44
2024-12-06 22:18:57,591 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.7 pTM=0.455 ipTM=0.36 tol=7.37
2024-12-06 22:19:21,843 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.1 pTM=0.456 ipTM=0.389 tol=3.11
2024-12-06 22:19:46,097 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78 pTM=0.454 ipTM=0.37 tol=2.08
2024-12-06 22:20:10,350 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78 pTM=0.451 ipTM=0.353 tol=2.12
2024-12-06 22:20:34,617 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=77.9 pTM=0.449 ipTM=0.365 tol=3.23
2024-12-06 22:20:58,878 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.1 pTM=0.452 ipTM=0.362 tol=1.46
2024-12-06 22:21:23,151 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.1 pTM=0.451 ipTM=0.365 tol=1.82
2024-12-06 22:21:47,405 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=78.3 pTM=0.451 ipTM=0.368 tol=1.28
2024-12-06 22:22:11,670 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=78.3 pTM=0.448 ipTM=0.36 tol=1.51
2024-12-06 22:22:35,942 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=78.1 pTM=0.459 ipTM=0.386 tol=1.61
2024-12-06 22:23:00,186 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=78.2 pTM=0.451 ipTM=0.374 tol=1.65
2024-12-06 22:23:24,438 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=78.1 pTM=0.448 ipTM=0.376 tol=1.85
2024-12-06 22:23:48,685 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=78.1 pTM=0.449 ipTM=0.366 tol=1.97
2024-12-06 22:24:12,947 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=78.1 pTM=0.452 ipTM=0.384 tol=1.13
2024-12-06 22:24:37,206 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=78.6 pTM=0.456 ipTM=0.387 tol=1.31
2024-12-06 22:25:01,457 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=78.4 pTM=0.452 ipTM=0.379 tol=1.34
2024-12-06 22:25:25,719 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=78 pTM=0.463 ipTM=0.396 tol=1.95
2024-12-06 22:25:49,993 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=78.6 pTM=0.454 ipTM=0.38 tol=2.36
2024-12-06 22:26:14,273 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=78.2 pTM=0.452 ipTM=0.386 tol=1.99
2024-12-06 22:26:38,539 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=78.4 pTM=0.456 ipTM=0.391 tol=2.3
2024-12-06 22:27:02,803 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=78.6 pTM=0.452 ipTM=0.387 tol=1.76
2024-12-06 22:27:27,044 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=78.1 pTM=0.462 ipTM=0.391 tol=1.76
2024-12-06 22:27:51,313 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=78.4 pTM=0.453 ipTM=0.382 tol=1.29
2024-12-06 22:28:15,574 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=78.4 pTM=0.448 ipTM=0.367 tol=1.95
2024-12-06 22:28:39,831 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=77.8 pTM=0.451 ipTM=0.368 tol=2.44
2024-12-06 22:29:04,101 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=78.3 pTM=0.45 ipTM=0.368 tol=3.14
2024-12-06 22:29:28,374 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=78.1 pTM=0.453 ipTM=0.376 tol=2.21
2024-12-06 22:29:52,637 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=78.2 pTM=0.45 ipTM=0.371 tol=2.94
2024-12-06 22:29:52,638 alphafold2_multimer_v3_model_2_seed_000 took 752.1s (30 recycles)
2024-12-06 22:30:17,732 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.4 pTM=0.465 ipTM=0.239
2024-12-06 22:30:41,980 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=77.7 pTM=0.456 ipTM=0.272 tol=4.29
2024-12-06 22:31:06,228 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.6 pTM=0.456 ipTM=0.247 tol=20.9
2024-12-06 22:31:30,475 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.3 pTM=0.444 ipTM=0.224 tol=4.28
2024-12-06 22:31:54,706 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76.2 pTM=0.436 ipTM=0.207 tol=3.32
2024-12-06 22:32:18,953 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=75.6 pTM=0.448 ipTM=0.243 tol=3.68
2024-12-06 22:32:43,203 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.1 pTM=0.435 ipTM=0.202 tol=3.03
2024-12-06 22:33:07,435 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=75.6 pTM=0.451 ipTM=0.253 tol=3.11
2024-12-06 22:33:31,660 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=75.9 pTM=0.433 ipTM=0.2 tol=2.81
2024-12-06 22:33:55,897 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=75.6 pTM=0.451 ipTM=0.255 tol=3.05
2024-12-06 22:34:20,133 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=76.2 pTM=0.434 ipTM=0.202 tol=3.79
2024-12-06 22:34:44,373 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=75.9 pTM=0.435 ipTM=0.216 tol=4.72
2024-12-06 22:35:08,612 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=76.2 pTM=0.425 ipTM=0.191 tol=3.56
2024-12-06 22:35:32,849 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=75.8 pTM=0.43 ipTM=0.205 tol=3.06
2024-12-06 22:35:57,068 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=75.8 pTM=0.426 ipTM=0.196 tol=2.82
2024-12-06 22:36:21,308 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=75.5 pTM=0.44 ipTM=0.238 tol=3.49
2024-12-06 22:36:45,559 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=75.8 pTM=0.429 ipTM=0.208 tol=3.4
2024-12-06 22:37:09,800 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=75.4 pTM=0.44 ipTM=0.242 tol=2.77
2024-12-06 22:37:34,036 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=75.8 pTM=0.427 ipTM=0.202 tol=2.81
2024-12-06 22:37:58,275 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=75.6 pTM=0.435 ipTM=0.229 tol=3.76
2024-12-06 22:38:22,511 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=75.8 pTM=0.43 ipTM=0.209 tol=3.14
2024-12-06 22:38:46,718 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=75.9 pTM=0.425 ipTM=0.198 tol=3.26
2024-12-06 22:39:10,947 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=75.8 pTM=0.428 ipTM=0.204 tol=1.58
2024-12-06 22:39:35,172 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=75.7 pTM=0.445 ipTM=0.253 tol=4.58
2024-12-06 22:39:59,408 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=75.9 pTM=0.43 ipTM=0.207 tol=4.14
2024-12-06 22:40:23,622 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=75.8 pTM=0.44 ipTM=0.238 tol=4.84
2024-12-06 22:40:47,820 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=75.7 pTM=0.425 ipTM=0.197 tol=3.47
2024-12-06 22:41:12,033 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=75.6 pTM=0.436 ipTM=0.228 tol=2.52
2024-12-06 22:41:36,272 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=76 pTM=0.428 ipTM=0.204 tol=4.02
2024-12-06 22:42:00,479 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=75.7 pTM=0.433 ipTM=0.227 tol=3.98
2024-12-06 22:42:24,686 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=75.9 pTM=0.43 ipTM=0.209 tol=4.67
2024-12-06 22:42:24,688 alphafold2_multimer_v3_model_3_seed_000 took 751.2s (30 recycles)
2024-12-06 22:42:49,747 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.8 pTM=0.481 ipTM=0.354
2024-12-06 22:43:14,014 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.8 pTM=0.438 ipTM=0.222 tol=12.2
2024-12-06 22:43:38,281 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=74.8 pTM=0.436 ipTM=0.216 tol=6.76
2024-12-06 22:44:02,554 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=74.6 pTM=0.435 ipTM=0.214 tol=2.9
2024-12-06 22:44:26,812 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=73.8 pTM=0.43 ipTM=0.202 tol=4.45
2024-12-06 22:44:51,070 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=73.8 pTM=0.43 ipTM=0.195 tol=3.04
2024-12-06 22:45:15,323 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73.6 pTM=0.43 ipTM=0.197 tol=2.95
2024-12-06 22:45:39,593 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=73.6 pTM=0.429 ipTM=0.195 tol=1.54
2024-12-06 22:46:03,840 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=73.8 pTM=0.434 ipTM=0.209 tol=2.53
2024-12-06 22:46:28,111 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.8 pTM=0.43 ipTM=0.197 tol=2.49
2024-12-06 22:46:52,381 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=73.8 pTM=0.431 ipTM=0.201 tol=2.73
2024-12-06 22:47:16,643 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=73.6 pTM=0.426 ipTM=0.194 tol=1.82
2024-12-06 22:47:40,898 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=73.8 pTM=0.432 ipTM=0.205 tol=3.12
2024-12-06 22:48:05,158 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=73.3 pTM=0.426 ipTM=0.193 tol=2.71
2024-12-06 22:48:29,429 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.5 pTM=0.43 ipTM=0.199 tol=4.59
2024-12-06 22:48:53,692 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73.4 pTM=0.427 ipTM=0.194 tol=2.53
2024-12-06 22:49:17,950 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=73.5 pTM=0.433 ipTM=0.204 tol=2.48
2024-12-06 22:49:42,214 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=73.5 pTM=0.426 ipTM=0.194 tol=2.95
2024-12-06 22:50:06,484 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=73.6 pTM=0.434 ipTM=0.207 tol=2.24
2024-12-06 22:50:30,756 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=73.3 pTM=0.425 ipTM=0.194 tol=1.93
2024-12-06 22:50:55,025 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=73.5 pTM=0.433 ipTM=0.208 tol=1.81
2024-12-06 22:51:19,293 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=73.8 pTM=0.428 ipTM=0.2 tol=1.95
2024-12-06 22:51:43,575 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=73.4 pTM=0.433 ipTM=0.205 tol=2
2024-12-06 22:52:07,846 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73.4 pTM=0.425 ipTM=0.191 tol=2.32
2024-12-06 22:52:32,136 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=73.8 pTM=0.434 ipTM=0.206 tol=4.72
2024-12-06 22:52:56,413 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=73.4 pTM=0.427 ipTM=0.194 tol=3.64
2024-12-06 22:53:20,679 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=73.5 pTM=0.429 ipTM=0.197 tol=2.04
2024-12-06 22:53:44,957 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=73.5 pTM=0.428 ipTM=0.192 tol=2.39
2024-12-06 22:54:09,228 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=73.5 pTM=0.431 ipTM=0.207 tol=3.82
2024-12-06 22:54:33,508 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=73.6 pTM=0.424 ipTM=0.189 tol=2.37
2024-12-06 22:54:57,784 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=73.8 pTM=0.431 ipTM=0.208 tol=1.96
2024-12-06 22:54:57,785 alphafold2_multimer_v3_model_4_seed_000 took 752.3s (30 recycles)
2024-12-06 22:55:22,881 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.3 pTM=0.445 ipTM=0.232
2024-12-06 22:55:47,219 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.4 pTM=0.438 ipTM=0.225 tol=14.4
2024-12-06 22:56:11,529 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75.7 pTM=0.435 ipTM=0.214 tol=14.3
2024-12-06 22:56:35,837 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76 pTM=0.433 ipTM=0.21 tol=7.96
2024-12-06 22:57:00,139 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.6 pTM=0.438 ipTM=0.228 tol=4.42
2024-12-06 22:57:24,424 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.6 pTM=0.433 ipTM=0.21 tol=3.45
2024-12-06 22:57:48,716 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.8 pTM=0.431 ipTM=0.208 tol=3.25
2024-12-06 22:58:13,011 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.6 pTM=0.431 ipTM=0.209 tol=1.81
2024-12-06 22:58:37,288 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=75.4 pTM=0.441 ipTM=0.235 tol=2.31
2024-12-06 22:59:01,582 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.1 pTM=0.439 ipTM=0.232 tol=4.43
2024-12-06 22:59:25,871 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=75.6 pTM=0.447 ipTM=0.25 tol=4.75
2024-12-06 22:59:50,151 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=75.9 pTM=0.433 ipTM=0.213 tol=3.96
2024-12-06 23:00:14,452 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76.1 pTM=0.435 ipTM=0.219 tol=2.8
2024-12-06 23:00:38,750 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=75.7 pTM=0.432 ipTM=0.211 tol=4.2
2024-12-06 23:01:03,055 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=75.8 pTM=0.429 ipTM=0.198 tol=2.53
2024-12-06 23:01:27,356 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=75.6 pTM=0.43 ipTM=0.201 tol=3.86
2024-12-06 23:01:51,665 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=75.4 pTM=0.437 ipTM=0.213 tol=5.9
2024-12-06 23:02:15,972 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=75.8 pTM=0.427 ipTM=0.188 tol=4.54
2024-12-06 23:02:40,303 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=75.2 pTM=0.447 ipTM=0.239 tol=4.2
2024-12-06 23:03:04,614 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=75.9 pTM=0.439 ipTM=0.218 tol=5.05
2024-12-06 23:03:28,915 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=75.8 pTM=0.439 ipTM=0.216 tol=4.23
2024-12-06 23:03:53,226 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=75.9 pTM=0.431 ipTM=0.198 tol=5
2024-12-06 23:04:17,541 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=75.1 pTM=0.432 ipTM=0.202 tol=7.03
2024-12-06 23:04:41,860 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=75.6 pTM=0.43 ipTM=0.193 tol=4.49
2024-12-06 23:05:06,186 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=75.6 pTM=0.43 ipTM=0.2 tol=3.29
2024-12-06 23:05:30,510 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=75.8 pTM=0.429 ipTM=0.193 tol=3.49
2024-12-06 23:05:54,825 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=75.5 pTM=0.432 ipTM=0.207 tol=5.84
2024-12-06 23:06:19,139 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=75.8 pTM=0.433 ipTM=0.205 tol=4.78
2024-12-06 23:06:43,450 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=76.1 pTM=0.433 ipTM=0.208 tol=2.82
2024-12-06 23:07:07,756 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=75.6 pTM=0.429 ipTM=0.198 tol=3.81
2024-12-06 23:07:32,067 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=75.2 pTM=0.446 ipTM=0.243 tol=6.14
2024-12-06 23:07:32,068 alphafold2_multimer_v3_model_5_seed_000 took 753.5s (30 recycles)
2024-12-06 23:07:32,881 reranking models by 'multimer' metric
2024-12-06 23:07:37,333 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-06 23:08:51,326 Relaxation took 78.4s
2024-12-06 23:08:51,326 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.2 pTM=0.45 ipTM=0.371
2024-12-06 23:11:05,584 Relaxation took 134.3s
2024-12-06 23:11:05,584 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=75.2 pTM=0.446 ipTM=0.243
2024-12-06 23:12:29,204 Relaxation took 83.6s
2024-12-06 23:12:29,205 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75.2 pTM=0.427 ipTM=0.236
2024-12-06 23:14:45,848 Relaxation took 136.6s
2024-12-06 23:14:45,848 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=73.8 pTM=0.431 ipTM=0.208
2024-12-06 23:16:10,894 Relaxation took 85.0s
2024-12-06 23:16:10,895 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=75.9 pTM=0.43 ipTM=0.209
2024-12-06 23:16:13,217 Done