2024-12-07 00:13:33,033 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-07 00:13:33,443 Running on GPU
2024-12-07 00:13:36,993 Found 6 citations for tools or databases
2024-12-07 00:13:36,994 Query 1/1: LITAF_PTPRD (length 2073)
2024-12-07 00:13:37,278 Sleeping for 10s. Reason: PENDING
2024-12-07 00:13:47,549 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:13:57,822 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:14:06,084 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:14:14,368 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:14:24,646 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:14:29,902 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:14:36,169 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:14:43,436 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:14:49,710 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:14:57,979 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:15:07,271 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:15:12,535 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:15:19,807 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:15:28,071 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:15:37,343 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:15:47,614 Sleeping for 10s. Reason: RUNNING
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2024-12-07 00:16:24,978 Sleeping for 7s. Reason: RUNNING
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2024-12-07 00:16:37,511 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:16:47,790 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:16:57,074 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:17:04,344 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:17:11,611 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:17:16,870 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:17:24,136 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:17:32,418 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:17:38,683 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:17:45,951 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:17:54,223 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:18:02,489 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:18:07,751 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:18:17,009 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:18:22,280 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:18:27,541 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:18:36,807 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:18:43,080 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:18:49,335 Sleeping for 6s. Reason: RUNNING
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2024-12-07 00:19:02,870 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:19:13,136 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:19:21,409 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:19:27,701 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:19:36,978 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:19:45,236 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:19:50,500 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:19:56,766 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:20:05,029 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:20:11,298 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:20:17,567 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:20:27,844 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:20:38,123 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:20:47,391 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:20:54,672 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:21:00,940 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:21:08,198 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:21:13,458 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:21:20,716 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:21:28,976 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:21:37,234 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:21:45,494 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:21:51,764 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:22:00,025 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:22:06,284 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:22:15,544 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:22:24,823 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:22:30,096 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:22:38,377 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:22:45,640 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:22:52,921 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:23:00,188 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:23:10,462 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:23:16,724 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:23:26,991 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:23:37,257 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:23:45,553 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:23:54,827 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:24:03,999 Sleeping for 7s. Reason: PENDING
2024-12-07 00:24:11,278 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:24:16,548 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:24:24,814 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:24:31,086 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:24:39,362 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:24:45,627 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:24:52,892 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:24:58,158 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:25:06,429 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:25:15,686 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:25:23,942 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:25:32,210 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:25:40,484 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:25:45,746 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:25:52,022 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:26:01,301 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:26:08,563 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:26:16,837 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:26:27,108 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:26:32,377 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:26:39,639 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:26:49,907 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:27:00,199 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:27:06,479 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:27:13,743 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:27:20,994 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:27:31,264 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:27:40,524 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:27:48,793 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:27:57,063 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:28:03,341 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:28:12,613 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:28:20,874 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:28:29,154 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:28:35,417 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:28:40,687 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:28:48,955 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:28:57,212 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:29:03,481 Sleeping for 7s. Reason: RUNNING
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2024-12-07 00:29:15,999 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:29:26,269 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:29:33,539 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:29:42,816 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:29:49,094 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:29:55,357 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:30:04,635 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:30:12,905 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:30:22,178 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:30:30,484 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:30:37,750 Sleeping for 8s. Reason: RUNNING
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2024-12-07 00:30:54,286 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:31:02,554 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:31:11,972 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:31:22,236 Sleeping for 7s. Reason: RUNNING
2024-12-07 00:31:29,501 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:31:38,767 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:31:45,023 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:31:50,289 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:32:00,745 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:32:09,011 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:32:19,284 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:32:27,543 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:32:36,810 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:32:45,078 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:32:53,344 Sleeping for 8s. Reason: RUNNING
2024-12-07 00:33:01,632 Sleeping for 9s. Reason: RUNNING
2024-12-07 00:33:10,906 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:33:16,178 Sleeping for 5s. Reason: RUNNING
2024-12-07 00:33:21,448 Sleeping for 10s. Reason: RUNNING
2024-12-07 00:33:31,707 Sleeping for 6s. Reason: RUNNING
2024-12-07 00:33:49,028 Setting max_seq=508, max_extra_seq=2048
2024-12-07 00:40:02,847 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=76.9 pTM=0.402 ipTM=0.216
2024-12-07 00:42:19,032 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.6 pTM=0.407 ipTM=0.223 tol=12.3
2024-12-07 00:44:35,046 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=76.8 pTM=0.406 ipTM=0.225 tol=5.39
2024-12-07 00:46:50,877 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=76.4 pTM=0.408 ipTM=0.225 tol=3.02
2024-12-07 00:49:06,640 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=76.3 pTM=0.409 ipTM=0.223 tol=2.31
2024-12-07 00:51:22,331 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=76.2 pTM=0.41 ipTM=0.226 tol=2.38
2024-12-07 00:53:37,961 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=76.2 pTM=0.409 ipTM=0.229 tol=1.81
2024-12-07 00:55:53,517 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=76.2 pTM=0.408 ipTM=0.228 tol=1.46
2024-12-07 00:58:08,999 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=76.2 pTM=0.406 ipTM=0.228 tol=1.72
2024-12-07 01:00:24,442 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=76.1 pTM=0.406 ipTM=0.225 tol=2
2024-12-07 01:02:39,898 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=76.1 pTM=0.406 ipTM=0.222 tol=2.85
2024-12-07 01:04:55,404 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=76.4 pTM=0.404 ipTM=0.218 tol=3.06
2024-12-07 01:07:10,940 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=76.4 pTM=0.403 ipTM=0.222 tol=4.39
2024-12-07 01:09:26,454 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=76.6 pTM=0.403 ipTM=0.217 tol=4.82
2024-12-07 01:11:41,950 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=76.5 pTM=0.402 ipTM=0.215 tol=4.28
2024-12-07 01:13:57,477 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=76.5 pTM=0.405 ipTM=0.217 tol=6.95
2024-12-07 01:16:12,958 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=76.5 pTM=0.406 ipTM=0.223 tol=4.93
2024-12-07 01:18:28,411 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=76.6 pTM=0.405 ipTM=0.218 tol=3.45
2024-12-07 01:20:43,849 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=76.5 pTM=0.406 ipTM=0.219 tol=2.16
2024-12-07 01:22:59,317 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=76.8 pTM=0.407 ipTM=0.219 tol=1.54
2024-12-07 01:25:14,728 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=76.6 pTM=0.406 ipTM=0.221 tol=0.852
2024-12-07 01:27:30,042 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=76.9 pTM=0.406 ipTM=0.219 tol=1.19
2024-12-07 01:29:45,385 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=76.9 pTM=0.405 ipTM=0.22 tol=1.16
2024-12-07 01:32:00,934 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=76.8 pTM=0.405 ipTM=0.221 tol=0.982
2024-12-07 01:34:16,771 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=76.8 pTM=0.405 ipTM=0.221 tol=1.09
2024-12-07 01:36:32,366 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=76.9 pTM=0.406 ipTM=0.221 tol=0.796
2024-12-07 01:38:47,832 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=76.8 pTM=0.406 ipTM=0.222 tol=0.595
2024-12-07 01:41:03,279 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=76.7 pTM=0.406 ipTM=0.222 tol=1.2
2024-12-07 01:43:18,598 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=76.8 pTM=0.405 ipTM=0.221 tol=0.985
2024-12-07 01:45:33,871 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=76 pTM=0.405 ipTM=0.222 tol=7.76
2024-12-07 01:47:49,184 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=76.6 pTM=0.405 ipTM=0.22 tol=7.47
2024-12-07 01:47:49,186 alphafold2_multimer_v3_model_1_seed_000 took 4434.9s (30 recycles)
2024-12-07 01:50:08,174 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.9 pTM=0.402 ipTM=0.227
2024-12-07 01:52:23,950 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.6 pTM=0.407 ipTM=0.237 tol=17.9
2024-12-07 01:54:39,579 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=77.5 pTM=0.411 ipTM=0.254 tol=8.05
2024-12-07 01:56:55,191 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.6 pTM=0.412 ipTM=0.269 tol=6.98
2024-12-07 01:59:10,807 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=77.6 pTM=0.411 ipTM=0.26 tol=3.66
2024-12-07 02:01:26,526 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77.4 pTM=0.412 ipTM=0.258 tol=2.63
2024-12-07 02:03:42,203 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=77.4 pTM=0.411 ipTM=0.252 tol=1.94
2024-12-07 02:05:57,811 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=77.4 pTM=0.41 ipTM=0.25 tol=1.49
2024-12-07 02:08:13,427 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=77.4 pTM=0.411 ipTM=0.25 tol=1.3
2024-12-07 02:10:29,241 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=77.4 pTM=0.41 ipTM=0.249 tol=0.98
2024-12-07 02:12:45,178 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=77.4 pTM=0.411 ipTM=0.252 tol=0.866
2024-12-07 02:15:01,069 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=77.4 pTM=0.411 ipTM=0.249 tol=0.828
2024-12-07 02:17:16,942 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=77.3 pTM=0.41 ipTM=0.248 tol=0.948
2024-12-07 02:19:32,766 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=77.4 pTM=0.411 ipTM=0.251 tol=0.9
2024-12-07 02:21:48,873 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=77.4 pTM=0.411 ipTM=0.25 tol=0.804
2024-12-07 02:24:04,821 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=77.4 pTM=0.41 ipTM=0.25 tol=1.02
2024-12-07 02:26:20,669 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=77.4 pTM=0.41 ipTM=0.251 tol=1.01
2024-12-07 02:28:36,516 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=77.4 pTM=0.411 ipTM=0.25 tol=1.07
2024-12-07 02:30:52,131 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=77.6 pTM=0.411 ipTM=0.251 tol=1.04
2024-12-07 02:33:07,688 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=77.7 pTM=0.412 ipTM=0.255 tol=0.649
2024-12-07 02:35:23,239 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=77.4 pTM=0.411 ipTM=0.252 tol=0.769
2024-12-07 02:37:38,818 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=77.3 pTM=0.411 ipTM=0.25 tol=0.968
2024-12-07 02:39:54,461 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=77.4 pTM=0.41 ipTM=0.249 tol=0.911
2024-12-07 02:42:10,084 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=77.4 pTM=0.411 ipTM=0.25 tol=0.906
2024-12-07 02:44:25,684 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=77.4 pTM=0.411 ipTM=0.25 tol=1.05
2024-12-07 02:46:41,274 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=77.4 pTM=0.411 ipTM=0.247 tol=1.15
2024-12-07 02:48:56,883 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=77.4 pTM=0.411 ipTM=0.247 tol=0.837
2024-12-07 02:51:12,499 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=77.3 pTM=0.41 ipTM=0.25 tol=1.08
2024-12-07 02:53:28,132 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=77.3 pTM=0.41 ipTM=0.25 tol=0.755
2024-12-07 02:55:43,764 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=77.3 pTM=0.411 ipTM=0.248 tol=0.915
2024-12-07 02:57:59,303 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=77.3 pTM=0.411 ipTM=0.249 tol=1.42
2024-12-07 02:57:59,305 alphafold2_multimer_v3_model_2_seed_000 took 4207.0s (30 recycles)
2024-12-07 03:00:18,346 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.8 pTM=0.401 ipTM=0.203
2024-12-07 03:02:34,275 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.4 pTM=0.404 ipTM=0.205 tol=12.9
2024-12-07 03:04:50,155 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.2 pTM=0.404 ipTM=0.207 tol=8.16
2024-12-07 03:07:05,953 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.5 pTM=0.407 ipTM=0.213 tol=5.59
2024-12-07 03:09:21,787 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.4 pTM=0.407 ipTM=0.215 tol=3.33
2024-12-07 03:11:37,502 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=78.5 pTM=0.409 ipTM=0.218 tol=2.28
2024-12-07 03:13:53,083 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=78.4 pTM=0.408 ipTM=0.215 tol=1.31
2024-12-07 03:16:08,752 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=78.2 pTM=0.409 ipTM=0.216 tol=6.2
2024-12-07 03:18:24,361 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.5 pTM=0.412 ipTM=0.267 tol=4.49
2024-12-07 03:20:39,943 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=78.6 pTM=0.412 ipTM=0.264 tol=1.95
2024-12-07 03:22:55,714 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=78.6 pTM=0.412 ipTM=0.269 tol=1.27
2024-12-07 03:25:11,536 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=78.7 pTM=0.412 ipTM=0.271 tol=1.05
2024-12-07 03:27:27,381 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=78.6 pTM=0.412 ipTM=0.263 tol=1.29
2024-12-07 03:29:43,230 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.7 pTM=0.411 ipTM=0.258 tol=1.25
2024-12-07 03:31:58,899 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=78.6 pTM=0.41 ipTM=0.253 tol=0.924
2024-12-07 03:34:14,535 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78.7 pTM=0.411 ipTM=0.262 tol=0.734
2024-12-07 03:36:30,410 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.6 pTM=0.411 ipTM=0.263 tol=1.05
2024-12-07 03:38:46,297 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78.6 pTM=0.411 ipTM=0.267 tol=0.88
2024-12-07 03:41:02,143 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=78.6 pTM=0.412 ipTM=0.262 tol=0.794
2024-12-07 03:43:17,876 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=78.6 pTM=0.411 ipTM=0.26 tol=0.509
2024-12-07 03:45:33,525 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=78.4 pTM=0.411 ipTM=0.258 tol=0.997
2024-12-07 03:47:49,078 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=78.6 pTM=0.411 ipTM=0.255 tol=0.748
2024-12-07 03:50:04,802 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=78.7 pTM=0.411 ipTM=0.257 tol=0.749
2024-12-07 03:52:20,470 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=78.6 pTM=0.411 ipTM=0.261 tol=1.23
2024-12-07 03:54:36,128 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=78.8 pTM=0.412 ipTM=0.255 tol=0.921
2024-12-07 03:56:51,685 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=78.6 pTM=0.411 ipTM=0.254 tol=1.57
2024-12-07 03:59:07,281 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=78.4 pTM=0.411 ipTM=0.259 tol=2.16
2024-12-07 04:01:22,805 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=78.6 pTM=0.411 ipTM=0.254 tol=0.856
2024-12-07 04:03:38,509 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=78.6 pTM=0.412 ipTM=0.264 tol=1.08
2024-12-07 04:05:54,213 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=78.4 pTM=0.411 ipTM=0.258 tol=0.7
2024-12-07 04:08:09,872 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=78.5 pTM=0.412 ipTM=0.262 tol=1.64
2024-12-07 04:08:09,874 alphafold2_multimer_v3_model_3_seed_000 took 4207.4s (30 recycles)
2024-12-07 04:10:28,999 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.4 pTM=0.394 ipTM=0.211
2024-12-07 04:12:44,863 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.9 pTM=0.41 ipTM=0.246 tol=15.5
2024-12-07 04:15:00,566 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=76.1 pTM=0.411 ipTM=0.248 tol=6.72
2024-12-07 04:17:16,253 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76.6 pTM=0.411 ipTM=0.247 tol=5.36
2024-12-07 04:19:31,927 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=76.5 pTM=0.409 ipTM=0.242 tol=2.66
2024-12-07 04:21:47,531 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=76.4 pTM=0.41 ipTM=0.247 tol=2.09
2024-12-07 04:24:03,122 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76.5 pTM=0.409 ipTM=0.246 tol=2.33
2024-12-07 04:26:18,666 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=76.4 pTM=0.408 ipTM=0.241 tol=1.89
2024-12-07 04:28:34,150 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=76.4 pTM=0.408 ipTM=0.239 tol=1.3
2024-12-07 04:30:49,630 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=76.4 pTM=0.407 ipTM=0.24 tol=1.29
2024-12-07 04:33:05,133 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=76.4 pTM=0.408 ipTM=0.233 tol=2.02
2024-12-07 04:35:20,708 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=76.4 pTM=0.407 ipTM=0.235 tol=2.03
2024-12-07 04:37:36,286 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=76.4 pTM=0.407 ipTM=0.236 tol=2.46
2024-12-07 04:39:51,901 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=76.5 pTM=0.409 ipTM=0.243 tol=2.74
2024-12-07 04:42:07,523 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=76.4 pTM=0.407 ipTM=0.244 tol=1.51
2024-12-07 04:44:23,355 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=76.3 pTM=0.407 ipTM=0.239 tol=1.61
2024-12-07 04:46:39,094 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=76.6 pTM=0.408 ipTM=0.245 tol=1.52
2024-12-07 04:48:54,803 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=76.5 pTM=0.407 ipTM=0.241 tol=1.63
2024-12-07 04:51:10,416 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=76.4 pTM=0.408 ipTM=0.247 tol=1.34
2024-12-07 04:53:26,110 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=76.6 pTM=0.408 ipTM=0.245 tol=0.946
2024-12-07 04:55:41,853 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=76.2 pTM=0.407 ipTM=0.25 tol=1.36
2024-12-07 04:57:57,582 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=76.4 pTM=0.407 ipTM=0.243 tol=1.13
2024-12-07 05:00:13,401 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=76.6 pTM=0.407 ipTM=0.25 tol=1.59
2024-12-07 05:02:29,008 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=76.4 pTM=0.407 ipTM=0.25 tol=2.98
2024-12-07 05:04:44,522 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=76.4 pTM=0.408 ipTM=0.25 tol=3.38
2024-12-07 05:07:00,048 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=76.2 pTM=0.408 ipTM=0.248 tol=3.74
2024-12-07 05:09:15,542 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=76.2 pTM=0.407 ipTM=0.245 tol=2.69
2024-12-07 05:11:31,182 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=76.2 pTM=0.406 ipTM=0.249 tol=1.8
2024-12-07 05:13:46,744 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=76.1 pTM=0.406 ipTM=0.252 tol=4.12
2024-12-07 05:16:02,355 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=76.4 pTM=0.41 ipTM=0.255 tol=2.85
2024-12-07 05:18:18,038 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=76.3 pTM=0.412 ipTM=0.259 tol=1.96
2024-12-07 05:18:18,040 alphafold2_multimer_v3_model_4_seed_000 took 4205.0s (30 recycles)
2024-12-07 05:20:37,142 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.3 pTM=0.397 ipTM=0.198
2024-12-07 05:22:52,886 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.6 pTM=0.409 ipTM=0.218 tol=15.3
2024-12-07 05:25:08,642 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.9 pTM=0.409 ipTM=0.222 tol=5.18
2024-12-07 05:27:24,263 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.1 pTM=0.412 ipTM=0.247 tol=3.83
2024-12-07 05:29:39,828 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.1 pTM=0.411 ipTM=0.235 tol=2.53
2024-12-07 05:31:55,297 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.1 pTM=0.413 ipTM=0.243 tol=2.87
2024-12-07 05:34:10,827 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.2 pTM=0.414 ipTM=0.26 tol=1.57
2024-12-07 05:36:26,431 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.1 pTM=0.417 ipTM=0.227 tol=1.77
2024-12-07 05:38:41,834 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.2 pTM=0.448 ipTM=0.232 tol=3.38
2024-12-07 05:40:57,226 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.1 pTM=0.427 ipTM=0.247 tol=2.68
2024-12-07 05:43:12,596 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.2 pTM=0.415 ipTM=0.238 tol=2
2024-12-07 05:45:27,913 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.1 pTM=0.412 ipTM=0.248 tol=1.34
2024-12-07 05:47:43,199 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.1 pTM=0.412 ipTM=0.239 tol=1.35
2024-12-07 05:49:58,650 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.1 pTM=0.413 ipTM=0.231 tol=1.29
2024-12-07 05:52:14,001 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=78.2 pTM=0.415 ipTM=0.239 tol=1.28
2024-12-07 05:54:29,317 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.2 pTM=0.42 ipTM=0.222 tol=1.37
2024-12-07 05:56:44,492 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=78.3 pTM=0.447 ipTM=0.226 tol=2.46
2024-12-07 05:58:59,712 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78.1 pTM=0.425 ipTM=0.231 tol=1.94
2024-12-07 06:01:15,069 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=78.2 pTM=0.416 ipTM=0.235 tol=1.81
2024-12-07 06:03:30,428 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=78.3 pTM=0.417 ipTM=0.223 tol=1.67
2024-12-07 06:05:45,719 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78.1 pTM=0.426 ipTM=0.235 tol=1.83
2024-12-07 06:08:00,986 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=78.2 pTM=0.429 ipTM=0.242 tol=1.98
2024-12-07 06:10:16,198 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=78.4 pTM=0.427 ipTM=0.227 tol=1.49
2024-12-07 06:12:31,465 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=78.3 pTM=0.423 ipTM=0.264 tol=1.06
2024-12-07 06:14:46,781 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=78.4 pTM=0.432 ipTM=0.234 tol=1.48
2024-12-07 06:17:02,097 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=78.2 pTM=0.427 ipTM=0.238 tol=1.31
2024-12-07 06:19:17,503 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=78.2 pTM=0.419 ipTM=0.252 tol=1.33
2024-12-07 06:21:32,808 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=78.2 pTM=0.419 ipTM=0.236 tol=1.76
2024-12-07 06:23:48,073 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=78.2 pTM=0.418 ipTM=0.251 tol=1.67
2024-12-07 06:26:03,346 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=78.2 pTM=0.423 ipTM=0.25 tol=0.855
2024-12-07 06:28:18,610 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=78.2 pTM=0.431 ipTM=0.235 tol=1.43
2024-12-07 06:28:18,613 alphafold2_multimer_v3_model_5_seed_000 took 4197.4s (30 recycles)
2024-12-07 06:28:21,759 reranking models by 'multimer' metric
2024-12-07 06:28:26,626 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-07 06:34:52,781 Relaxation took 391.0s
2024-12-07 06:34:52,781 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.5 pTM=0.412 ipTM=0.262
2024-12-07 06:42:43,333 Relaxation took 470.5s
2024-12-07 06:42:43,333 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76.3 pTM=0.412 ipTM=0.259
2024-12-07 06:46:00,873 Relaxation took 197.5s
2024-12-07 06:46:00,874 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=77.3 pTM=0.411 ipTM=0.249
2024-12-07 06:49:47,279 Relaxation took 226.4s
2024-12-07 06:49:47,279 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.2 pTM=0.431 ipTM=0.235
2024-12-07 06:56:12,964 Relaxation took 385.7s
2024-12-07 06:56:12,964 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.6 pTM=0.405 ipTM=0.22
2024-12-07 06:56:19,397 Done